Silkworm Genome Informatics Database

Gene

KWMTBOMO01416

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_17.6_[Operophtera_brumata]

Location

Bomo_Chr3(+):10356491-10357665 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.02

CDS

ATGCCGCCGCGAAAAATACGCCAACAGACGGATGACAATAGTGATTCTGGTGATGAAAAGGTGGACGCAGTGCCCTCGCCAGCACCAGTGCTCATGTCCGGGGATCAGCTGTCCTCGCTCCTGGCCGCCTTCTCAAAGTCGCAGGCCGAGGCGAACCGACAACTCGTCGAGTCCCTGTGGGCATCGCATGGTTTGGGAAGTGGATCGAAGTTCACCACCCCGATAGTGTCACCGTCCCCGACGCCAACAAGTAACATGGCTAAATGCACCGCGCGTTTTGATGGCGTCGCTCGCGATCCGGAGGCCGTTGAAGCGTTTATCGACTCTGTGGAGGTGTACAAGGAGTGTGCGTGCGTCTCCGACGATATCGCATTGCGTGGACTACCAATGCTCATGGAAGGCGAAGCAGCCATATGGTGGAGAGGGGTCCGGAACGAAGTGTCCTCGTGGCCCGACGCTCTCAAAAGGCTACGAGCTATGTATGGCGTGCCACGCCCTGCACATAAAGTTTTTCGTGACGTGTTTTCGTCTGAGCAAGGTGATGAGCTTGCTGACAGTTCCATAGTGAGGATACGTGCTATGCTGTCCAGATTGCCGTACCAGCTACCAGAGGAAGCCAGGTTAGACATAATCTACGATCTACTTCATAAACGGATAAGGAAAAGACTACCGAGAGATGGTGTGAGCGACATAGAAACACTCATAGAGAAGTCGCGCATGGTGGAGGAGTCACTTGTGGAGTGCACGGCTGCCCTCAACATTCCGCCGCAGCCACACAAGTCGTTACCTACGGTGCTCGGCGAACGCAGCTCCGCGCCTGACGTGACAAGTGTGAGATCGCCGAGACCTGCCGGCGCTGCCGCTGCGCTAGTGCGCGCCTCTGTTGCTGTTGCACCGTCGTCGCTACCTCAACCGTCCCCATCCCCGCGTAGTGTGAAAAGCGAAACATTGGTTAAAAAGCTATTTTGTGTGTATTGCAAATCGCGTGGACATGTCCGTGATATAATGGGACTGCTTTGTTAG

Protein

MPPRKIRQQTDDNSDSGDEKVDAVPSPAPVLMSGDQLSSLLAAFSKSQAEANRQLVESLWASHGLGSGSKFTTPIVSPSPTPTSNMAKCTARFDGVARDPEAVEAFIDSVEVYKECACVSDDIALRGLPMLMEGEAAIWWRGVRNEVSSWPDALKRLRAMYGVPRPAHKVFRDVFSSEQGDELADSSIVRIRAMLSRLPYQLPEEARLDIIYDLLHKRIRKRLPRDGVSDIETLIEKSRMVEESLVECTAALNIPPQPHKSLPTVLGERSSAPDVTSVRSPRPAGAAAALVRASVAVAPSSLPQPSPSPRSVKSETLVKKLFCVYCKSRGHVRDIMGLLC

Uniprot

A0A2A4ITZ4 A0A2A4JSD7 A0A0L7KWD2 A0A2A4K8X8 A0A0L7KSA4 A0A2A4IXZ6 + More
A0A0L7K460 A0A2A4J1V9 A0A0L7L9J0 A0A2A4JQ27 A0A0L7KNY7 A0A2A4IUX1 A0A0L7L2Z3 A0A2A4JQE7 A0A2A4J5Q0 A0A194QZY2 A0A2A4J3G0

Pubmed

26227816 26354079

EMBL

NWSH01006416 PCG63447.1 NWSH01000724 PCG74608.1 JTDY01004939 KOB67577.1 + More
NWSH01000039 PCG80378.1 JTDY01006541 KOB65909.1 NWSH01004894 PCG64601.1 JTDY01010931 KOB57873.1 NWSH01004191 PCG65373.1 JTDY01002191 KOB71911.1 NWSH01000798 PCG74147.1 JTDY01007689 KOB65012.1 NWSH01006241 PCG63565.1 JTDY01003352 KOB69686.1 NWSH01000779 PCG74285.1 NWSH01003218 PCG66743.1 KQ460947 KPJ10535.1 NWSH01003681 PCG65942.1

Proteomes

UP000218220 UP000037510 UP000053240

Pfam

PF00077   RVP        + More
PF00665   rve
PF17921   Integrase_H2C2

Interpro

IPR001878   Znf_CCHC        + More
IPR001969   Aspartic_peptidase_AS
IPR018061   Retropepsins
IPR021109   Peptidase_aspartic_dom_sf
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR001584   Integrase_cat-core
IPR012337   RNaseH-like_sf
IPR036875   Znf_CCHC_sf

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A2A4ITZ4 A0A2A4JSD7 A0A0L7KWD2 A0A2A4K8X8 A0A0L7KSA4 A0A2A4IXZ6 + More
A0A0L7K460 A0A2A4J1V9 A0A0L7L9J0 A0A2A4JQ27 A0A0L7KNY7 A0A2A4IUX1 A0A0L7L2Z3 A0A2A4JQE7 A0A2A4J5Q0 A0A194QZY2 A0A2A4J3G0

KEGG

NA

GO

GO:0008270 GO:0004190 GO:0003676 GO:0015074

Length:

340

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00287

Exp number, first 60 AAs:

0.00046

Total prob of N-in:

0.06005

outside

1 - 340

Pi

577.9908

Theta

242.532797

Tajima's D

4.344859

CLR

0.242639

CSRT

0.999650017499125

Interpretation

Possibly Balancing Selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree