Gene

KWMTBOMO01424  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008921

Annotation

elongation_factor_1-beta'_[Bombyx_mori]

Location

Bomo_Chr3(+):10617710-10618846      View in EpiBrowser

Full name

Elongation factor 1-beta'       + More
Probable elongation factor 1-beta      

Location in the cell

Cytoplasmic   Reliability : 1.674 Nuclear   Reliability : 1.218

CDS

ATGGCTGTAGGAGACGTTAAAACCGCCCAGGGTCTCAATGACTTGAACCAATATTTAGCTGAGAAAAGCTACGTGTCTGGATACACTCCTTCTCAAGCTGATGTTCAAGTATTTGAGCAAGTTGGCAAGGCGCCGGCCGCTAACCTTCCCCACGTACTACGATGGTATAATCAAATTGCTTCATACACTCCGGCTGAACGCAAAACTTGGTCTCAGGGCACCAGCCCATTGACCGCCGGTGCTAAACCCACGGCTCCCGCCCCAGCAGCGAAAGACGACGATGACGACGACGTTGATCTATTTGGTTCTGGTGACGAGGAAGAGGATGCAGAAGCTGAACGAATTCGAGAAGAACGTTTGAAAGCATATGCTGACAAGAAGTCTAAGAAACCAGCCCTCATTGCCAAGTCCTCTATTCTCCTTGATGTCAAGCCATGGGATGATGAAACCGATATGAAGGAAATGGAAAACCAAGTACGCACTATTGAAATGGAAGGCCTTCTCTGGGGAGCCTCCAAACTTGTGCCTGTTGGGTATGGCATAAATAAACTGCAAATTATGTGTGTCATCGAGGACGACAAAGTTTCTGTTGATTTGCTGACAGAAAAAATTCAAGAATTTGAAGATTTTGTACAATCTGTTGACATTGCTGCATTTAACAAAATCTAA

Protein

MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWSQGTSPLTAGAKPTAPAPAAKDDDDDDVDLFGSGDEEEDAEAERIREERLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI

Subunit

EF-1 is composed of 4 subunits: alpha, beta, beta' and gamma.

Similarity

Belongs to the EF-1-beta/EF-1-delta family.

Keywords

Complete proteome   Direct protein sequencing   Elongation factor   Phosphoprotein   Protein biosynthesis   Reference proteome  

Feature

chain  Elongation factor 1-beta'

Uniprot

H9JHC4   P29522   A0A3G1T1F4   A0A1E1WG82   A0A212ELM7   A9LSA6   + More
A0A2H1WH12   I4DIX0   A0A194RMB2   S4P4G0   I4DMM4   A0A2W1BXS7   A0A2A4JVI3   Q6F447   A0A0L7KT97   A0A1W4XI75   A0A0K8WKI4   A0A182ILH0   B5E0J9   B4GBP5   A0A182R7U7   A0A182MEA4   A0A084WI01   A0A182K980   A0A182MYH1   A0A182YA69   A0A182UMM8   A0A182XPC9   A0A182LQ56   Q7Q8Q6   A0A182TRV4   J3JZ34   A0A182HFN1   A0A336LJE6   A0A182FV31   A0A1B0DC66   A0A182QSD0   A0A182P8D8   W5JDS4   A0A182W2G9   A0A1Y1KJK1   A0A2M3YXS4   A0A2M3ZZ64   A0A2M4BZ37   A0A2M4BZ45   W8C5F3   A0A182G8G0   A0A2M3YXT1   E2AUE5   A0A034WQB6   A0A0C9R5P7   A0A1J1HXP5   T1PHR9   A0A2M4C023   A0A1L8EHA3   E2B2U8   D6WVN7   A0A1I8Q528   A0A1L8DH37   A0A0L0CM49   A0A1B0CQT5   A0A348G618   A0A023EK92   A0A0A1WLB0   A0A0K8TR05   A0A151I7M0   A0A195EYL6   Q17MM5   Q6Q9G8   U5EMQ4   A0A1Q3EV24   A0A151WEG9   A0A151JN87   B3MDA0   B4MR87   B4JVM0   A0A1W4VD79   E0VE53   B4LP78   B4KSQ4   A0A0B4LFL3   O96827   B3NP58   B4HTA4   B4QIG9   A0A1B6DAI1   B8RIZ3   Q0PXV3   B0WF81   A0A3B0J1L6   B4P5U6   A0A0M3QVA9   A0A1A9ZPA1   D3TNP4   R4V1D1   A0A154P7H9   A0A1A9VX73   A0A2J7QRF8   K7JBG5   A0A1A9Y143  

Pubmed

19121390    1480492    22118469    22651552    26354079    23622113    + More
28756777    26227816    15632085    17994087    24438588    25244985    20966253    12364791    14747013    17210077    22516182    23537049    20920257    23761445    28004739    24495485    26483478    20798317    25348373    25315136    18362917    19820115    26108605    24945155    25830018    26369729    17510324    20566863    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    10731137    10731138    18327897    22936249    17550304    20353571    20075255   

EMBL

BABH01012501    D13339    MG992376    AXY94814.1    GDQN01005127    JAT85927.1    + More
AGBW02014011    OWR42400.1    EU258621    ABX54737.1    ODYU01008542    SOQ52236.1    AK401238    KQ459562    BAM17860.1    KPI99866.1    KQ459989    KPJ18667.1    GAIX01005979    JAA86581.1    AK402542    BAM19164.1    KZ149902    PZC78455.1    NWSH01000489    PCG76047.1    AB180443    BAD26687.1    JTDY01005901    KOB66497.1    GDHF01000658    JAI51656.1    CM000071    EDY68998.1    CH479181    EDW32303.1    AXCM01005554    ATLV01023900    KE525347    KFB49845.1    AAAB01008933    EAA09861.2    EAL40368.1    APGK01041559    BT128515    KB740994    KB632356    AEE63472.1    ENN75971.1    ERL93424.1    APCN01005544    UFQS01002338    UFQT01000934    UFQT01002338    SSX13812.1    SSX28072.1    AJVK01013921    AXCN02001045    ADMH02001513    ETN62241.1    GEZM01086950    JAV58947.1    GGFM01000318    MBW21069.1    GGFK01000512    MBW33833.1    GGFJ01009195    MBW58336.1    GGFJ01009198    MBW58339.1    GAMC01001792    JAC04764.1    JXUM01152006    KQ571350    KXJ68189.1    GGFM01000322    MBW21073.1    GL442815    EFN63002.1    GAKP01002133    JAC56819.1    GBYB01003255    JAG73022.1    CVRI01000035    CRK92747.1    KA647433    AFP62062.1    GGFJ01009197    MBW58338.1    GFDG01000712    JAV18087.1    GL445250    EFN89917.1    KQ971357    EFA08270.1    GFDF01008387    JAV05697.1    JRES01000195    KNC33418.1    AJWK01024029    FX985557    BBF97891.1    GAPW01004051    JAC09547.1    GBXI01015094    JAC99197.1    GDAI01001263    JAI16340.1    KQ978411    KYM94113.1    KQ981920    KYN32979.1    CH477204    EAT47997.1    AY552052    AAS79338.1    GANO01000918    JAB58953.1    GFDL01015893    JAV19152.1    KQ983247    KYQ46172.1    KQ978858    KYN27919.1    CH902619    EDV37433.1    CH963849    EDW74626.1    CH916375    EDV98488.1    DS235088    EEB11659.1    CH940648    EDW60187.1    CH933808    EDW10553.1    AE013599    AHN56302.1    AL031863    AF172636    CH954179    EDV55697.1    CH480816    EDW48205.1    CM000362    CM002911    EDX07416.1    KMY94384.1    GEDC01014610    JAS22688.1    EZ000417    ACJ64291.1    DQ673433    ABG82006.1    DS231915    EDS26057.1    OUUW01000001    SPP74835.1    CM000158    EDW91862.1    CP012524    ALC42099.1    CCAG010004445    EZ423046    ADD19322.1    KC571938    AGM32437.1    KQ434831    KZC07822.1    NEVH01011897    PNF31174.1    AAZX01010915   

Proteomes

UP000005204    UP000007151    UP000053268    UP000053240    UP000218220    UP000037510    + More
UP000192223    UP000075880    UP000001819    UP000008744    UP000075900    UP000075883    UP000030765    UP000075881    UP000075884    UP000076408    UP000075903    UP000076407    UP000075882    UP000007062    UP000075902    UP000019118    UP000030742    UP000075840    UP000069272    UP000092462    UP000075886    UP000075885    UP000000673    UP000075920    UP000069940    UP000249989    UP000000311    UP000183832    UP000095301    UP000008237    UP000007266    UP000095300    UP000037069    UP000092461    UP000078542    UP000078541    UP000008820    UP000075809    UP000078492    UP000007801    UP000007798    UP000001070    UP000192221    UP000009046    UP000008792    UP000009192    UP000000803    UP000008711    UP000001292    UP000000304    UP000079169    UP000002320    UP000268350    UP000002282    UP000092553    UP000092445    UP000092444    UP000076502    UP000078200    UP000235965    UP000002358    UP000092443   

PRIDE

H9JHC4    P29522    O96827   

Pfam

PF10587   EF-1_beta_acid        + More
PF00736   EF1_GNE
PF14497   GST_C_3

Interpro

IPR036219   eEF-1beta-like_sf        + More
IPR018940   EF-1_beta_acid_region_euk       
IPR036282   Glutathione-S-Trfase_C_sf       
IPR014038   EF1B_bsu/dsu_GNE       
IPR014717   Transl_elong_EF1B/ribosomal_S6       
IPR001326   Transl_elong_EF1B_B/D_CS       
IPR004046   GST_C       

SUPFAM

SSF54984   SSF54984        + More
SSF47616   SSF47616       

Gene 3D

3.30.70.60    

CDD

cd00292  EF1B

ProteinModelPortal

H9JHC4   P29522   A0A3G1T1F4   A0A1E1WG82   A0A212ELM7   A9LSA6   + More
A0A2H1WH12   I4DIX0   A0A194RMB2   S4P4G0   I4DMM4   A0A2W1BXS7   A0A2A4JVI3   Q6F447   A0A0L7KT97   A0A1W4XI75   A0A0K8WKI4   A0A182ILH0   B5E0J9   B4GBP5   A0A182R7U7   A0A182MEA4   A0A084WI01   A0A182K980   A0A182MYH1   A0A182YA69   A0A182UMM8   A0A182XPC9   A0A182LQ56   Q7Q8Q6   A0A182TRV4   J3JZ34   A0A182HFN1   A0A336LJE6   A0A182FV31   A0A1B0DC66   A0A182QSD0   A0A182P8D8   W5JDS4   A0A182W2G9   A0A1Y1KJK1   A0A2M3YXS4   A0A2M3ZZ64   A0A2M4BZ37   A0A2M4BZ45   W8C5F3   A0A182G8G0   A0A2M3YXT1   E2AUE5   A0A034WQB6   A0A0C9R5P7   A0A1J1HXP5   T1PHR9   A0A2M4C023   A0A1L8EHA3   E2B2U8   D6WVN7   A0A1I8Q528   A0A1L8DH37   A0A0L0CM49   A0A1B0CQT5   A0A348G618   A0A023EK92   A0A0A1WLB0   A0A0K8TR05   A0A151I7M0   A0A195EYL6   Q17MM5   Q6Q9G8   U5EMQ4   A0A1Q3EV24   A0A151WEG9   A0A151JN87   B3MDA0   B4MR87   B4JVM0   A0A1W4VD79   E0VE53   B4LP78   B4KSQ4   A0A0B4LFL3   O96827   B3NP58   B4HTA4   B4QIG9   A0A1B6DAI1   B8RIZ3   Q0PXV3   B0WF81   A0A3B0J1L6   B4P5U6   A0A0M3QVA9   A0A1A9ZPA1   D3TNP4   R4V1D1   A0A154P7H9   A0A1A9VX73   A0A2J7QRF8   K7JBG5   A0A1A9Y143  

PDB

2N51     E-value=1.84124e-39,     Score=405

KEGG

693119    K03232 elongation factor 1-beta | (RefSeq) Ef1beta; elongation factor 1 beta'

GO

GO:0003746   GO:0005853   GO:0006414   GO:0005829   GO:0005085   GO:0016020   GO:0042773   GO:0016491   GO:0016651   GO:0006334   GO:0003779   GO:0016021  

Length:

222

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01747

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15569

outside

1  -  222

 

 

Pi

164.817597

Theta

155.692519

Tajima's D

0.163909

CLR

0

CSRT

0.410829458527074

Interpretation

Uncertain