Gene

KWMTBOMO01406  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008966

Annotation

LSM_Sm-like_protein_family_member_[Bombyx_mori]

Location

Bomo_Chr3(-):9971028-9971706      View in EpiBrowser

Full name

U6 snRNA-associated Sm-like protein LSm3      

Location in the cell

Cytoplasmic   Reliability : 1.928 Nuclear   Reliability : 1.4

CDS

ATGGCAGACGATACTGAAAATGTAGCTGTTATGACCGTAAAAGAACCTTTGGATTTGATAAGGCTTAGCTTAGATGAGAGAATTTATGTTAAAATGCGTAATGAACGAGAGCTCAGAGGCAAACTGCATGCCTATGATCAACATCTGAATATGGTATTAGGAGATGCCGAAGAAACTATAACAACCGTTGAAATCGACGAAGAAACATACGAAGAAGTGTACAGAACTACAAAACGAACTATTCCTATGTTATTTGTAAGAGGAGATGGTGTCATACTTGTTTCACCACCAGTACGTGTTAGTATTTAA

Protein

MADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTTKRTIPMLFVRGDGVILVSPPVRVSI

Description

Binds specifically to the 3'-terminal U-tract of U6 snRNA.

Subunit

LSm subunits form a heteromer with a doughnut shape.

Similarity

Belongs to the snRNP Sm proteins family.

Uniprot

H9JHG9   Q1HPZ4   A0A2A4K258   A0A194RLH3   A0A2W1BQV2   A0A0L7LDP3   + More
A0A2H1V825   S4P422   A0A2P8YRG5   E0VGQ4   A0A067RDV3   A0A087U5A3   D6WUX0   A0A1B6K8B9   A0A1B6FJF6   A0A2L2YH15   A0A212EYL9   A0A1B2M4Z5   A0A194Q4E7   A0A034WRS9   A0A0C9QXA7   W8B9T4   K7IRV1   A0A1B6M6K9   A0A1W4X0H3   A0A224Y2Z4   A0A023FB18   A0A069DNR0   R4FPC9   A0A2R5LCQ4   A0A2A3E9L1   V9IJG3   A0A088A6U5   A0A1W4U853   A0A0R1ECF6   Q8IMX8   Q8IGW7   A0A1B0B7G9   A0A0P4VTC5   A0A0V0GB21   A0A0K8TN37   A0A0C9SBT1   A0A1L8DH02   D3TPY5   B7PD40   Q16V68   T1E8W6   A0A1Q3FVB8   A0A2M3ZJR4   A0A2M4AVX2   A0A2M4C4B0   W5JE57   A0A182JEU7   A0A182FRH3   A0A023EER6   A0A023GEG6   A0A0Q9WUD6   A0A0Q9WY37   B4G443   A0A0Q9X4S0   B5DVH7   A0A162QND9   E9GWX6   A0A2J7QGM1   A0A0A9ZFV7   A0A146LSM6   A0A1I8NI97   A0A1I8PD10   B4QSE5   A0A1L8EGZ3   B0W2G0   A7RNM2   A0A0K8T7E8   A0A1Y1NMX5   U5ESJ1   A0A0P5UDM9   A0A0P8XYK2   A0A210QZR6   A0A182YAH0   A0A182PGW7   A0A182MTG2   A0A182SAJ8   A0A182QDX9   A0A182UNL6   A0A182JR50   A0A182VWH1   A0A182U9L3   A0A182WS94   F5HMM7   A0A182R4X5   A0A182HL44   A0A0K8RP94   A0A0R3P1P0   A0A0B7ANZ4   A0A1W2WGW2   B3P8A7   A0A1B0CEF5   T1JAU3   E7EZE6   A0A1B0GME9  

Pubmed

19121390    26354079    28756777    26227816    23622113    29403074    + More
20566863    24845553    18362917    19820115    26561354    22118469    25348373    24495485    20075255    25474469    26334808    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    27129103    26369729    26131772    20353571    17510324    20920257    23761445    24945155    26483478    15632085    23185243    21292972    25401762    26823975    25315136    17615350    28004739    28812685    25244985    12364791    14747013    17210077    23594743   

EMBL

BABH01012545    DQ443258    ABF51347.1    NWSH01000290    PCG77722.1    KQ459989    + More
KPJ18683.1    KZ149972    PZC76014.1    JTDY01001542    KOB73597.1    ODYU01001166    SOQ36995.1    GAIX01009232    JAA83328.1    PYGN01000412    PSN46842.1    AAZO01002206    DS235150    EEB12560.1    KK852699    KDR18195.1    KK118248    KFM72542.1    KQ971357    EFA08353.1    GECU01000283    JAT07424.1    GECZ01019441    GECZ01003235    JAS50328.1    JAS66534.1    IAAA01020117    IAAA01020118    LAA07431.1    AGBW02011479    OWR46585.1    KX467786    AOA60282.1    KQ459562    KPI99884.1    GAKP01000691    JAC58261.1    GBYB01008424    JAG78191.1    GAMC01016634    GAMC01016632    JAB89921.1    GEBQ01008446    JAT31531.1    GFTR01001617    JAW14809.1    GBBI01000493    JAC18219.1    GBGD01003593    JAC85296.1    ACPB03013770    GAHY01000944    JAA76566.1    GGLE01003120    MBY07246.1    KZ288312    PBC28417.1    JR047646    AEY60469.1    CM000160    KRK04615.1    AE014297    BT032674    AAN13967.1    ACD81688.1    BT001552    AAN71307.1    JXJN01009613    JXJN01009614    GDKW01001360    JAI55235.1    GECL01001639    JAP04485.1    GDAI01001821    JAI15782.1    GBZX01002812    JAG89928.1    GFDF01008444    JAV05640.1    EZ423487    ADD19763.1    ABJB010218906    ABJB010411988    ABJB010518967    DS688322    EEC04512.1    CH477602    EAT38434.1    GAMD01002398    JAA99192.1    GFDL01003484    JAV31561.1    GGFM01008002    MBW28753.1    GGFK01011618    MBW44939.1    GGFJ01011035    MBW60176.1    ADMH02001783    GGFL01004251    ETN61099.1    MBW68429.1    AXCP01002831    JXUM01143914    GAPW01006425    GAPW01006424    KQ569686    JAC07174.1    KXJ68544.1    GBBM01003174    GBBM01003173    JAC32244.1    CH940650    KRF83792.1    CH933806    KRG00927.1    CH479179    EDW24454.1    CH964272    KRG00066.1    CM000070    CH674280    EDY68041.3    EDY71618.2    EDY71620.1    LRGB01000311    KZS19821.1    GL732571    EFX76038.1    NEVH01014361    PNF27727.1    GBHO01002799    JAG40805.1    GDHC01008380    JAQ10249.1    CM000364    EDX14144.1    GFDG01000875    JAV17924.1    DS231826    EDS28706.1    DS469523    EDO46880.1    GBRD01004363    JAG61458.1    GEZM01002214    JAV97337.1    GANO01003217    JAB56654.1    GDIP01114565    JAL89149.1    CH902617    KPU79699.1    NEDP02001128    OWF54244.1    AXCM01006397    AXCN02001528    AAAB01008987    EGK97549.1    APCN01000881    GADI01000957    JAA72851.1    KRT05631.1    HACG01035904    CEK82769.1    CH954182    EDV53931.1    AJWK01008837    JH432004    CABZ01028296    AJVK01024477   

Proteomes

UP000005204    UP000218220    UP000053240    UP000037510    UP000245037    UP000009046    + More
UP000027135    UP000054359    UP000007266    UP000007151    UP000053268    UP000002358    UP000192223    UP000015103    UP000242457    UP000005203    UP000192221    UP000002282    UP000000803    UP000092460    UP000001555    UP000008820    UP000000673    UP000075880    UP000069272    UP000069940    UP000249989    UP000008792    UP000009192    UP000008744    UP000007798    UP000001819    UP000076858    UP000000305    UP000235965    UP000095301    UP000095300    UP000000304    UP000002320    UP000001593    UP000007801    UP000242188    UP000076408    UP000075885    UP000075883    UP000075901    UP000075886    UP000075903    UP000075881    UP000075920    UP000075902    UP000076407    UP000007062    UP000075900    UP000075840    UP000008711    UP000092461    UP000000437    UP000092462   

PRIDE

H9JHG9    Q1HPZ4    Q8IMX8    Q8IGW7   

Pfam

PF01423   LSM        + More
PF13879   KIAA1430

Interpro

IPR001163   LSM_dom_euk/arc        + More
IPR040002   Sm-like_LSM3       
IPR010920   LSM_dom_sf       
IPR034105   Lsm3       
IPR029488   Hmw/CFAP97D1       

SUPFAM

SSF50182   SSF50182       

CDD

cd01730  LSm3

ProteinModelPortal

H9JHG9   Q1HPZ4   A0A2A4K258   A0A194RLH3   A0A2W1BQV2   A0A0L7LDP3   + More
A0A2H1V825   S4P422   A0A2P8YRG5   E0VGQ4   A0A067RDV3   A0A087U5A3   D6WUX0   A0A1B6K8B9   A0A1B6FJF6   A0A2L2YH15   A0A212EYL9   A0A1B2M4Z5   A0A194Q4E7   A0A034WRS9   A0A0C9QXA7   W8B9T4   K7IRV1   A0A1B6M6K9   A0A1W4X0H3   A0A224Y2Z4   A0A023FB18   A0A069DNR0   R4FPC9   A0A2R5LCQ4   A0A2A3E9L1   V9IJG3   A0A088A6U5   A0A1W4U853   A0A0R1ECF6   Q8IMX8   Q8IGW7   A0A1B0B7G9   A0A0P4VTC5   A0A0V0GB21   A0A0K8TN37   A0A0C9SBT1   A0A1L8DH02   D3TPY5   B7PD40   Q16V68   T1E8W6   A0A1Q3FVB8   A0A2M3ZJR4   A0A2M4AVX2   A0A2M4C4B0   W5JE57   A0A182JEU7   A0A182FRH3   A0A023EER6   A0A023GEG6   A0A0Q9WUD6   A0A0Q9WY37   B4G443   A0A0Q9X4S0   B5DVH7   A0A162QND9   E9GWX6   A0A2J7QGM1   A0A0A9ZFV7   A0A146LSM6   A0A1I8NI97   A0A1I8PD10   B4QSE5   A0A1L8EGZ3   B0W2G0   A7RNM2   A0A0K8T7E8   A0A1Y1NMX5   U5ESJ1   A0A0P5UDM9   A0A0P8XYK2   A0A210QZR6   A0A182YAH0   A0A182PGW7   A0A182MTG2   A0A182SAJ8   A0A182QDX9   A0A182UNL6   A0A182JR50   A0A182VWH1   A0A182U9L3   A0A182WS94   F5HMM7   A0A182R4X5   A0A182HL44   A0A0K8RP94   A0A0R3P1P0   A0A0B7ANZ4   A0A1W2WGW2   B3P8A7   A0A1B0CEF5   T1JAU3   E7EZE6   A0A1B0GME9  

PDB

6QX9     E-value=1.73013e-26,     Score=289

KEGG

732955    K12622 U6 snRNA-associated Sm-like protein LSm3 | (RefSeq) LSM Sm-like protein family member

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)
03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:1990726   GO:0003723   GO:0000956   GO:0033962   GO:0071013   GO:0000398   GO:0000932   GO:0005688   GO:0046540   GO:0071011  

PANTHER

PTHR13110  

Subcellular location

Nucleus  

Length:

102

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11904

Exp number, first 60 AAs:

0.00076

Total prob of N-in:

0.37758

outside

1  -  102

 

 

Pi

266.054203

Theta

210.951925

Tajima's D

0.822363

CLR

0.211416

CSRT

0.607819609019549

Interpretation

Uncertain