Gene

KWMTBOMO01415

Annotation

endonuclease-reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr3(-):10290263-10291180      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.962

CDS

ATGGAAGAAGTTTTAAACACGCTAATTTCAATAAAAAAAGAACTGGAAGAACAAAGAATTGAAATTAGAGAAACTGGAAAAAATGTTACGGAAAAAGTTACACAAAATATTACTAGTATATTCGAGGAGAAATTTTTGGTCTGGGAAGGAAAACTTGGAGAAATGAAAGAAAAAGTGGAAAATCAAGAAAAAAGAATTCATTACCTGGAAAAACAAACAAGAGTAAGAAACTTAGTATTTTTCGGTATCGAGGAAAACGAAACATCATACAAGAGTTTCGAAGAAAATATAATTAAATGGATTGAGCAATATTTCTCTATCAAACTAACCTACAGCGACATTCAAGAGATAAAAAGACTGGGAAAGAAACAAGAGAGACCACGTCCAACTGTTGTAACTTTCACTACACTAGGAATAAAAATCGAAATATTTAAACAAAAAAGAGCGCTGAAAGATACACAGTACTATATGAAAGAAGACTTCCCCAAATATGTACTTGAAAAAAGAAAGGCACTACAGGAACAACTGAAATTAGAGAGGGAAAAGGGAAATACAGCTATACTCAAATATGATAAACTAATTGTATCAAAATACCAAAGTAAAAGAAAATACCGGTCATCTCCAGACAATACCCCACAAATCAATATAGACAAGTATACTCAGGCTAGTAAAAAAAACAAGACAAAGCAGATTGGCAAGACAGTCACTAGGTCAAATAGTATCACAGAAGGAGTCATAAAACCTAGCATGCTCAACTTCTTAGTTAACAAAAATACAATCAAAACTAACAACAACCAAGAAAGTAACAGCGAGAATATATAG

Protein

MEEVLNTLISIKKELEEQRIEIRETGKNVTEKVTQNITSIFEEKFLVWEGKLGEMKEKVENQEKRIHYLEKQTRVRNLVFFGIEENETSYKSFEENIIKWIEQYFSIKLTYSDIQEIKRLGKKQERPRPTVVTFTTLGIKIEIFKQKRALKDTQYYMKEDFPKYVLEKRKALQEQLKLEREKGNTAILKYDKLIVSKYQSKRKYRSSPDNTPQINIDKYTQASKKNKTKQIGKTVTRSNSITEGVIKPSMLNFLVNKNTIKTNNNQESNSENI

Uniprot

A0A0L7KL25   A0A2A4KAH5   A0A0L7KMI6   A0A194RRA2   D7F178   A0A2H1WF27   + More
A0A0L7L607   A0A0L7LLD6   A0A0L7LJT1   A0A0L7KFW9   A0A2H1WS99   A0A0L7LIY0   A0A2A4JB54   A0A0L7LL17   A0A0L7LUV7   A0A0L7KKY9   A0A0L7KQ23   A0A0L7LDK8   A0A2A4JED5   A0A2A4J1F3   A0A2W1BGL1   A0A2A4J3C0   A0A2A4IX08   A0A0L7LNS8   A0A0L7KX87   D7F179   A0A0L7L7G4   A0A2H1V457   A0A2H1V475   A0A1Y1KNT7   A0A1S3DLA6   A0A1S4EPY6   A0A3Q0IIJ5  

Pubmed

26227816    26354079    20470440    28756777    28004739   

EMBL

JTDY01009375    KOB63594.1    NWSH01000023    PCG80652.1    JTDY01008567    KOB64512.1    + More
KQ459995    KPJ18566.1    FJ265563    ADI61831.1    ODYU01008249    SOQ51673.1    JTDY01002701    KOB70892.1    JTDY01000640    KOB76373.1    JTDY01000843    KOB75692.1    JTDY01009971    KOB62006.1    ODYU01010663    SOQ55918.1    JTDY01000895    KOB75518.1    NWSH01002039    PCG69337.1    JTDY01000780    JTDY01000104    JTDY01000008    KOB75906.1    KOB78842.1    KOB79479.1    JTDY01000076    KOB79001.1    JTDY01009161    KOB64038.1    JTDY01007191    KOB65392.1    JTDY01001575    KOB73484.1    NWSH01001771    PCG70189.1    NWSH01004020    PCG65566.1    KZ150150    PZC72845.1    NWSH01003397    PCG66369.1    NWSH01005231    PCG64345.1    JTDY01000437    KOB77173.1    JTDY01004672    KOB67888.1    FJ265564    ADI61832.1    JTDY01002536    KOB71226.1    ODYU01000585    SOQ35630.1    ODYU01000586    SOQ35631.1    GEZM01082533    JAV61335.1   

Proteomes

UP000037510    UP000218220    UP000053240    UP000079169   

PRIDE

D7F178    D7F179   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR004244   Transposase_22        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR027124   Swc5/CFDP2       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF50978   SSF50978       

Gene 3D

3.60.10.10     1.25.40.10     2.130.10.10    

ProteinModelPortal

A0A0L7KL25   A0A2A4KAH5   A0A0L7KMI6   A0A194RRA2   D7F178   A0A2H1WF27   + More
A0A0L7L607   A0A0L7LLD6   A0A0L7LJT1   A0A0L7KFW9   A0A2H1WS99   A0A0L7LIY0   A0A2A4JB54   A0A0L7LL17   A0A0L7LUV7   A0A0L7KKY9   A0A0L7KQ23   A0A0L7LDK8   A0A2A4JED5   A0A2A4J1F3   A0A2W1BGL1   A0A2A4J3C0   A0A2A4IX08   A0A0L7LNS8   A0A0L7KX87   D7F179   A0A0L7L7G4   A0A2H1V457   A0A2H1V475   A0A1Y1KNT7   A0A1S3DLA6   A0A1S4EPY6   A0A3Q0IIJ5  

KEGG

101743231    no KO assigned | (RefSeq) uncharacterized LOC101743231

GO

GO:0004519   GO:0003964   GO:0031514  

PANTHER

PTHR11505   PTHR23227  

Length:

273

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00393

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01418

outside

1  -  273

 

 

Pi

237.81782

Theta

186.858496

Tajima's D

0.761405

CLR

0

CSRT

0.589120543972801

Interpretation

Uncertain