Gene

KWMTBOMO01403

Pre Gene Modal

BGIBMGA008967

Annotation

PREDICTED:_ribonuclease_ZC3H12A_[Bombyx_mori]

Location

Bomo_Chr3(-):9922080-9940806      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.091

CDS

ATGTCTCAAGAGACGGAACTTTTGATATCAGTGCCGCGTACGTGTATAAAAGAATTTCGGAGTAAATATCTAAATCTAGTTGAAACTTTTTACTATGTTACATTAACCGAGATTAAATCTAGTTTCGCAAATGAGGAAACGGAATTTGTTTACTTCAACGTAACATTTAACTTGAACTCAACAGATGGGAACAATAACCCACGTGAATTAATAGGACGTATACAGAAATATGTGGAGTCATCGTTGGGATGGGCCGGCGAACGCGCCGAGGACTCTAGCTATGATTCCGAATGCGAAGAAGACAGTGCGCATCGTGCCGCCTCTCGCACCCCTTCCGACACACTCGCCGCGGAGTTCGCTGAATACGTCACCGTCACGCCTTCGGTACCACAACCAAACCAGGCTAAAATCGAATTTGCCGTGAAACTGGGTTATTCGGAACGTCTGGCAAGGATAGCACTGCAGCGCTTGGGTCAAGACCCTCCCCGAAATGAGCTTCTGGCGGAGCTCATAAGACTTGCAGCGCAGCAACCTCCCCGCGCGCCCTCGCCTCCCCCTCCCGCCGAGGTTGACCCGACACCTGAAAGGTCGCCGCTGCGGCAAATCGTCATTGACGGTAGCAACGTCGCTATGAGCCACGGAAACAAGGAAGTTTTTTCTTGTCGCGGTATAGAAATATGCGTTGATTGGTTCCGAGCTCGCGGCCACAAAGAGATCATCGTGTTCGTACCCAAATGGCGTAAGGAAGCATCTCGGCCCGACAACCCCGTCGCCGACCGGGACGTGCTGGACCGGCTGGAGCGCGACCGCGTGCTCGTCTACACGCCCAGCAGGCTGCTCGGCGGCAAGCGTCTCGTGTGCTATGACGACCGATACGTACTGCGTTTGGCCGCGGACACAGACGGGATCGTCGTCTCCAACGACAATTACCGCGACCTCGCTGCAGAGAGCCCCGATTTTCGCCGGGTCGTCGAGGAACGTCTACTTATGTACTCATTCGTTAACGATCGGTTCATGCCCCCGGAAGACCCTCTTGGCCGAACGGGTCCGACGCTCGATGCCTTCCTCCGCATACCCCCCTCCCGCGTCGAACCTCCGCCCCCCTGCCCGTACGGCCGAAAATGCACCTACGGGAACAAATGCAAATTTTATCATCCGGAACGAGCGGGTCGACCGCATAAATCAGTCGCTGAAAAACTGAGCGAACGTGCCGCCAAGGCCTTGCGCGCTCGCGACTTGCACACGGTCAGCCTCCCGCCCGGCGGCCGCCCTTCCGACTCGAAGCGTCCACTCGCGCGAGCTCACTCCGCCGCTCCGCGCCTCGCCGACACGGCACTCGCTACGCACTTCGATCGCGCACAGCTGCAGCCGGCCGGGCCGTCGGCACCGTCTTCGTCCCCGGACTTCAACCCGCATCGCAAACTCGCCCGCCAGCTCACTCTGAATCCAGCGTGCGACCCGCGACTGCACGCGCTGGCGAGCCGCGTGGCCAGCGCGCCGGGGCAGGGGGGCGCGGCGTGCGGGGCGGCGGGGGCGGCGCGGCTGGCGGCGGGCGCGTCGGACGGCGCGTTGCAGCACTGGGACGCGCGGCGCCGTATGCACTTCCATTTATCCGCCATCTTCCCAGAGGCGCAGGTGGCGGAGGCGATGGCCGCATACCCGGAAGAGACGGACGCACAGAAAATGTGCGCAATTATTTTAGCGCGGTACCGGCCCAGCGAGGCGCCCCCGCCGCGGCCGCTGCGCTAG

Protein

MSQETELLISVPRTCIKEFRSKYLNLVETFYYVTLTEIKSSFANEETEFVYFNVTFNLNSTDGNNNPRELIGRIQKYVESSLGWAGERAEDSSYDSECEEDSAHRAASRTPSDTLAAEFAEYVTVTPSVPQPNQAKIEFAVKLGYSERLARIALQRLGQDPPRNELLAELIRLAAQQPPRAPSPPPPAEVDPTPERSPLRQIVIDGSNVAMSHGNKEVFSCRGIEICVDWFRARGHKEIIVFVPKWRKEASRPDNPVADRDVLDRLERDRVLVYTPSRLLGGKRLVCYDDRYVLRLAADTDGIVVSNDNYRDLAAESPDFRRVVEERLLMYSFVNDRFMPPEDPLGRTGPTLDAFLRIPPSRVEPPPPCPYGRKCTYGNKCKFYHPERAGRPHKSVAEKLSERAAKALRARDLHTVSLPPGGRPSDSKRPLARAHSAAPRLADTALATHFDRAQLQPAGPSAPSSSPDFNPHRKLARQLTLNPACDPRLHALASRVASAPGQGGAACGAAGAARLAAGASDGALQHWDARRRMHFHLSAIFPEAQVAEAMAAYPEETDAQKMCAIILARYRPSEAPPPRPLR

Uniprot

A0A212EYI9   A0A2A4K129   A0A194Q3F8   A0A2W1BM62   A0A0L7LDW4   A0A194RMD3   + More
A0A2A4K0G3   A0A0K8TCB8   A0A0A9WHH3   N6TPY1   A0A0K8TD27   T1IG10   A0A139WE23   A0A2A3E691   Q16PG3   A0A151WIE7   A0A2S2QX38   A0A1Y1JW92   E9J5W8   A0A151I0Q1   A0A195FUK9   A0A026WFL4   A0A158NYB7   A0A151IVX5   E2BQI3   A0A154PIB2   A0A0L7R3D6   A0A023F1Y1   A0A182VKI8   A0A1W4X212   A0A1B6DQW7   A0A1B6KI14   J9JKG9   A0A1S3DK04   A0A182UKL5   A0A2H8TFE8   A0A2R7WZS8   A0A1L8DXX1   A0A1L8DY25   A0A1B6KE42   Q7PKK5   F4WR04   A0A182YBH2   A0A2R5L971   A0A147BNH0   A0A131XVN8   A0A1Z5KX74   A0A1Z5L3M3   A0A2M4CII1  

Pubmed

22118469    26354079    28756777    26227816    25401762    23537049    + More
18362917    19820115    17510324    28004739    21282665    24508170    21347285    20798317    25474469    12364791    14747013    17210077    21719571    25244985    29652888    28528879   

EMBL

AGBW02011495    OWR46562.1    NWSH01000290    PCG77726.1    KQ459562    KPI99888.1    + More
KZ149972    PZC76018.1    JTDY01001542    KOB73595.1    KQ459989    KPJ18687.1    PCG77727.1    GBRD01002780    JAG63041.1    GBHO01039294    JAG04310.1    APGK01057150    KB741277    KB632210    ENN71310.1    ERL90140.1    GBRD01002781    JAG63040.1    ACPB03011092    KQ971357    KYB26105.1    KZ288379    PBC26571.1    CH477784    EAT36237.1    KQ983089    KYQ47617.1    GGMS01012489    MBY81692.1    GEZM01098990    JAV53589.1    GL768208    EFZ11787.1    KQ976607    KYM79320.1    KQ981261    KYN44138.1    KK107238    EZA54718.1    ADTU01003652    ADTU01003653    ADTU01003654    ADTU01003655    KQ980882    KYN11944.1    GL449769    EFN82041.1    KQ434924    KZC11573.1    KQ414663    KOC65387.1    GBBI01003155    JAC15557.1    GEDC01009237    JAS28061.1    GEBQ01028879    JAT11098.1    ABLF02032059    GFXV01001028    MBW12833.1    KK856156    PTY25053.1    GFDF01002774    JAV11310.1    GFDF01002775    JAV11309.1    GEBQ01030249    JAT09728.1    AAAB01008987    EAA43225.5    EGK97617.1    GL888280    EGI63362.1    GGLE01001925    MBY06051.1    GEGO01003075    JAR92329.1    GEFM01005404    JAP70392.1    GFJQ02007506    JAV99463.1    GFJQ02004977    JAW01993.1    GGFL01000540    MBW64718.1   

Proteomes

UP000007151    UP000218220    UP000053268    UP000037510    UP000053240    UP000019118    + More
UP000030742    UP000015103    UP000007266    UP000242457    UP000008820    UP000075809    UP000078540    UP000078541    UP000053097    UP000005205    UP000078492    UP000008237    UP000076502    UP000053825    UP000075903    UP000192223    UP000007819    UP000079169    UP000075902    UP000007062    UP000007755    UP000076408   

Pfam

PF11977   RNase_Zc3h12a        + More
PF18039   UBA_6
PF18044   zf-CCCH_4
PF18561   Regnase_1_C

Interpro

IPR040546   Rege-1_UBA-like        + More
IPR021869   RNase_Zc3h12_NYN       
IPR000571   Znf_CCCH       
IPR041367   Znf-CCCH_4       
IPR040757   Regnase_1/ZC3H12_C       

ProteinModelPortal

A0A212EYI9   A0A2A4K129   A0A194Q3F8   A0A2W1BM62   A0A0L7LDW4   A0A194RMD3   + More
A0A2A4K0G3   A0A0K8TCB8   A0A0A9WHH3   N6TPY1   A0A0K8TD27   T1IG10   A0A139WE23   A0A2A3E691   Q16PG3   A0A151WIE7   A0A2S2QX38   A0A1Y1JW92   E9J5W8   A0A151I0Q1   A0A195FUK9   A0A026WFL4   A0A158NYB7   A0A151IVX5   E2BQI3   A0A154PIB2   A0A0L7R3D6   A0A023F1Y1   A0A182VKI8   A0A1W4X212   A0A1B6DQW7   A0A1B6KI14   J9JKG9   A0A1S3DK04   A0A182UKL5   A0A2H8TFE8   A0A2R7WZS8   A0A1L8DXX1   A0A1L8DY25   A0A1B6KE42   Q7PKK5   F4WR04   A0A182YBH2   A0A2R5L971   A0A147BNH0   A0A131XVN8   A0A1Z5KX74   A0A1Z5L3M3   A0A2M4CII1  

PDB

3V33     E-value=1.88411e-66,     Score=643

KEGG

101746590    K18668 ribonuclease ZC3H12 [EC:3.1.-.-] | (RefSeq) ribonuclease ZC3H12A

GO

GO:0046872   GO:0000398   GO:0005634   GO:0006396   GO:0004518   GO:0003824   GO:0006334   GO:0003779   GO:0016021  

Length:

582

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00864999999999999

Exp number, first 60 AAs:

0.00511

Total prob of N-in:

0.00056

outside

1  -  582

 

 

Pi

223.977617

Theta

197.989493

Tajima's D

0.615909

CLR

0.125052

CSRT

0.548322583870806

Interpretation

Uncertain