Gene

KWMTBOMO01438  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008926

Annotation

PREDICTED:_ubiquitin_conjugation_factor_E4_B_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr3(+):10755470-10760934      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.422

CDS

ATGAGTGAATTGAGCCAAGAGGAGATACGAAGAAGACGCCTGGTTCGTCTCGCAGCTCTTAATAGTGCAGGATCAGTGCCTACTTCAGCTAGTCCTCCGGTAACCCCTGGCGCCTCAATTCCTTCTCCTGACCTACACAGTCCACAGCAACCCTTACGATTGTCCCCAGCTCCTTCAACTAGAAGCTCTACAGAACCCACCACTCCTGACACAGCGAATGCAAATCAAGAGCCCAATTACTCAGAAGAAGTCAGGTCAGATCAATCAGATCAAAATAAAATATCAGCAGACGGTTTAATTGTAACAGAAAAAACTGACAACAATATATTGGATGAAATGCCAGACACAAAAATGACAGATCTTACACAAACACGACAGTACAGTAGCTTTGACTCAATGGGTGATGACACATTGATAAGTTGTGGGTCTGTGAGAGTGGGAAGCTTACCGCAAAATACTGTTGCTGGTTCAGAAGGGAGTTCTACAAGGGAAGATAGCACATCAAGATCAATATCTCCACCACAGTTTGTTGAGCCATCACCTGTACGACCAAGACAAACAAATGCTTCACCAAGTTGTTCTCGTCGTTCTTTGTCAATGGAAGTAGATGATGTGTCTGAAAGAAATTCTCAATCTGAAGCTCAGCAAGAACCAATGGAGGTTGAAGATGATTCATCAGCATCTCCGGCACGTAAAATACATAGATCTCGAACTGTCAGTTGCACAGAGTTGACAGAAGAGCAATTACGCACCATTGTATCAAAGATTCTTCAAGTTTCATGGTCAGATGACAGTGCAGGTGGGATTTTTGTGCCAACAGTAGCAGCATCGTTACTTGATAATCCAAAACTTTCTCTGACTGAGCTCATATCTGAAGCTTTAATGGATGTCATAATACAAATAGCAGATGGTGGTGATCCATTGAATCAAAAACTTACTGCAATTATTGAGACTTCAAAGAACTTGAATGAGGAGAATGGTGAGGACTCTTTGTCCAATTCAACAAGTGTAGAAACAGATGCGGATAAACCTGAATGCCCATCACCAGCCCTACCAATCCAGAAAACGATGCCCACACAAGGCTTAGTTGTTAGTTATTTACTTCAATTCTACAATAATGTAAACTCATATGAAAGAGAACACCCCAAGAAGAGTTCAGAACCACCTTTGAGTGATTTGCTCCAAAGTTTGAGAACTATACTGGTCAATCATTTGGTACTAGTGTTACAAGGAAGGTTCGAATTGGAAAAGTGCAGGAAATCACCATTATTACCTTACATATTGATTGGGAATGCACCAACGGGCCTCATCCCAGAATTACTGCTTGCTACATATCTTGATAAAGAAATATTTGATGAGGTGTTTACTTGGCTGGTGCTTGGAGTTCGTGAAGAGATGCGCAGTGCATTGGGCACGGGCCACGTGTGCGGCGGGGCGGCGTTGCGAGCTCTACACGCGCTGTGCGAGGTGCGGGCGGGGGCTCGTGGCACGCGCCGCCCTGTGTGCGAGCTGCTGGCGCGCCTACCCTCGTTCTGTCCGGACCCAGTCACCTCAGCACCGGGCCGCGAGATCGCACGCGTGAGCTTCCTCGGGCCCTTCTTCTCAATATCGTTGTTCGCGGAAGAGAACCCCCGTTTGGCAGAGCGTCTGTTCTCTTCGGGAACCGGAGACAGAAGCTTGGCCTTTGCTCTGCAACGGGAAGTGGAAGCCAGTCGCAATACTCTGCACAACATCTGTCATAATATCCTGGTCTGTCCCGAGGCTAGGGAGCCTTTCCTAAACTATTTCGCGGCCATACTGCAGCGAAATGAACGACGCGCACAACTGCAGACTGATGAACGTACGCTCGCTGGTGAGTTAAAAATGATCCCCGTAACGAAATCTATATACATATAA

Protein

MSELSQEEIRRRRLVRLAALNSAGSVPTSASPPVTPGASIPSPDLHSPQQPLRLSPAPSTRSSTEPTTPDTANANQEPNYSEEVRSDQSDQNKISADGLIVTEKTDNNILDEMPDTKMTDLTQTRQYSSFDSMGDDTLISCGSVRVGSLPQNTVAGSEGSSTREDSTSRSISPPQFVEPSPVRPRQTNASPSCSRRSLSMEVDDVSERNSQSEAQQEPMEVEDDSSASPARKIHRSRTVSCTELTEEQLRTIVSKILQVSWSDDSAGGIFVPTVAASLLDNPKLSLTELISEALMDVIIQIADGGDPLNQKLTAIIETSKNLNEENGEDSLSNSTSVETDADKPECPSPALPIQKTMPTQGLVVSYLLQFYNNVNSYEREHPKKSSEPPLSDLLQSLRTILVNHLVLVLQGRFELEKCRKSPLLPYILIGNAPTGLIPELLLATYLDKEIFDEVFTWLVLGVREEMRSALGTGHVCGGAALRALHALCEVRAGARGTRRPVCELLARLPSFCPDPVTSAPGREIARVSFLGPFFSISLFAEENPRLAERLFSSGTGDRSLAFALQREVEASRNTLHNICHNILVCPEAREPFLNYFAAILQRNERRAQLQTDERTLAGELKMIPVTKSIYI

Uniprot

H9JHC9   A0A2H1WTC0   A0A2W1BXT7   A0A212F6R7   A0A194Q4C0   A0A194RMU7   + More
A0A2J7Q935   U4UBZ5   D6WWC9   N6TMI5   A0A1Y1KTR1   A0A1B6K0K7   A0A151I7A0   A0A1W4WJE3   A0A1W4WV99   K7J0Z8   A0A151HXX4   A0A232F678   A0A1B6LIT3   A0A1B6JCG4   A0A1B6EPW3   A0A151WL46   F4X4W9   A0A195ETA7   E2C5F1   A0A026WSP6   A0A154PSF2   E2AX73   A0A0L7QUF8   A0A0A9ZBU6   A0A0A9Z5W3   A0A0K8SK88   A0A0C9RP36   H2TTD7   A0A2U9C0N8   A0A3B3CYX4   A0A3B3RKJ9   A0A3B5LDW3   A0A1W5A1E0   A0A146NEM1   A0A3B4FGU2   A0A3P9C7H0   I3J263   W5U9U8   A0A3B5A698   A0A146P4M1   A0A3B3VHU1   A0A3B5R0B0   A0A3B3XHY1   A0A3P8TM89   W5L1A7   A0A3P8R8D8   A0A3B3U4D3   G3NW73   A0A0S7EZN9   A0A3B4CZR9   A0A1A8AZ35   A0A210R349   V9KRM8   A0A1A7YJG2   A0A1A8D464   A0A1A7WSW0   A0A1A8I705   A0A0S7ESY3   A0A0S7F1A9   A0A0S7EZQ0   A0A0S7ETK3   A0A3P9KUE0   A0A3B3HLZ0   A0A3P9IWJ9   A0A0S7ESZ7   H3DCI3   A0A1A8REV0   A0A1A8QGF4   A0A1A8FPM8   W5MIE3   A0A3B4TVC5   A0A3B4WH21   Q8JIX0   F1Q5A9   A0A3P9PN37  

Pubmed

19121390    28756777    22118469    26354079    23537049    18362917    + More
19820115    28004739    20075255    28648823    21719571    20798317    24508170    30249741    25401762    26823975    21551351    29451363    29240929    25186727    23127152    23542700    25329095    28812685    24402279    17554307    15496914    23594743   

EMBL

BABH01012484    BABH01012485    ODYU01010861    SOQ56222.1    KZ149902    PZC78465.1    + More
AGBW02009978    OWR49430.1    KQ459562    KPI99854.1    KQ459989    KPJ18655.1    NEVH01016943    PNF25092.1    KB632286    ERL91449.1    KQ971361    EFA08149.1    APGK01018197    KB740071    ENN81694.1    GEZM01073842    GEZM01073841    JAV64789.1    GECU01002721    JAT04986.1    KQ978426    KYM94026.1    KQ976730    KYM76411.1    NNAY01000821    OXU26331.1    GEBQ01016407    JAT23570.1    GECU01010814    JAS96892.1    GECZ01029829    JAS39940.1    KQ982974    KYQ48588.1    GL888679    EGI58542.1    KQ981993    KYN31114.1    GL452770    EFN76764.1    KK107119    QOIP01000009    EZA58681.1    RLU18408.1    KQ435127    KZC14831.1    GL443520    EFN61956.1    KQ414735    KOC62250.1    GBHO01004329    JAG39275.1    GBHO01004328    GDHC01004159    JAG39276.1    JAQ14470.1    GBRD01012604    JAG53220.1    GBYB01008921    JAG78688.1    CP026253    AWP09520.1    GCES01156123    JAQ30199.1    AERX01012598    AERX01012599    JT409626    AHH38756.1    GCES01147423    GCES01146749    JAQ38899.1    GBYX01473356    JAO08302.1    HADY01020990    HAEJ01002935    SBP59475.1    NEDP02000690    OWF55364.1    JW868521    AFP01039.1    HADX01008495    SBP30727.1    HADZ01022009    HAEA01000250    SBP85950.1    HADW01007433    SBP08833.1    HAED01007134    HAEE01014075    SBQ93319.1    GBYX01473350    JAO08308.1    GBYX01473335    JAO08323.1    GBYX01473340    JAO08318.1    GBYX01473355    JAO08303.1    GBYX01473332    JAO08326.1    HAEH01016467    HAEI01014974    SBS04585.1    HAEF01013633    HAEG01012457    SBR92408.1    HAEB01014808    HAEC01000309    SBQ61335.1    AHAT01009830    AY029484    AAK33012.1    BX571850   

Proteomes

UP000005204    UP000007151    UP000053268    UP000053240    UP000235965    UP000030742    + More
UP000007266    UP000019118    UP000078542    UP000192223    UP000002358    UP000078540    UP000215335    UP000075809    UP000007755    UP000078541    UP000008237    UP000053097    UP000279307    UP000076502    UP000000311    UP000053825    UP000005226    UP000246464    UP000261560    UP000261540    UP000261380    UP000192224    UP000261460    UP000265160    UP000005207    UP000221080    UP000261400    UP000265000    UP000261500    UP000002852    UP000261480    UP000265080    UP000018467    UP000265100    UP000007635    UP000261440    UP000242188    UP000265180    UP000001038    UP000265200    UP000007303    UP000018468    UP000261420    UP000261360    UP000000437    UP000242638   

PRIDE

H9JHC9   

Pfam

PF10408   Ufd2P_core        + More
PF04564   U-box
PF12017   Tnp_P_element
PF00061   Lipocalin

Interpro

IPR003613   Ubox_domain        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR019474   Ub_conjug_fac_E4_core       
IPR021896   Transposase_37       
IPR000463   Fatty_acid-bd       
IPR000566   Lipocln_cytosolic_FA-bd_dom       
IPR012674   Calycin       

SUPFAM

SSF50814   SSF50814       

Gene 3D

3.30.40.10     2.40.128.20    

ProteinModelPortal

H9JHC9   A0A2H1WTC0   A0A2W1BXT7   A0A212F6R7   A0A194Q4C0   A0A194RMU7   + More
A0A2J7Q935   U4UBZ5   D6WWC9   N6TMI5   A0A1Y1KTR1   A0A1B6K0K7   A0A151I7A0   A0A1W4WJE3   A0A1W4WV99   K7J0Z8   A0A151HXX4   A0A232F678   A0A1B6LIT3   A0A1B6JCG4   A0A1B6EPW3   A0A151WL46   F4X4W9   A0A195ETA7   E2C5F1   A0A026WSP6   A0A154PSF2   E2AX73   A0A0L7QUF8   A0A0A9ZBU6   A0A0A9Z5W3   A0A0K8SK88   A0A0C9RP36   H2TTD7   A0A2U9C0N8   A0A3B3CYX4   A0A3B3RKJ9   A0A3B5LDW3   A0A1W5A1E0   A0A146NEM1   A0A3B4FGU2   A0A3P9C7H0   I3J263   W5U9U8   A0A3B5A698   A0A146P4M1   A0A3B3VHU1   A0A3B5R0B0   A0A3B3XHY1   A0A3P8TM89   W5L1A7   A0A3P8R8D8   A0A3B3U4D3   G3NW73   A0A0S7EZN9   A0A3B4CZR9   A0A1A8AZ35   A0A210R349   V9KRM8   A0A1A7YJG2   A0A1A8D464   A0A1A7WSW0   A0A1A8I705   A0A0S7ESY3   A0A0S7F1A9   A0A0S7EZQ0   A0A0S7ETK3   A0A3P9KUE0   A0A3B3HLZ0   A0A3P9IWJ9   A0A0S7ESZ7   H3DCI3   A0A1A8REV0   A0A1A8QGF4   A0A1A8FPM8   W5MIE3   A0A3B4TVC5   A0A3B4WH21   Q8JIX0   F1Q5A9   A0A3P9PN37  

KEGG

101739047    K10597 ubiquitin conjugation factor E4 B [EC:2.3.2.27] | (RefSeq) ubiquitin conjugation factor E4 B

GO

GO:0006511   GO:0000151   GO:0034450   GO:0030433   GO:0005634   GO:0000209   GO:0005737   GO:0004803   GO:0006313   GO:0008289   GO:0016567   GO:0009972   GO:0016787   GO:0016491   GO:0016651   GO:0006334   GO:0003779   GO:0016021  

Length:

631

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11435

Exp number, first 60 AAs:

0.04822

Total prob of N-in:

0.00302

outside

1  -  631

 

 

Pi

170.699502

Theta

154.919582

Tajima's D

0.018353

CLR

34.372671

CSRT

0.372731363431828

Interpretation

Uncertain