SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01420  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008959
Annotation
lethal(3)neo18_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 3.275
 

Sequence

CDS
ATGGTGTCTTGGAGTGCTCTCGGTCGATCTTTCGGCATAAATTTGGTAAAAAATTCTTTAAAGTCGCCTAATAAAATACAGAATGTGACTTTCACCACCGCGAAAACCTTAAAAGGCAGTCATGGAGAAAGAACAATGGCACTGCAGCCATCCAGATGGCAATGGCACAAATTTAAGGATATGCTGCACTTTTACATGATGGTTGGACTTATACCGGCCGGTGCCCTTATATTCTACTGTAACGTATTCATTGGGCCGGCGCAATTGACACCTATCCCTGAAGGATATACGCCCAAATACTGGGAGTACCACCGCCATCCAATCACCAGATTTATTGCTCGCTATATTCACAACAATCCACAACAGGATTATGAGAAATTTATGCATTTCCTTGATGAAGAACAACAGAGAATAAAACTGCGTGCATTAGAAAAAGAAATTATCAAAAAAATGGCTGAGCGCCAGGACTACCAAGCCTATTACTATAAACCGATGGTCAACAAATACTTACGTATGAATAAGAGAACCGGTGATGAATTGTATAACCGTATTGGTGATGACTACAAGGATTAA
Protein
MVSWSALGRSFGINLVKNSLKSPNKIQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYCNVFIGPAQLTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKYLRMNKRTGDELYNRIGDDYKD

Summary

EMBL
BABH01012512    EU826676    ACF33815.1    NWSH01000489    PCG76054.1    ODYU01011597    + More
SOQ57436.1    KZ149902    PZC78450.1    AGBW02013528    OWR43262.1    KQ459562    KPI99873.1    AK401567    BAM18189.1    KQ459989    KPJ18672.1    GAIX01000031    JAA92529.1    JTDY01005718    KOB66699.1    MG992427    AXY94865.1    KC996763    AGT62473.1    GDAI01000188    JAI17415.1    APCN01000188    AAAB01008807    EAA03934.4    GFDL01006865    JAV28180.1    CH477553    EAT39093.1    ATLV01015294    KE525006    KFB40303.1    AXCM01006462    GEDC01005454    JAS31844.1    CVRI01000018    CRK90345.1    GAPW01004776    JAC08822.1    JXUM01137329    KQ568562    KXJ68957.1    KK853123    KDR11090.1    AXCN02000551    GAKP01000886    JAC58066.1    GDHF01032876    JAI19438.1    DS231833    EDS32230.1    GECL01003289    JAP02835.1    CAQQ02374563    CH963847    EDW73445.1    GFDG01001599    JAV17200.1    GANO01003833    JAB56038.1    CH902618    EDV38835.1    GBXI01013747    JAD00545.1    AJVK01023881    CM000363    CM002912    EDX10191.1    KMY99168.1    KA645734    AFP60363.1    AE014296    AY070637    AY070682    AAF49954.1    AAL48108.1    AAL48153.1    AGB94435.1    CH480815    EDW41222.1    GGFJ01009685    MBW58826.1    GGFM01002939    MBW23690.1    GGFM01002994    MBW23745.1    GAMD01003004    JAA98586.1    EF639026    ABR27911.1    GGFK01005238    MBW38559.1    GBHO01004855    GBRD01012213    JAG38749.1    JAG53611.1    EZ423154    ADD19430.1    ADMH02000578    ETN65796.1    JXJN01006061    CM000159    EDW94261.1    GBBI01000084    JAC18628.1    CH940647    EDW69077.1    PYGN01001862    PSN32458.1    CCAG010015091    CH379069    EAL30854.1    CH479188    EDW40246.1    FJ821035    ACN94771.1    CH954178    EDV51526.1    GAMC01001337    JAC05219.1    GGFM01002688    MBW23439.1    OUUW01000002    SPP76266.1    CP012525    ALC43455.1    CH916366    EDV96255.1    NEVH01010480    PNF32366.1    AY231952    AAR09975.1    AJVK01026771    AK417609    BAN20824.1    CH933809    EDW17844.1    GECZ01005337    JAS64432.1    GEBQ01006341    GEBQ01002299    JAT33636.1    JAT37678.1    GECU01005383    JAT02324.1    APGK01053959    KB741239    ENN72168.1    AJWK01023566    KQ971382    EEZ97690.1    GFDF01002116    JAV11968.1    GDRN01092986    JAI59995.1    GFDF01002115    JAV11969.1    SPP76265.1    GFDF01001924    JAV12160.1   
Pfam
PF09781   NDUF_B5
Interpro
IPR019173   NADH_UbQ_OxRdtase_B5_su        + More
IPR038052   Chaperonin_RbcX_sf       
SUPFAM
SSF158615   SSF158615       
PDB
5GUP     E-value=3.99982e-24,     Score=272

Ontologies

Topology

Length:
190
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.31917
Exp number, first 60 AAs:
0.00771
Total prob of N-in:
0.45126
outside
1  -  60
TMhelix
61  -  83
inside
84  -  190
 
 

Population Genetic Test Statistics

Pi
224.152548
Theta
151.724435
Tajima's D
1.288965
CLR
0.077114
CSRT
0.736513174341283
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 FMHFIDEEQQR 100.00 0.002
28467696 QDVPNWITSTAADGR 100.00 0.002
26280517 YIFITSK 100.00 0.017
28467696 YIHGDEPGWVDYTIWPFIER 100.00 0.017
28556443 FMHFLDEEQQR 100.00 0.017
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