SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01424  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008921
Annotation
elongation_factor_1-beta'_[Bombyx_mori]
Full name
Elongation factor 1-beta'       + More
Probable elongation factor 1-beta      
Location in the cell
Cytoplasmic   Reliability : 1.674 Nuclear   Reliability : 1.218
 

Sequence

CDS
ATGGCTGTAGGAGACGTTAAAACCGCCCAGGGTCTCAATGACTTGAACCAATATTTAGCTGAGAAAAGCTACGTGTCTGGATACACTCCTTCTCAAGCTGATGTTCAAGTATTTGAGCAAGTTGGCAAGGCGCCGGCCGCTAACCTTCCCCACGTACTACGATGGTATAATCAAATTGCTTCATACACTCCGGCTGAACGCAAAACTTGGTCTCAGGGCACCAGCCCATTGACCGCCGGTGCTAAACCCACGGCTCCCGCCCCAGCAGCGAAAGACGACGATGACGACGACGTTGATCTATTTGGTTCTGGTGACGAGGAAGAGGATGCAGAAGCTGAACGAATTCGAGAAGAACGTTTGAAAGCATATGCTGACAAGAAGTCTAAGAAACCAGCCCTCATTGCCAAGTCCTCTATTCTCCTTGATGTCAAGCCATGGGATGATGAAACCGATATGAAGGAAATGGAAAACCAAGTACGCACTATTGAAATGGAAGGCCTTCTCTGGGGAGCCTCCAAACTTGTGCCTGTTGGGTATGGCATAAATAAACTGCAAATTATGTGTGTCATCGAGGACGACAAAGTTTCTGTTGATTTGCTGACAGAAAAAATTCAAGAATTTGAAGATTTTGTACAATCTGTTGACATTGCTGCATTTAACAAAATCTAA
Protein
MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWSQGTSPLTAGAKPTAPAPAAKDDDDDDVDLFGSGDEEEDAEAERIREERLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI

Summary

Subunit
EF-1 is composed of 4 subunits: alpha, beta, beta' and gamma.
Similarity
Belongs to the EF-1-beta/EF-1-delta family.
Keywords
Complete proteome   Direct protein sequencing   Elongation factor   Phosphoprotein   Protein biosynthesis   Reference proteome  
Feature
chain  Elongation factor 1-beta'
EMBL
BABH01012501    D13339    MG992376    AXY94814.1    GDQN01005127    JAT85927.1    + More
AGBW02014011    OWR42400.1    EU258621    ABX54737.1    ODYU01008542    SOQ52236.1    AK401238    KQ459562    BAM17860.1    KPI99866.1    KQ459989    KPJ18667.1    GAIX01005979    JAA86581.1    AK402542    BAM19164.1    KZ149902    PZC78455.1    NWSH01000489    PCG76047.1    AB180443    BAD26687.1    JTDY01005901    KOB66497.1    GDHF01000658    JAI51656.1    CM000071    EDY68998.1    CH479181    EDW32303.1    AXCM01005554    ATLV01023900    KE525347    KFB49845.1    AAAB01008933    EAA09861.2    EAL40368.1    APGK01041559    BT128515    KB740994    KB632356    AEE63472.1    ENN75971.1    ERL93424.1    APCN01005544    UFQS01002338    UFQT01000934    UFQT01002338    SSX13812.1    SSX28072.1    AJVK01013921    AXCN02001045    ADMH02001513    ETN62241.1    GEZM01086950    JAV58947.1    GGFM01000318    MBW21069.1    GGFK01000512    MBW33833.1    GGFJ01009195    MBW58336.1    GGFJ01009198    MBW58339.1    GAMC01001792    JAC04764.1    JXUM01152006    KQ571350    KXJ68189.1    GGFM01000322    MBW21073.1    GL442815    EFN63002.1    GAKP01002133    JAC56819.1    GBYB01003255    JAG73022.1    CVRI01000035    CRK92747.1    KA647433    AFP62062.1    GGFJ01009197    MBW58338.1    GFDG01000712    JAV18087.1    GL445250    EFN89917.1    KQ971357    EFA08270.1    GFDF01008387    JAV05697.1    JRES01000195    KNC33418.1    AJWK01024029    FX985557    BBF97891.1    GAPW01004051    JAC09547.1    GBXI01015094    JAC99197.1    GDAI01001263    JAI16340.1    KQ978411    KYM94113.1    KQ981920    KYN32979.1    CH477204    EAT47997.1    AY552052    AAS79338.1    GANO01000918    JAB58953.1    GFDL01015893    JAV19152.1    KQ983247    KYQ46172.1    KQ978858    KYN27919.1    CH902619    EDV37433.1    CH963849    EDW74626.1    CH916375    EDV98488.1    DS235088    EEB11659.1    CH940648    EDW60187.1    CH933808    EDW10553.1    AE013599    AHN56302.1    AL031863    AF172636    CH954179    EDV55697.1    CH480816    EDW48205.1    CM000362    CM002911    EDX07416.1    KMY94384.1    GEDC01014610    JAS22688.1    EZ000417    ACJ64291.1    DQ673433    ABG82006.1    DS231915    EDS26057.1    OUUW01000001    SPP74835.1    CM000158    EDW91862.1    CP012524    ALC42099.1    CCAG010004445    EZ423046    ADD19322.1    KC571938    AGM32437.1    KQ434831    KZC07822.1    NEVH01011897    PNF31174.1    AAZX01010915   
Pfam
PF10587   EF-1_beta_acid        + More
PF00736   EF1_GNE
PF14497   GST_C_3
Interpro
IPR036219   eEF-1beta-like_sf        + More
IPR018940   EF-1_beta_acid_region_euk       
IPR036282   Glutathione-S-Trfase_C_sf       
IPR014038   EF1B_bsu/dsu_GNE       
IPR014717   Transl_elong_EF1B/ribosomal_S6       
IPR001326   Transl_elong_EF1B_B/D_CS       
IPR004046   GST_C       
SUPFAM
SSF54984   SSF54984        + More
SSF47616   SSF47616       
Gene 3D
PDB
2N51     E-value=1.84124e-39,     Score=405

Ontologies

Topology

Length:
222
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01747
Exp number, first 60 AAs:
0
Total prob of N-in:
0.15569
outside
1  -  222
 
 

Population Genetic Test Statistics

Pi
164.817597
Theta
155.692519
Tajima's D
0.163909
CLR
0
CSRT
0.410829458527074
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26822097 IVPVGYGINK 100.00 3e-08
26280517 MSGTVIMEWVDPAPFPVTHFGVR 100.00 3e-08
25044914 SYVASVGIATPIAVIPAIESR 100.00 3e-08
27102218 APAANIPHVIR 100.00 3e-08
28467696 SYTNCIIQGYGVIPGPPSK 100.00 3e-08
28556443 SSILLDVKPWDDETDMK 100.00 3e-08
28556443 SSILLDVKPWDDETDMK 100.00 3e-08
26280517 IFTEDTFQNK 100.00 2e-06
25044914 IQEFEDFVQSVDIAAFNK 100.00 2e-06
27102218 AVGDVK 100.00 2e-06
28467696 IQEFEDFVQSVDIAAFNK 100.00 2e-06
26822097 TWSQGTSPITAGAKPTAPAPAAK 100.00 9e-06
26280517 IPEENIGNSR 100.00 9e-06
25044914 IQEEINMIVDK 100.00 9e-06
28467696 IQEESDIR 100.00 9e-06
28556443 APAANLPHVLR 100.00 2e-05
28556443 VVMVYYEGR 100.00 2e-05
28556443 TAQGLNDLNQYLAEK 100.00 6e-04
28556443 TAQGLNDLNQYLAEK 100.00 6e-04
28556443 TAQGLNDLNQYLAEK 100.00 6e-04
28556443 SYVSGYTPSQADVQVFEQVGK 100.00 6e-04
28556443 SYVSGYTPSQADVQVFEQVGK 100.00 6e-04
26822097 IIVATSVAAR 100.00 0.002
26280517 VPPPINQFTQTIDK 100.00 0.002
25044914 WYNDDTYIIVMNVGK 100.00 0.002
24402669 WYAAPWSECTK 100.00 0.002
27102218 SYVSGYTPSQADVQVFEQVGKAPAANIPHVIR 100.00 0.002
28467696 WYNNFTGDDQYR 100.00 0.002
28556443 VSVDLLTEK 100.00 0.002
28556443 TWSQGTSPLTAGAKPTAPAPAAK 100.00 0.002
28556443 TIEMEGLLWGASK 100.00 0.012
28556443 TIEMEGLLWGASK 100.00 0.012
28556443 TAQGLNDLNQYLAEK 100.00 0.012
28556443 TAQGLNDLNQYLAEK 100.00 0.012
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