Silkworm Genome Informatics Database

Gene

KWMTBOMO01433 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008954

Annotation

putative_zinc_finger_protein_[Danaus_plexippus]

Location

Bomo_Chr3(-):10691950-10700239 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.578

CDS

ATGACAAGATTCACGCGGGCAAAAGGCTCGAAATCATCTAATGAGAAAACACCGGAAGATGGAACTCCTTGGGAAGTAATGAAGGAACAGTTAATGAAATCTAAACAACAAAACGAAGACGCTGAAAAACGAGAACAGGCTGAAAAGAAACGTATTGAGAATTATGAGAATTTTCTTAAGGAACACAAAACTCAAAAACGAACAGCCACATGGTGTGAATTCGAAGAAACCACACAGACTACAACCAAAAAGCAAACAAGTCCTAGTAAAAAAAAGAAAAGGAAACAAAATAGTTCGTATCCTCCTGTTACTGAAGAAAATCTTAGATTAGATGATCAAGAGAAGACAGCTGAACAGAAAAAAAATAAAAAAACGAAGAATAAAAAAAATGAGTCCACAAACAAGCATGCTGTTCAAGTCTCTGAATATGTAAACCACAACGAGTCTGATGTTTCACAAGCAACTGTAATTCCTACACCTAAGAAAAAAAAAGAAAATTTTAAAAACAACCAACAAAAATTGCAGAATGACAATGCAAAACAAAATAATAAACAAAATAATCAAACTGAAAACAACAAAACTGTCAATAGACCAAAGGAAAGAAAAAAGAAAAACTTTATTAATGGACAACCAGTCCGTAGGAAACCAGTAGACGATAGCTTCCAAATAATAATCAATGGTAAAGAAGTTGAGCTGATTCGTTATGATGGTTTTCCTGTTATGAAGAAAGATGCTGAACGTTTACAAGAATTAAAGACCAATATGATCAAGAAGGGAATTCCTAAAAGTGAAGTGCAGAGAACTATGAAATTGGAAAGGAGAAGAGCAGAAAAGGCGTTGGCCCGTGTGAAGCGAGAAGTTTGTTATAATTGTAGGAAAGGTGGCCATAACCTGTCAGATTGCCCAGATTTAAAGTCGGTTATACCGGGAGTTGACGCTGGAGATGGTATTTGTTTCAAATGCGGCTCAACAGAGCATAAACAGTTTGAATGCAAAGTTCAAAGGGACAAGGAATTCAGATTTGCAACATGCTTCATTTGTAAAGAACAGGGACACATTGCTAGACAGTGCCCTGATAATCCAAAAGGCTTATATCCTAATGGTGGTTGCTGTAAGATCTGTGGTGATGTTACTCATATGAAAAAGGATTGCCCTACGATGAATAACCAGAAAGAAGAGACTGCAGTAAAATTACAGACATTGGATACTGCTGATAATGTTGAAGAGATAATGGAAAGACAAAAAAAGCCTGCTGCCGTTGAGACACTTAAGAAACCCAAGAAAATTACATTTTAA

Protein

MTRFTRAKGSKSSNEKTPEDGTPWEVMKEQLMKSKQQNEDAEKREQAEKKRIENYENFLKEHKTQKRTATWCEFEETTQTTTKKQTSPSKKKKRKQNSSYPPVTEENLRLDDQEKTAEQKKNKKTKNKKNESTNKHAVQVSEYVNHNESDVSQATVIPTPKKKKENFKNNQQKLQNDNAKQNNKQNNQTENNKTVNRPKERKKKNFINGQPVRRKPVDDSFQIIINGKEVELIRYDGFPVMKKDAERLQELKTNMIKKGIPKSEVQRTMKLERRRAEKALARVKREVCYNCRKGGHNLSDCPDLKSVIPGVDAGDGICFKCGSTEHKQFECKVQRDKEFRFATCFICKEQGHIARQCPDNPKGLYPNGGCCKICGDVTHMKKDCPTMNNQKEETAVKLQTLDTADNVEEIMERQKKPAAVETLKKPKKITF

Uniprot

H9JHF7

Pubmed

19121390

EMBL

BABH01012492 BABH01012493

Proteomes

UP000005204

PRIDE

H9JHF7

Pfam

PF00098 zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR042246   ZCCHC9

SUPFAM

SSF57756 SSF57756

ProteinModelPortal

H9JHF7

PDB

5A9E E-value=0.0121332, Score=91

KEGG

101739559 K17578 zinc finger CCHC domain-containing protein 9 | (RefSeq) zinc finger CCHC domain-containing pr

GO

GO:0008270 GO:0003676 GO:0008308 GO:0016020 GO:0042773 GO:0016491 GO:0016651 GO:0006334 GO:0003779 GO:0016021

PANTHER

PTHR46242

Length:

431

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02645

outside

1 - 431

Pi

262.987642

Theta

177.439677

Tajima's D

0.432821

CLR

0

CSRT

0.491625418729064

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics