SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01429  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008956
Annotation
PREDICTED:_protein_lin-54_homolog_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.029
 

Sequence

CDS
ATGGAACATAACTTAGATGATTCATTAAACTTAGAAGGAAGCATAGAAAGTATGGATTTTGATAATGCCGGAGTGGTTGTTAGTCAAGATAATATGACTCTCTCTGCAAATGAACACTCAGGTGATCTCTCAATGGATTTTGAAGAACAACAAATTTTAATGGATGCAGGAACGGAAGAAGTCATTGATTTTACAGGTGACCAGTTTTCGCTTCAGGAGTATGCTGTGCAAGATGATCAAACTCCAGAACCTGAAGTGACTATTGAGCTGAACTCCGCATCTTTGAAACCCACTAAAAAGCCAGAAGTGAGCAGCATGCCGCGACAAGTGCCAATAGCGCCGAAGCCCCGCCTGTCGCAGACGACCAAACCGAAGACCACGTTCGGTCCGGGCAAGCAATACGCCATCGCGCCGAAACCTGTTACGTTTGTGATGAATAAAAATACAAAAAAAGTCTCAGTAGCCGGTGTACAAGCAAACTCAAAAGGCAATGCTGTACTAGCTCAAATTGGTAAGCAGTTAGTTATGGTACCAGCTGAAGGAGCACAGAAAATTAAGCTGGTGTCTGCCGGATCAGGTGCCACTCTCCAATATGTACGAGCTAATTCTGATCAGGCACAGTTAACACCAGCAAAGGCCGCCGGAACAACTCAAGCTAAGCCTTTAGTGGCTAAGGTCGTAGTGCAAGCGGGTCACTCAAACACGGATACAAGTAATCAGCCGGCAGTACTAACAAAGTTGTTGCCGTCAAGTAACGCGGGCGCCCGGTACGTGATGCAACAGAAAACCGTCCCTATATCTATTGGAAATAAGGTTTTGCTGTCCTCTCCCACTAAGCAAGGAGTTAAGAAGCAGCAAATTATTGCCGTGAAGTCGTCTCCACAAAAAGGTTCAACGAAAAAAGTTTTCATATCGGCAAATCCTAACCAGAATGTGATCCTAAAGACCACAGCGCCATCAAAGACTGGACAAATTACAAAAGATGGTAATGTCATTCTGCAAGGAGGGCAGCGGACGCAACTGCATCAAATCAACGTACCGGGTAAAGGCATACAATATATTCGACTGGTCACGAACTCGACGCCGGCCGCCTCCAAGTCTTCCTCCTCGGTGACGCTTCCAGCCAAGTCATTCGTCTTAACCGACGCTAAAGGTACAGTCCTTCAGATGAGCTCAGAAAAAATGCTTAGTACTCAACCACCACCTTTGATCATCACAGGGAATTTACAAAATTCGTCTAAAGTGACCGTGAAACCCGATCGCAAGCTGGTGAGGATAGCTCCGCTCACCAGCAAGAGTGGAGCCGCCGCGACGTTTACATAA
Protein
MEHNLDDSLNLEGSIESMDFDNAGVVVSQDNMTLSANEHSGDLSMDFEEQQILMDAGTEEVIDFTGDQFSLQEYAVQDDQTPEPEVTIELNSASLKPTKKPEVSSMPRQVPIAPKPRLSQTTKPKTTFGPGKQYAIAPKPVTFVMNKNTKKVSVAGVQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAGSGATLQYVRANSDQAQLTPAKAAGTTQAKPLVAKVVVQAGHSNTDTSNQPAVLTKLLPSSNAGARYVMQQKTVPISIGNKVLLSSPTKQGVKKQQIIAVKSSPQKGSTKKVFISANPNQNVILKTTAPSKTGQITKDGNVILQGGQRTQLHQINVPGKGIQYIRLVTNSTPAASKSSSSVTLPAKSFVLTDAKGTVLQMSSEKMLSTQPPPLIITGNLQNSSKVTVKPDRKLVRIAPLTSKSGAAATFT

Summary

Pfam
PF03638   TCR        + More
PF00856   SET
Interpro
IPR028307   Lin-54_fam        + More
IPR005172   CRC       
IPR033467   Tesmin/TSO1-like_CXC       
IPR001214   SET_dom       

Ontologies

GO

Topology

Length:
440
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0002
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00309
outside
1  -  440
 
 

Population Genetic Test Statistics

Pi
248.987693
Theta
165.728568
Tajima's D
1.193898
CLR
1.536988
CSRT
0.711214439278036
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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