SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01415
Annotation
endonuclease-reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 2.962
 

Sequence

CDS
ATGGAAGAAGTTTTAAACACGCTAATTTCAATAAAAAAAGAACTGGAAGAACAAAGAATTGAAATTAGAGAAACTGGAAAAAATGTTACGGAAAAAGTTACACAAAATATTACTAGTATATTCGAGGAGAAATTTTTGGTCTGGGAAGGAAAACTTGGAGAAATGAAAGAAAAAGTGGAAAATCAAGAAAAAAGAATTCATTACCTGGAAAAACAAACAAGAGTAAGAAACTTAGTATTTTTCGGTATCGAGGAAAACGAAACATCATACAAGAGTTTCGAAGAAAATATAATTAAATGGATTGAGCAATATTTCTCTATCAAACTAACCTACAGCGACATTCAAGAGATAAAAAGACTGGGAAAGAAACAAGAGAGACCACGTCCAACTGTTGTAACTTTCACTACACTAGGAATAAAAATCGAAATATTTAAACAAAAAAGAGCGCTGAAAGATACACAGTACTATATGAAAGAAGACTTCCCCAAATATGTACTTGAAAAAAGAAAGGCACTACAGGAACAACTGAAATTAGAGAGGGAAAAGGGAAATACAGCTATACTCAAATATGATAAACTAATTGTATCAAAATACCAAAGTAAAAGAAAATACCGGTCATCTCCAGACAATACCCCACAAATCAATATAGACAAGTATACTCAGGCTAGTAAAAAAAACAAGACAAAGCAGATTGGCAAGACAGTCACTAGGTCAAATAGTATCACAGAAGGAGTCATAAAACCTAGCATGCTCAACTTCTTAGTTAACAAAAATACAATCAAAACTAACAACAACCAAGAAAGTAACAGCGAGAATATATAG
Protein
MEEVLNTLISIKKELEEQRIEIRETGKNVTEKVTQNITSIFEEKFLVWEGKLGEMKEKVENQEKRIHYLEKQTRVRNLVFFGIEENETSYKSFEENIIKWIEQYFSIKLTYSDIQEIKRLGKKQERPRPTVVTFTTLGIKIEIFKQKRALKDTQYYMKEDFPKYVLEKRKALQEQLKLEREKGNTAILKYDKLIVSKYQSKRKYRSSPDNTPQINIDKYTQASKKNKTKQIGKTVTRSNSITEGVIKPSMLNFLVNKNTIKTNNNQESNSENI

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
Interpro
IPR004244   Transposase_22        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR027124   Swc5/CFDP2       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR036322   WD40_repeat_dom_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF50978   SSF50978       
Gene 3D

Ontologies

Topology

Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00393
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01418
outside
1  -  273
 
 

Population Genetic Test Statistics

Pi
237.81782
Theta
186.858496
Tajima's D
0.761405
CLR
0
CSRT
0.589120543972801
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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