Gene

KWMTBOMO01446

Pre Gene Modal

BGIBMGA008929

Annotation

DNA-directed_RNA_polymerase?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr3(+):10863120-10884303      View in EpiBrowser

Full name

DNA-directed RNA polymerase      

Location in the cell

Nuclear   Reliability : 2.961

CDS

ATGCATAGACTTATAAGTGCTAGAAGCTTATATCAGAGTTCTCTACATGGCACTTCCGTTTTACCACCAAATAATTCTACGACTACAATCACAACATCGAATATCACATGTTCCTTTTGTCGGAAAATATTATTAGGCCGAAACTATGCAGAAAACATTTTTTCTGTACGACATCAATCTACAAAAACTGCAAGCATATTGAGGTCACAGAAAAAAAAGGCGAAACACAAAGGCTATAAAAAATATGGCGAAGTTCTTGAAGTTGGTGACAAAGCGATGACAGAAATGCAAGTATCTATAAGTAAATTACATGCAGCTCACTTGTCTAAACTGGCTGCCAGTCCAGTATCTCTAGGACAGCTCCACCAACTAACAACAAAACCTAAGAAACCAGTGAATGTACAACTAGACACCGAATTACTACAAAGAGTACGTGAAAAAATCTTGAACAACTCTTCCGACAATATTAAATTGGTTTCACTGGAAGATGATAAATGCGCTTTGATATATACCCATCATAAAATCACTAATTTAGAAGAGAAATTCAAAAAGAGACAGTTCATTGACATGGTGAGGGACAGTTACCATAACTTTAGGAAAGCCACATTATATGATCAACGTTTAAGTGATTTGAGCTACGCAATCAACGAAGGTGTTGTTCAGGAATTCCAGATGAAAAGTGAAATTGGAAATGATATAAAAAGTCCACATGCAGCATTCAAAGAATTTTTTGTAGATAACCACTTAGACAGATATGACCACCACTTAATGTCACAAATCACTAGTTTACATGGACAAGACTTACATCCTGCTTTAGAAGATTTGTATGATGAAGGTCCCTTACATAGCGATGGAGAAATCAAAGAGTGTTTTGAGCTTGATCATTTGGGTCCCACAAAAGCCAAGCCTTTGAATGTTAAAGCCGCGACAAAAGCTATTAAGGAAAAAAAGAAAGCCAGCCGTGAAAAACGTAGAGCTTTGAAAGAATCAAACATGAAACAAGATATAAAGCAGTTGGAGCAACGAGGGAAGCAAGAAGCATTTCAGAAACTTTTTATTTCACATCTGCAGCTGTTATGTTCACTGCACATGATAAATGAGGGCCGACGAGTATTATTACACTATAGGCGTAAAAGCACCAAACCGAATCAACCAAAAGTGACAGATGTTAAGATATATAACACCTTATTACATGGATATGCAAAAATGGGAATGCTTGAAGACGTAAAAGAATTGCTTTCATATATGACAAAGGATAACATCCAACCTGACGCGCAGACATTTGCGGCAGTCTTCGAATGCATAGAGCGGAGTGCCAATGACAATAAGAGTACATTGCTTCACTTCTATCACAATAGAATGCAAGAGACGGGCATATCTTTGAACGATCTCATGGACAAAACTACATTTCAACATGATCAACATGAAACTGTACTCAGCGCGATACAGCGAATACAACCGGGATTCCAGCCGCAATACACGCCTCCAATACTAGACTACGAATGTACATTACTTGAGAAACTCAAACTAAGCAATGTTGAAAATAGATTAGGCTTATTAAAATCACCGTCAGAAGGATTGCTGACGCGTGAAGATATGCTACAGAAAGTCAAAGAGCAAATACAGGTAGAACTGAAAGGAGAAATCGAAGTAGAGAATATCAACGTCAAAGATGTCGAGTCAAAGACTGTTCAATTTTGTCGTGAGAAGCTACAAGAGATCGAAAACGAGTGGCGGGTTGTTATTAAAGAAGCTTTTGTTCGCAATATTGGAACCTTGAAATCACAGAGTAAGGCTTCACATTCAGCTATTTCTCTGTACCCTTATCTGAAAGTGTTGGAGGTGGATCAATTCGTAGAACTGGTTATGTCTGAAATAAGTAAATTGGTTGACGGGAGCGAAACGTACAGTCCCACACTGAAAGTTTTACAGCGCGAGTTGGGTACTCTAGTATATCAAAAGTATCAAATAGAACAATACAGTAGAAACGGTGTCCTGCAAAAAATACAGCAAATATACGAGAAATATTGCGACTGGTATGTGAACAGACATTCTGTGGACGACTCGGGTCTTCCTTACAACGGTCGCCAAGTGTGGCAGGCTTTATTACACAAGTACAGGGGAGGACCTAGTTTAGATATGGCAGAAACACCGTGGCCGATGGAAATAAGACAAAACATAGGAAAGTTCCTGTATAATATTATTATAAATGATGTAAAAATTGATGTGAACTTGTTCAAAGCCAAAGCAAACGTCAAGAAGCTGCCAGCGGTGTACAAGGTGCACCGGCCGTGGGGTCGCGCCGTGCGGCTGGAGTTGAAGCCGCACCCCGCGCTGTGCCGCGTGTGGGAGGGCGCGGCCCGGCCCGGCCTGCGCCTGCGCGCCGCGCTCGTGCCTGCCGCCGCGCCGCCCGCGCCCTGGGCCGCGCCCGACGCCGGCGCCTACCTGCTCACCAGGACCTCGCTCATCAGGATGCCTCATTACATAATGAATCAATGGAAACGCATCGAGGAAGCTCCTAAGCAATCCCTGTACCCTGTGTTGGACAGTCTCAATCAACTTGGAGAAGTGCCCTGGGTTATCAACACAAGGATACTCGACTTACAGCTTCAAATATTTAGGTCCGGCGGCAATAAGAAGCTGGACATACCTCCGCCGGCGTCGTCCCTGGACACGTCGAAGTTCCAAGACCAAGGGGCGGACAGCATGAGCGCTTTCAAGCGGCGGCTCACGATCAACCGGGCGCGGGCCGAGATGCACTCGCTGTGGTGCGACATGCTCTACAAGCTCTCGCTTGCCAACTATTTTAGAGAGCGCACGTTTTGGTTGCCGCACAACATGGACTTCCGCGGGCGCGTGTACGCGTGCGGCCCGCACGTGTCCGTGCTGGGCGCCGACGCGCAGCGCGCCCTGCTGCGGTTCGCGCAGCCGCGCCCGCTGGGACCGGACGGCCTCAGGTGGCTGAAGCTCCACGCCGTCAACCTCACGGGCGCGCTGAAGAAAAGCACCATACAACAGAGATTGGAATACGCAGAAAGTATAACGGACATGTTTTTGGACTCTGCTGATAATCCGCTAGAGGGCAAAGGATGGTGGACCAAATCGGAGGAGCCTTGGCAAACTCTCGCCTGCTGCATAGAGATAGCTAATGCAATCCGCTCACCTAATCCTGAAGAGTACATGTGCGGGTTCCCGGTGCATCAGGACGGCTCGTGCAATGGACTGCAGCACTACGCCGCGCTCGGGGGAGACGAGGCCGGTGCCGCCGCCGTCAACCTGGCGCCCGGGGACCGCCCGTGCGACGTGTACAGCGCCGTCGCGGCACTGGTGGAGGAGATGAGGGCGCGCGACGCGGCGGCGGGCGTGGGGCCGGCGATCATACTCGAGAACTTCGTCCGTCGGAAGGTCATCAAGCAAACCGTGATGACGACTGTGTACGGCGTCACGAAATTCGGCGCGAGATTGCAAATCGCTAAGCAACTCAAAGACATCGACGACTTCCCGAAGGAGCACGTGTGGGCGTGCTCGCAGTACCTCACGGCGAAGACGTTCGACAGCCTCCGGGAGATGTTCACGTCCACCAAACAAATACAAGACTGGTTTACTGACTGCGCCAAAGTGATATCGGGCGTATGCGGCGAGAGCGTGGAGTGGGTGACGTCACTGGGCCTGCCCGTGGTGCAGCCCTACTACCGGCGCGCGCCGCCGCACCTGCACTTCGCCGCGCCCGTCGACCAGCAACAACGCCCGTGCACTATGAAGCAGCGCAACGCATTCCCGCCGAACTTCATCCACTCGCTGGACTCGACGCACATGATGCTGACGGGCCTGCACTGCGCGGCCGCCGGCCTCAGCTTCGTGTCGGTGCACGACTGCTTCTGGACGCACCCCGACACCGTCCACCGGATGAACAAGATATGTCGGGAACAATTCGTGGCGCTACATTCTCAGCCTATCTTAGAGGACTTATCGAATTTTCTTGTCCAAAGGTTCAGCTACCCTGAAACTGAGTTACAAGACGGCAACTCTGGCGCTTCTAACAAGAAACGAGTCAATAATCTGCTTCGAAAAGTACCCAGTAAAGGTAACTTCGACATAAACAGTGTACTGGATTCAGTATATTTCTTCAGCTAG

Protein

MHRLISARSLYQSSLHGTSVLPPNNSTTTITTSNITCSFCRKILLGRNYAENIFSVRHQSTKTASILRSQKKKAKHKGYKKYGEVLEVGDKAMTEMQVSISKLHAAHLSKLAASPVSLGQLHQLTTKPKKPVNVQLDTELLQRVREKILNNSSDNIKLVSLEDDKCALIYTHHKITNLEEKFKKRQFIDMVRDSYHNFRKATLYDQRLSDLSYAINEGVVQEFQMKSEIGNDIKSPHAAFKEFFVDNHLDRYDHHLMSQITSLHGQDLHPALEDLYDEGPLHSDGEIKECFELDHLGPTKAKPLNVKAATKAIKEKKKASREKRRALKESNMKQDIKQLEQRGKQEAFQKLFISHLQLLCSLHMINEGRRVLLHYRRKSTKPNQPKVTDVKIYNTLLHGYAKMGMLEDVKELLSYMTKDNIQPDAQTFAAVFECIERSANDNKSTLLHFYHNRMQETGISLNDLMDKTTFQHDQHETVLSAIQRIQPGFQPQYTPPILDYECTLLEKLKLSNVENRLGLLKSPSEGLLTREDMLQKVKEQIQVELKGEIEVENINVKDVESKTVQFCREKLQEIENEWRVVIKEAFVRNIGTLKSQSKASHSAISLYPYLKVLEVDQFVELVMSEISKLVDGSETYSPTLKVLQRELGTLVYQKYQIEQYSRNGVLQKIQQIYEKYCDWYVNRHSVDDSGLPYNGRQVWQALLHKYRGGPSLDMAETPWPMEIRQNIGKFLYNIIINDVKIDVNLFKAKANVKKLPAVYKVHRPWGRAVRLELKPHPALCRVWEGAARPGLRLRAALVPAAAPPAPWAAPDAGAYLLTRTSLIRMPHYIMNQWKRIEEAPKQSLYPVLDSLNQLGEVPWVINTRILDLQLQIFRSGGNKKLDIPPPASSLDTSKFQDQGADSMSAFKRRLTINRARAEMHSLWCDMLYKLSLANYFRERTFWLPHNMDFRGRVYACGPHVSVLGADAQRALLRFAQPRPLGPDGLRWLKLHAVNLTGALKKSTIQQRLEYAESITDMFLDSADNPLEGKGWWTKSEEPWQTLACCIEIANAIRSPNPEEYMCGFPVHQDGSCNGLQHYAALGGDEAGAAAVNLAPGDRPCDVYSAVAALVEEMRARDAAAGVGPAIILENFVRRKVIKQTVMTTVYGVTKFGARLQIAKQLKDIDDFPKEHVWACSQYLTAKTFDSLREMFTSTKQIQDWFTDCAKVISGVCGESVEWVTSLGLPVVQPYYRRAPPHLHFAAPVDQQQRPCTMKQRNAFPPNFIHSLDSTHMMLTGLHCAAAGLSFVSVHDCFWTHPDTVHRMNKICREQFVALHSQPILEDLSNFLVQRFSYPETELQDGNSGASNKKRVNNLLRKVPSKGNFDINSVLDSVYFFS

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic Activity

a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)

Similarity

Belongs to the phage and mitochondrial RNA polymerase family.

Feature

chain  DNA-directed RNA polymerase

Uniprot

A0A2W1C0I8   A0A194Q4A8   A0A2H1WA38   A0A2J7QZW4   A0A0L0CGE4   A0A1I8MYH9   + More
T1PDF8   A0A1I8NZR8   A0A067RGF5   A0A1D2NKD0   B4MZP1   B3MN87   A0A1Q3FEP1   B4KET7   A0A1Q3FEP6   B0W1Q8   A0A0J9TCW4   B4P304   B4Q6M5   A0A3B0K1S8   B4ID50   A0A1W4W976   A0A226DDW3   A0A0A1X790   Q9VPW4   W8B9K7   B4JQF3   A0A0Q9WMI3   B4LUB0   B3N8B5   J9K183   A0A1A9UTY2   W8B561   A0A0M4E4F5   Q29LI1   A0A2S2PVK5   Q17K00   A0A1B0FKB4   A0A182XZP2   A0A182MFM0   A0A1A9Z5Y9   A0A1S4EZY5   A0A336LVW7   A0A182H1N3   A0A182PJQ2   A0A182W7N9   A0A182RU78   A0A1A9XYT6   A0A1B0BRN9   A0A182K7Z4   A0A1L8DGE7   A0A1L8DGF4   A0A182TQ74   A0A182IEE7   A0A182X1G7   A0A3B0JWN7   A0A084W7I4   A0A182V6B7   A0A1L8DGQ1   A0A1L8DGH1   A0A1S4GWY4   A0A182L2L8   A0A182JDP8   W5JUE5   A0A182FN93   A0A146KMB7   A0A023F1S2   A0A0A9YES9   A0A2M4AAR2   A0A2M4B9U8   T1I9T5   A0A1B0DJA6   A0A1A9WUC8   A0A182QNJ3   A0A2M4B9T7   A0A0K8SQM1   A0A182MZA1   A0A069DY84   A0A1J1IPV8   A0A1W4WJ77   A0A0C9RBI4   U5EW80   D6WV41   A0A224X5N4   A0A2R5L9Z5   A0A293M6Y9   A0A131YL62   A0A224YWY5   A0A1E1X3T0   A0A0P5E768   A0A0P5SZN7   A0A0P5C1Z0   A0A0N8EIA8  

EC Number

2.7.7.6

Pubmed

28756777    26354079    26108605    25315136    24845553    27289101    + More
17994087    22936249    17550304    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    15632085    17510324    25244985    26483478    24438588    12364791    20966253    20920257    23761445    26823975    25474469    25401762    26334808    18362917    19820115    26830274    28797301    28503490   

EMBL

KZ149902    PZC78476.1    KQ459562    KPI99844.1    ODYU01007282    SOQ49920.1    + More
NEVH01009067    PNF34114.1    JRES01000438    KNC31315.1    KA646791    AFP61420.1    KK852521    KDR22103.1    LJIJ01000017    ODN05738.1    CH963920    EDW77826.2    CH902620    EDV31044.1    GFDL01009031    JAV26014.1    CH933807    EDW12987.1    GFDL01009021    JAV26024.1    DS231823    EDS26609.1    CM002910    KMY87415.1    CM000157    EDW87211.1    CM000361    EDX03291.1    OUUW01000004    SPP79909.1    CH480829    EDW45476.1    LNIX01000021    OXA43762.1    GBXI01007123    JAD07169.1    AE014134    BT011381    AAF51421.1    AAR96173.1    GAMC01012827    JAB93728.1    CH916372    EDV99133.1    CH940649    KRF82011.1    EDW65096.1    CH954177    EDV57302.1    ABLF02027175    GAMC01012828    JAB93727.1    CP012523    ALC38734.1    CH379060    EAL34064.2    GGMS01000365    MBY69568.1    CH477229    EAT46999.1    CCAG010022131    AXCM01003707    UFQS01000236    UFQT01000236    SSX01819.1    SSX22196.1    JXUM01103706    JXUM01103707    KQ564827    KXJ71689.1    JXJN01019166    GFDF01008552    JAV05532.1    GFDF01008551    JAV05533.1    APCN01005201    SPP79910.1    ATLV01021248    KE525315    KFB46178.1    GFDF01008554    JAV05530.1    GFDF01008553    JAV05531.1    AAAB01008964    ADMH02000464    ETN66374.1    GDHC01021983    JAP96645.1    GBBI01003292    JAC15420.1    GBHO01013468    JAG30136.1    GGFK01004555    MBW37876.1    GGFJ01000649    MBW49790.1    ACPB03008502    AJVK01006299    AJVK01006300    AJVK01006301    AJVK01006302    AXCN02002070    GGFJ01000648    MBW49789.1    GBRD01010699    JAG55125.1    GBGD01000167    JAC88722.1    CVRI01000054    CRL00537.1    GBYB01004246    JAG74013.1    GANO01003070    JAB56801.1    KQ971357    EFA08534.1    GFTR01008640    JAW07786.1    GGLE01002172    MBY06298.1    GFWV01011785    MAA36514.1    GEDV01008514    JAP80043.1    GFPF01007328    MAA18474.1    GFAC01005258    JAT93930.1    GDIP01147221    JAJ76181.1    GDIP01133235    LRGB01000248    JAL70479.1    KZS20070.1    GDIP01177327    JAJ46075.1    GDIQ01024004    JAN70733.1   

Proteomes

UP000053268    UP000235965    UP000037069    UP000095301    UP000095300    UP000027135    + More
UP000094527    UP000007798    UP000007801    UP000009192    UP000002320    UP000002282    UP000000304    UP000268350    UP000001292    UP000192221    UP000198287    UP000000803    UP000001070    UP000008792    UP000008711    UP000007819    UP000078200    UP000092553    UP000001819    UP000008820    UP000092444    UP000076408    UP000075883    UP000092445    UP000069940    UP000249989    UP000075885    UP000075920    UP000075900    UP000092443    UP000092460    UP000075881    UP000075902    UP000075840    UP000076407    UP000030765    UP000075903    UP000075882    UP000075880    UP000000673    UP000069272    UP000015103    UP000092462    UP000091820    UP000075886    UP000075884    UP000183832    UP000192223    UP000007266    UP000076858   

PRIDE

Q9VPW4   

Pfam

PF00940   RNA_pol        + More
PF13041   PPR_2
PF14700   RPOL_N
PF13812   PPR_3

Interpro

IPR029262   RPOL_N        + More
IPR002885   Pentatricopeptide_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR002092   DNA-dir_Rpol_phage-type       
IPR037159   RNA_POL_N_sf       

Gene 3D

1.25.40.10     1.10.1320.10    

ProteinModelPortal

A0A2W1C0I8   A0A194Q4A8   A0A2H1WA38   A0A2J7QZW4   A0A0L0CGE4   A0A1I8MYH9   + More
T1PDF8   A0A1I8NZR8   A0A067RGF5   A0A1D2NKD0   B4MZP1   B3MN87   A0A1Q3FEP1   B4KET7   A0A1Q3FEP6   B0W1Q8   A0A0J9TCW4   B4P304   B4Q6M5   A0A3B0K1S8   B4ID50   A0A1W4W976   A0A226DDW3   A0A0A1X790   Q9VPW4   W8B9K7   B4JQF3   A0A0Q9WMI3   B4LUB0   B3N8B5   J9K183   A0A1A9UTY2   W8B561   A0A0M4E4F5   Q29LI1   A0A2S2PVK5   Q17K00   A0A1B0FKB4   A0A182XZP2   A0A182MFM0   A0A1A9Z5Y9   A0A1S4EZY5   A0A336LVW7   A0A182H1N3   A0A182PJQ2   A0A182W7N9   A0A182RU78   A0A1A9XYT6   A0A1B0BRN9   A0A182K7Z4   A0A1L8DGE7   A0A1L8DGF4   A0A182TQ74   A0A182IEE7   A0A182X1G7   A0A3B0JWN7   A0A084W7I4   A0A182V6B7   A0A1L8DGQ1   A0A1L8DGH1   A0A1S4GWY4   A0A182L2L8   A0A182JDP8   W5JUE5   A0A182FN93   A0A146KMB7   A0A023F1S2   A0A0A9YES9   A0A2M4AAR2   A0A2M4B9U8   T1I9T5   A0A1B0DJA6   A0A1A9WUC8   A0A182QNJ3   A0A2M4B9T7   A0A0K8SQM1   A0A182MZA1   A0A069DY84   A0A1J1IPV8   A0A1W4WJ77   A0A0C9RBI4   U5EW80   D6WV41   A0A224X5N4   A0A2R5L9Z5   A0A293M6Y9   A0A131YL62   A0A224YWY5   A0A1E1X3T0   A0A0P5E768   A0A0P5SZN7   A0A0P5C1Z0   A0A0N8EIA8  

PDB

5OLA     E-value=0,     Score=1731

KEGG

101744865    K10908 DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] | (RefSeq) DNA-directed RNA polymeras

GO

GO:0003677   GO:0003899   GO:0006351   GO:0005739   GO:0006390   GO:0001018   GO:0034245   GO:0003676   GO:0016787   GO:0016491   GO:0016651   GO:0006334   GO:0003779   GO:0016021   GO:0005515  

PANTHER

PTHR10102  

Length:

1377

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.20236

Exp number, first 60 AAs:

0.00097

Total prob of N-in:

0.00008

outside

1  -  1377

 

 

Pi

242.770772

Theta

186.402077

Tajima's D

1.660993

CLR

0.363198

CSRT

0.823708814559272

Interpretation

Uncertain