Silkworm Genome Informatics Database

Gene

KWMTBOMO01412

Pre Gene Modal

BGIBMGA008961

Annotation

PREDICTED:_uncharacterized_protein_LOC101737731_[Bombyx_mori]

Location

Bomo_Chr3(-):10202068-10204480 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Nuclear Reliability : 3.906

CDS

ATGCCGTCTTGTGTTATGAGATACTGTAGGAGCCATTCAAGAAAATCGAATAGAGGTAGTGGAGTATCATTTCATCGGTTCCTCAAACCGGATCAGAAGAATAGAGATTTATGGATACAATTCGTTCGAAATGACAGAAGAGAAGAGACGTGGTATCCATCGGATCATTCCTGCGTTTGCTCGTTACATTTCAAAGAAGAAGACAAATACGTATCGGATAATGGAAGGATATTTTTAAAACCCAACGCTGTACCAAGCTTAAACTCCAATCCAGTGAAGCCAGAATTTGTCAATCGCGATCCTGTTACAATACCAAATGCAGATCCAAACGTTATACACGTTCCTGAATCAATAACGGATCCATTAGCCGAGTCCTTGGAGCCATTAGTCGAACCAGAAGTTAGTAATGCAGTCACCTCCGCGGAATTCTACTTGAGAAAACGTTTGTTCACCGAAATGAAAGCAAAGAAACATCTCTCGAACAGCCTGAAGCAAGTTCGACGCCAAAACAGATACTTGACCGAAAAATGTAAAACATACCAGCAGATGATAGAGACTTTGAAACAAGAGATCGAAATGAAATACGCTAATATGACGGTCAAACCAGAACCCGCCGACGACTAA

Protein

MPSCVMRYCRSHSRKSNRGSGVSFHRFLKPDQKNRDLWIQFVRNDRREETWYPSDHSCVCSLHFKEEDKYVSDNGRIFLKPNAVPSLNSNPVKPEFVNRDPVTIPNADPNVIHVPESITDPLAESLEPLVEPEVSNAVTSAEFYLRKRLFTEMKAKKHLSNSLKQVRRQNRYLTEKCKTYQQMIETLKQEIEMKYANMTVKPEPADD

Uniprot

H9JHG4 A0A194Q3V2 A0A194Q151 A0A2D0RQ61 Q1KZX7 A0A3B1KCC9 + More
A0A3B4CX76 A0A2D0RQ65 A0A2A4K678 A0A226F6B1 A0A182I2V4 A0A182XQ36 A0A151MB72 A0A182RLM1

Pubmed

19121390 26354079 16919158 25329095 22293439

EMBL

BABH01012529 KQ459586 KPI98085.1 KQ459580 KPI99281.1 DQ301496 + More
ABC16633.1 NWSH01000138 PCG79170.1 LNIX01000001 OXA64741.1 APCN01000187 AKHW03006283 KYO21751.1

Proteomes

UP000005204 UP000053268 UP000221080 UP000018467 UP000261440 UP000218220 + More
UP000198287 UP000075840 UP000076407 UP000050525 UP000075900

PRIDE

H9JHG4

Pfam

PF05485   THAP        + More
PF02580   Tyr_Deacylase
PF17921   Integrase_H2C2
PF12596   Tnp_P_element_C
PF12017   Tnp_P_element
PF00249   Myb_DNA-binding
PF05699   Dimer_Tnp_hAT

Interpro

IPR006612   THAP_Znf        + More
IPR038441   THAP_Znf_sf
IPR026516   THAP1
IPR041588   Integrase_H2C2
IPR003732   Daa-tRNA_deacyls_DTD
IPR023509   DTD-like_sf
IPR021896   Transposase_37
IPR022242   87kDa_transposase
IPR037220   BED_dom
IPR017930   Myb_dom
IPR008906   HATC_C_dom
IPR009057   Homeobox-like_sf
IPR001005   SANT/Myb
IPR012337   RNaseH-like_sf

SUPFAM

SSF69500   SSF69500        + More
SSF53098   SSF53098
SSF140996   SSF140996
SSF46689   SSF46689

Gene 3D

3.30.40.180 3.50.80.10

CDD

cd00167 SANT

ProteinModelPortal

H9JHG4 A0A194Q3V2 A0A194Q151 A0A2D0RQ61 Q1KZX7 A0A3B1KCC9 + More
A0A3B4CX76 A0A2D0RQ65 A0A2A4K678 A0A226F6B1 A0A182I2V4 A0A182XQ36 A0A151MB72 A0A182RLM1

PDB

2D8R E-value=0.0195134, Score=85

KEGG

101741784 K23203 THAP domain-containing protein 1/3 | (RefSeq) uncharacterized LOC101741784

GO

GO:0003677 GO:0051499 GO:0005737 GO:0004803 GO:0006313 GO:0046983 GO:0003676 GO:0007423 GO:0006355 GO:0006396 GO:0005634 GO:0004518 GO:0003824 GO:0006334 GO:0003779 GO:0016021

PANTHER

PTHR46600:SF1 PTHR10472

Length:

207

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.22420

outside

1 - 207

Pi

272.441766

Theta

208.348378

Tajima's D

1.028337

CLR

0

CSRT

0.666066696665167

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics