Gene

KWMTBOMO01439  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008926

Annotation

PREDICTED:_ubiquitin_conjugation_factor_E4_B_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr3(+):10764460-10777965      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.391 Nuclear   Reliability : 1.6

CDS

ATGCTACTTAATTGGCGCGATGGCTTCATGTTGAACGTGTGTTCGGTGTTACAATTGCTGTCCGTCCGCATTAAGCTGGAGCGCGTGTACCCGCTGTACACTTTCCAACCGGACTCGTGGGCGAACGTCCGCGACGAGACTAGACTGTACTTCACCGCGCAAGAGGCCCAGGACTGGCTCGATGAACTCAATAACGATCCGAACCACAAGTGGCCCGAGGCTAAATTCCAGACTGTTTGTTGGTTCCTGACGCTGCACATGCATCACGTGGCACTCATTCCTGCATTACACACACATCAAAGACGTATTCGCGCTTTCCGTGACCTACAGAAGGTAATCGAGGAACTGATGGCTGCAGAACCACAATGGAGAAACAGTTTTTCAGCTCTGCGGAATCGAGAACTACTGAGACGTTGGAGAAGGCAGATCAAACGTCTACACAGATCGAAGCAGTGCGCGGAGACGGCGCTGCTGGAGGGCGAGGTGATGCGGCGCAGCGTGCAGTTCTACTCGTCAGTGTGCGCGCTGCTGTCGCGGCAGCTGGACGCGTCCGCCGGGGAGGGCCCGCCGGCGCTCGCCTTCCGCGCCACGCCCGAGTGGTACGTCGAGGACGTCGCCGAGTTCATGCTCTTCGCTGTGCAATACGTACCTCAAATAGTCGCTGAATACATAGAGGATCCAATCATAACGTGGCTCCTCAGCGCCATCTGCAATTCCCATCTCATCAAAAATCCATATCTTGTTGCGAAAATTGTCGAAGTGCTTTTCGTGATAAACCTTTCGGTTCCGCTGAAGCTGAAAAACGTATACGAAAAGTTCATGGACCATCCGATGTCGCAAAACGAGCTGCCCAGCGCTTTGATGAAATTCTATACGGACATTGAGACTACGGGCCAGAGCACGGAGTTCTACGACAAGTTCACTATTCGATTCCATATCAGTATCATATTGAAGGGAATGTGGGAACGACCCATACATAAACAGGCCATCGTGAAGGAATCCCGTTCCGGTCGTCAGTTTGTGAAGTTCATCAACATGTTGATGAACGACACCACATTCCTACTCGACGAGTGTCTCACGTACCTGAAGCGCATCCACGAGGCGCAGGAGGGGGCGGCGGGCGGGGAGACGCGCGCCCGCACGCTCGCGCAGGACGAGAGGCAGTGCCGCTCCTACCTCACGCTCGCCAGAGAAACGGTTGACATGCTGGAGTACTTGACGGTGGAGATCAAAGAGCCGTTCTTACGCAGCGAGCTGGTGGACCGGCTCGCCTCCATGCTCAATTTCAACCTGCAGCAGCTCTGCGGCCCCAAGTGTAAAAACCTTAAGGTCCGCCGGCCCGAGAAGTACGGCTGGGAGCCGCGGCGGCTGCTGAGTCAGCTCGTGGACATCTACCTGCACCTGGACTCCCCGCAGTTCCACGCCGCGCTGGCCGCCGACGAGAGATCGTTCCGGAAAGAACTGTTTGAAGAGGCGGCCGTGCGGCTCACAAAGTCCTACATAAAAACACCATCAGAAATAGAACGCTTTAAAGCGCTCGCAGACAATGCCTATCAAATTGCTGTGTCGAACCAGCAGAAAAGCGACGAATTTGCAGACGCCCCCGAAGAGTTCCGGGATCCACTCATGGACACGCTCATGACGGATCCCGTGGTTTTACCCTCTGGGAAGGTAATGGACAGGTCGGTGATCTTACGTCATCTACTGAACAGTGCCACGGACCCCTTCAACCGACAGCCTCTCTCCGAGGACCAACTACGTCCAGCGACTGAACTCAAAGAAAGAATCCAACAATGGCAGCGCGAGAAAAAATCAACGTAA

Protein

MLLNWRDGFMLNVCSVLQLLSVRIKLERVYPLYTFQPDSWANVRDETRLYFTAQEAQDWLDELNNDPNHKWPEAKFQTVCWFLTLHMHHVALIPALHTHQRRIRAFRDLQKVIEELMAAEPQWRNSFSALRNRELLRRWRRQIKRLHRSKQCAETALLEGEVMRRSVQFYSSVCALLSRQLDASAGEGPPALAFRATPEWYVEDVAEFMLFAVQYVPQIVAEYIEDPIITWLLSAICNSHLIKNPYLVAKIVEVLFVINLSVPLKLKNVYEKFMDHPMSQNELPSALMKFYTDIETTGQSTEFYDKFTIRFHISIILKGMWERPIHKQAIVKESRSGRQFVKFINMLMNDTTFLLDECLTYLKRIHEAQEGAAGGETRARTLAQDERQCRSYLTLARETVDMLEYLTVEIKEPFLRSELVDRLASMLNFNLQQLCGPKCKNLKVRRPEKYGWEPRRLLSQLVDIYLHLDSPQFHAALAADERSFRKELFEEAAVRLTKSYIKTPSEIERFKALADNAYQIAVSNQQKSDEFADAPEEFRDPLMDTLMTDPVVLPSGKVMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQREKKST

Uniprot

H9JHC9   A0A2W1BXT7   A0A194RMU7   A0A2A4JUR1   A0A212F6R7   A0A194Q4C0   + More
A0A1E1W355   A0A2J7Q935   A0A1Y1KTR1   A0A1B6JCG4   A0A1B6IW65   A0A2H1WTC0   A0A1B6IG44   A0A067QFP8   D6WWC9   A0A1B6DFQ4   A0A1B6DV73   A0A1W4WJE3   A0A1W4WV99   A0A0K8SK88   T1HHA6   A0A0A9Z5W3   A0A0V0G5H1   A0A069DY57   A0A2P8XR47   A0A023F2Z1   A0A0T6B3D5   A0A1B6CHV5   A0A026WSP6   E2C5F1   A0A151I7A0   E2AX73   A0A0C9RP36   A0A154PSF2   A0A0L7QUF8   F4X4W9   W5J924   A0A1L8DSG4   A0A195ETA7   E0VKR5   A0A2M4ACA4   A0A2M4ACU5   A0A1L8DSH7   A0A182F4G8   A0A151HXX4   A0A2M4B9X5   A0A2M4BAT7   A0A2M4BB95   A0A1Q3F1Q0   A0A1Q3F2K7   Q174F4   A0A1Q3F348   A0A1S4FF65   A0A232F678   A0A182QL45   A0A182YGZ5   A0A084VP75   A0A182JTH8   A0A182L295   A0A182HVD7   A0A182WTE4   A0A182UMJ2   K7J0Z8   A0A1S4GWH0   Q7Q3H0   A0A182U099   A0A1S4JQI9   A0A182NE96   A0A182JGK6   B0WSH6   A0A182RBS6   A0A336M9J2   A0A182G419   U4UBZ5   A0A1S3DUM2   A0A182SLQ7   A0A336MYQ4   A0A2A3ELM7   A0A182W9V6   A0A182MQY2   A0A151WL46   A0A088A119   A0A1D2N7W9   N6TMI5   T1ISF9   A0A226EN05   A0A0P5HS69   A0A0P5SEY3   A0A0N8CT40   A0A0P4ZWA9   A0A0P5VCZ2   A0A0N8BS74   A0A0P5UX62   A0A0P5HD26   A0A0P4YQ43   A0A0P4ZD60   A0A0P4YJG0   A0A0P5AI35   A0A0P5DF91   A0A0N7ZX65  

Pubmed

19121390    28756777    26354079    22118469    28004739    24845553    + More
18362917    19820115    25401762    26823975    26334808    29403074    25474469    24508170    30249741    20798317    21719571    20920257    23761445    20566863    17510324    28648823    25244985    24438588    20966253    20075255    12364791    26483478    23537049    27289101   

EMBL

BABH01012484    BABH01012485    KZ149902    PZC78465.1    KQ459989    KPJ18655.1    + More
NWSH01000622    PCG75223.1    AGBW02009978    OWR49430.1    KQ459562    KPI99854.1    GDQN01009641    JAT81413.1    NEVH01016943    PNF25092.1    GEZM01073842    GEZM01073841    JAV64789.1    GECU01010814    JAS96892.1    GECU01016520    JAS91186.1    ODYU01010861    SOQ56222.1    GECU01021820    GECU01019231    JAS85886.1    JAS88475.1    KK853598    KDR06412.1    KQ971361    EFA08149.1    GEDC01012791    JAS24507.1    GEDC01007737    JAS29561.1    GBRD01012604    JAG53220.1    ACPB03014452    GBHO01004328    GDHC01004159    JAG39276.1    JAQ14470.1    GECL01002870    JAP03254.1    GBGD01000212    JAC88677.1    PYGN01001493    PSN34482.1    GBBI01003129    JAC15583.1    LJIG01016045    KRT81780.1    GEDC01024296    JAS13002.1    KK107119    QOIP01000009    EZA58681.1    RLU18408.1    GL452770    EFN76764.1    KQ978426    KYM94026.1    GL443520    EFN61956.1    GBYB01008921    JAG78688.1    KQ435127    KZC14831.1    KQ414735    KOC62250.1    GL888679    EGI58542.1    ADMH02002093    ETN59299.1    GFDF01004666    JAV09418.1    KQ981993    KYN31114.1    DS235250    EEB13971.1    GGFK01005090    MBW38411.1    GGFK01005107    MBW38428.1    GFDF01004661    JAV09423.1    KQ976730    KYM76411.1    GGFJ01000688    MBW49829.1    GGFJ01001008    MBW50149.1    GGFJ01001172    MBW50313.1    GFDL01013560    JAV21485.1    GFDL01013317    JAV21728.1    CH477412    EAT41440.1    GFDL01013065    JAV21980.1    NNAY01000821    OXU26331.1    AXCN02000864    ATLV01014984    KE524999    KFB39769.1    APCN01002505    AAAB01008964    EAA12918.4    DS232071    EDS33834.1    UFQT01000758    SSX27014.1    JXUM01142832    JXUM01142833    JXUM01142834    JXUM01142835    JXUM01142836    KQ569486    KXJ68611.1    KB632286    ERL91449.1    UFQT01004015    SSX35426.1    KZ288215    PBC32628.1    AXCM01000972    KQ982974    KYQ48588.1    LJIJ01000158    ODN01348.1    APGK01018197    KB740071    ENN81694.1    JH431430    LNIX01000003    OXA58578.1    GDIQ01229482    JAK22243.1    GDIP01140577    JAL63137.1    GDIP01101527    JAM02188.1    GDIP01207718    JAJ15684.1    GDIP01101525    JAM02190.1    GDIQ01150067    JAL01659.1    GDIP01107075    JAL96639.1    GDIQ01231685    JAK20040.1    GDIP01224413    JAI98988.1    GDIP01215573    JAJ07829.1    GDIP01228974    JAI94427.1    GDIP01203816    JAJ19586.1    GDIP01157268    JAJ66134.1    GDIP01203817    JAJ19585.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000007151    UP000053268    UP000235965    + More
UP000027135    UP000007266    UP000192223    UP000015103    UP000245037    UP000053097    UP000279307    UP000008237    UP000078542    UP000000311    UP000076502    UP000053825    UP000007755    UP000000673    UP000078541    UP000009046    UP000069272    UP000078540    UP000008820    UP000215335    UP000075886    UP000076408    UP000030765    UP000075881    UP000075882    UP000075840    UP000076407    UP000075903    UP000002358    UP000007062    UP000075902    UP000075884    UP000075880    UP000002320    UP000075900    UP000069940    UP000249989    UP000030742    UP000079169    UP000075901    UP000242457    UP000075920    UP000075883    UP000075809    UP000005203    UP000094527    UP000019118    UP000198287   

PRIDE

H9JHC9   

Pfam

PF10408   Ufd2P_core        + More
PF04564   U-box
PF03637   Mob1_phocein
PF12017   Tnp_P_element

Interpro

IPR003613   Ubox_domain        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR019474   Ub_conjug_fac_E4_core       
IPR005301   MOB_kinase_act_fam       
IPR036703   MOB_kinase_act_sf       
IPR021896   Transposase_37       

SUPFAM

SSF101152   SSF101152       

Gene 3D

3.30.40.10     1.20.140.30    

ProteinModelPortal

H9JHC9   A0A2W1BXT7   A0A194RMU7   A0A2A4JUR1   A0A212F6R7   A0A194Q4C0   + More
A0A1E1W355   A0A2J7Q935   A0A1Y1KTR1   A0A1B6JCG4   A0A1B6IW65   A0A2H1WTC0   A0A1B6IG44   A0A067QFP8   D6WWC9   A0A1B6DFQ4   A0A1B6DV73   A0A1W4WJE3   A0A1W4WV99   A0A0K8SK88   T1HHA6   A0A0A9Z5W3   A0A0V0G5H1   A0A069DY57   A0A2P8XR47   A0A023F2Z1   A0A0T6B3D5   A0A1B6CHV5   A0A026WSP6   E2C5F1   A0A151I7A0   E2AX73   A0A0C9RP36   A0A154PSF2   A0A0L7QUF8   F4X4W9   W5J924   A0A1L8DSG4   A0A195ETA7   E0VKR5   A0A2M4ACA4   A0A2M4ACU5   A0A1L8DSH7   A0A182F4G8   A0A151HXX4   A0A2M4B9X5   A0A2M4BAT7   A0A2M4BB95   A0A1Q3F1Q0   A0A1Q3F2K7   Q174F4   A0A1Q3F348   A0A1S4FF65   A0A232F678   A0A182QL45   A0A182YGZ5   A0A084VP75   A0A182JTH8   A0A182L295   A0A182HVD7   A0A182WTE4   A0A182UMJ2   K7J0Z8   A0A1S4GWH0   Q7Q3H0   A0A182U099   A0A1S4JQI9   A0A182NE96   A0A182JGK6   B0WSH6   A0A182RBS6   A0A336M9J2   A0A182G419   U4UBZ5   A0A1S3DUM2   A0A182SLQ7   A0A336MYQ4   A0A2A3ELM7   A0A182W9V6   A0A182MQY2   A0A151WL46   A0A088A119   A0A1D2N7W9   N6TMI5   T1ISF9   A0A226EN05   A0A0P5HS69   A0A0P5SEY3   A0A0N8CT40   A0A0P4ZWA9   A0A0P5VCZ2   A0A0N8BS74   A0A0P5UX62   A0A0P5HD26   A0A0P4YQ43   A0A0P4ZD60   A0A0P4YJG0   A0A0P5AI35   A0A0P5DF91   A0A0N7ZX65  

PDB

2QJ0     E-value=2.65325e-65,     Score=633

KEGG

101739047    K10597 ubiquitin conjugation factor E4 B [EC:2.3.2.27] | (RefSeq) ubiquitin conjugation factor E4 B

PATHWAY

04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)
04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0006511   GO:0000151   GO:0034450   GO:0030433   GO:0005634   GO:0000209   GO:0005737   GO:0004803   GO:0006313   GO:0004842   GO:0016567   GO:0016787   GO:0016491   GO:0016651   GO:0006334   GO:0003779   GO:0016021  

Length:

606

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15524

Exp number, first 60 AAs:

0.01072

Total prob of N-in:

0.00706

outside

1  -  606

 

 

Pi

298.898751

Theta

184.312871

Tajima's D

2.10442

CLR

0.040158

CSRT

0.897755112244388

Interpretation

Uncertain