Gene

KWMTBOMO01400  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008911

Annotation

Pre-mRNA-processing_factor_6_[Papilio_xuthus]

Location

Bomo_Chr3(+):9880537-9904820      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.279

CDS

ATGTCTGTACCACCACAAGCATTTGTAAACAAAAACAAAAAGCATTTCTTAGGCATTCCCGCACCGCTAGGTTATGTCGCTGGTGTAGGAAGAGGAGCTACTGGTTTCACGACTCGATCTGATATTGGTCCTGCAAGAGACGCTAACGATGTGTCTGATGATCGTCATGCACCACCAGCTGCAAAACGTAAGAAAACAGAAGACGAAGATGATGATGAAGACTTAAATGATTCTAACTATGATGAGTTCTCAGGATATAGTGGATCTCTGTTTTCTAAGGATCCTTATGACAAAGACGATGCAGAGGCAGATGCAATCTATGAGTCCATTGACAAGAGGATGGATGAGAAGAGGAAGGAGTATAGAGAAAAAAGACTTAAAGAAGACTTGGAAAGATATCGACAGGAGAGGCCAAAAATTCAACAGCAATTCTCTGACTTGAAACGTGAACTAAAAACAGTTTCTGAAGATGAATGGGCGGCGATCCCCGAAGTAGGCGATGCTCGTAATAGGAAACAGCGCAACCCTCGCGCCGAGAAGTTTACGCCGTTACCAGACAGCGTCTTGTCTAGGAACTTGGGTGGAGAATCGTCGTCTTCAATCGATCCAGGGTCAGGACTAGCGTCTATGATGCCTGGTGTTGTGACTCCAGGGATGTTGACACCATCAGGTGACCTTGATTTAAGAAAGATCGGTCAAGCCAGAAATACGCTTATGACAGTAAAACTCTCACAAGTGTCAGACTCTGTGACAGGTCAAACGGTAGTTGACCCCAAAGGCTATCTGACGGATTTACAGTCAATGATACCAACTTATGGTGGTGATATTAATGACATCAAGAAAGCTAGACTGTTATTGAAATCTGTACGTGAGACAAATCCTAATCATCCACCCGCTTGGATTGCGAGTGCTCGACTAGAGGAAGTAACAGGTAAAGTACAGACAGCACGTAATCTCATAATGAAGGGATGTGAAGTCAATCCGAGCAGTGAAGAGCTATGGCTAGAGGCAGCTCGCTTGCAACCAATAGACACGGCTCGTGCGGTCATAGCTCACGCTGCGAGGAACCTGCCTCACAGTGTCAGGATTTGGGTCAAAGCGGCTGACTTAGAACAAGAGGCAAAGGCGAAACGTCGTGTGTTCCGCAAAGCCTTAGAGCACATTCCGAATTCGGTGCGTCTGTGGAAGGCGGCCGTCGAACTCGAGAATCCGGAAGACGCCCGGATCCTGCTGTCTCGCGCCGTGGAGTGCTGTCCCACCAGCGTCGAGCTGTGGCTGGCTCTGGCGAGACTGGAGAGCTACGAGAACGCAAGGAAGGTGCTGAACAAGGCAAGAGAGAACATCCCTACAGACCGACAGATCTGGGTCACGGCGGCTAAACTCGAAGAAGCGCACGGCAACACTCACATGGTAGAAAAAATTATTGATCGTGCGATAACGTCGCTGAGCGCCAACGGGGTTGAGATCAACCGCGAACATTGGTTTAAAGAAGCCATAGAAGCTGAAAAGTCTGGAGCTGTTTCAACTTGCCAGGCAATCATTCGTGCGGTCATCGGTCACGGAATTGAACCCGAAGATCAGAAGCACACTTGGATGGAAGACGCTGAAGCTTGCGCCACTGAGGGTGCGTTCGAGTGCGCCCGCGCCGTGTACGGGTACGCGCTGTCCGTGTTCCCGTCCAAGAAGTCCATCTGGCTTCGCGCCGCCTACCTGGAGAAGCAGCACGGGACTCGCGCCAGCCTCGAGACGCTGCTGCAGCGGGCCGTCGCGCACTGCCCCAAGTCGGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTGGCTCGCAGGCGACGTACCGGCGGCTCGGGGTATCCTGTCGCTGGCCTTCCAGGCCAATCCCAACTCTGAAGAGATCTGGTTGGCCGCCGTCAAACTGGAGAGCGAGAACAAAGAGTACGACAGAGCGAGACGGCTGCTGGCTAAAGCTAGGGCTTCAGCTCCCACACCGAGAGTGATGATCAAATCAGCGAAACTAGAATGGGCATTGAACAATCTGGACGTAGCCATAAAGTTACTGGACGAAGCGATCAAAGTGTTCGGGGACTACGCAAAGCTTCACATGATGAAGGGACAGATTGAGGAACAAATGGCCAAGGACGAAGACGCTCACAACACATATAGTCAAGGGTTGAAAAAATGTCCAACGAGCGTCCCCATGTGGATCTTGCTGTCGAGACTGGAAGAAAAACTGAAACACGTGACCAAAGCGAGGTCCGTGCTGGAGAAAGCCAGGCTCCGGAATCCTAAAAATGCCGAACTGTGGTTAGAAAGTGTGCGATTGGAAAGACGAAACGGAAGCCCGGAAATAGCTAATGCCGTTATGGCGAAAGCTCTTCAAGAGTGCCCATCTGCCGGTCGACTGTGGGCGGATGCTATCTTCATGGAATCGAGACCGCAGAGGAAGACTAAAAGTGTTGATGCGTTGAAGAAATGCGAACACGACGCCCACGTGCTGCTGGCTGTCTCACAGTTGTTCTGGACGGAGAGGAAACTAAACAAATGCAGGGAATGGTTCAATAGGACGGTAAAAATCGATCCCGACTTGGGGGACGCTTGGGCGTATTTCTATAAATTCGAGTTACTTCACGGCAACGAACAGCAACAGGAGGACGTGAAGTCGCGTTGTCGGGCCGCCGAGCCGCACCACGGCGAGTACTGGTGCAAGTTGATACATACCCTATCTCGGGTGTCATCCGACGAAGATGCCGAGCTATTGTTCGCTATGGTGTCCTCTTACTACGAAAGTATGGGCGCTACAACAGATATCTTCCAGGATCTTATCAACTTAATATTAACGTCGGAATATCTCGATCCTTCGGTGAGATATTACACCATGAAACTTCTGCTTAAAGAGAACATTAAGAGTTTAGCGACCGGTTCTTTCAACTTTACGAGAATCGCCGAGACTTGTCGAAACCTGGAAAGCATAGAATTTTATTCAATACAAACGGCAACACACGAAGAAGAAACTCCATTCAATAAATTGGAGCATATTGAAATAATACAGGGTAACCTGACATCGTCTTGTTTAAAATATTTGATGACCGGCAGCCCGAAACTTAAGAAATTAATTATAGGCGATGAGATCAAGTTAGACGATAACGACATGGCACGAATGTTGCGGAGATATAAATTCGAAAATCTCGAGGGGATATGGTTTCCGAACGCGCCACGTCTCTCGTTAGAGACCGTTGAGCTATTGATGGAGAGCTGTCCAAAGCTGCAAAGTCTCGGACAGCTGAGCGGTTGGCGTTTCACTCCTGACGAAATGATGCTCATGAGAGCGGTCATAGCGAGCACCAATACAGACTTAGTTCTCTCTCCGCTCGGTATATTCCAACAAGGAAACTGA

Protein

MSVPPQAFVNKNKKHFLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPAAKRKKTEDEDDDEDLNDSNYDEFSGYSGSLFSKDPYDKDDAEADAIYESIDKRMDEKRKEYREKRLKEDLERYRQERPKIQQQFSDLKRELKTVSEDEWAAIPEVGDARNRKQRNPRAEKFTPLPDSVLSRNLGGESSSSIDPGSGLASMMPGVVTPGMLTPSGDLDLRKIGQARNTLMTVKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQTARNLIMKGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVFRKALEHIPNSVRLWKAAVELENPEDARILLSRAVECCPTSVELWLALARLESYENARKVLNKARENIPTDRQIWVTAAKLEEAHGNTHMVEKIIDRAITSLSANGVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENKEYDRARRLLAKARASAPTPRVMIKSAKLEWALNNLDVAIKLLDEAIKVFGDYAKLHMMKGQIEEQMAKDEDAHNTYSQGLKKCPTSVPMWILLSRLEEKLKHVTKARSVLEKARLRNPKNAELWLESVRLERRNGSPEIANAVMAKALQECPSAGRLWADAIFMESRPQRKTKSVDALKKCEHDAHVLLAVSQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPHHGEYWCKLIHTLSRVSSDEDAELLFAMVSSYYESMGATTDIFQDLINLILTSEYLDPSVRYYTMKLLLKENIKSLATGSFNFTRIAETCRNLESIEFYSIQTATHEEETPFNKLEHIEIIQGNLTSSCLKYLMTGSPKLKKLIIGDEIKLDDNDMARMLRRYKFENLEGIWFPNAPRLSLETVELLMESCPKLQSLGQLSGWRFTPDEMMLMRAVIASTNTDLVLSPLGIFQQGN

Uniprot

H9JHB4   A0A2H1W4Y1   A0A194Q2V6   A0A194RRL7   A0A212EYI1   A0A2A4K248   + More
D6WW85   A0A2P8XMD4   A0A2J7QC87   A0A067R6N9   A0A0J7KAE8   A0A1B6GZK6   W8BMF5   A0A034VMQ4   A0A0A1XDN6   A0A0K8URM3   A0A1W4W494   E2C5F4   F4X1P6   A0A0C9RCJ8   A0A151X0Z8   A0A026WUB1   A0A151JNU1   E2AX89   A0A151I553   A0A195C3F3   A0A3B0JM69   A0A151JZU3   A0A158NMK8   B4PH19   B3M851   Q29DK3   A0A0A9VZK8   T1P8J3   A0A1W4WEU5   A0A336MFT0   B4N4S8   A0A1W4UQZ1   B3NDV4   B4LD46   A0A232EDV9   K7J4M3   A0A0J9RY03   A0A1B6DFC6   Q9VVU6   E0VQE0   A0A0M4EKM7   A0A1I8QDC2   A0A0L7QVF7   B4QPY3   B4IFX5   A0A2H8TCZ0   A0A2S2Q7V1   A0A1Y1M7J4   A0A1A9YIC6   A0A1B0B6Z3   A0A2A3EMQ5   A0A087ZWC3   A0A1B0G3C3   J9JRB6   A0A310SUN5   A0A1A9UGB3   A0A1A9ZUB3   T1I7P6   A0A3Q0J1J2   A0A0V0G984   A0A1B0CEQ4   A0A023F5S0   A0A182JZT7   A0A069DWT9   A0A1S4FQ40   A0A182PHL8   Q16T65   A0A1Q3F5G5   B0XBG0   A0A182NGV7   N6TPH4   A0A154PSV0   A0A182Q5D1   A0A182LJ54   Q7Q6W1   A0A182HMK1   A0A182Y198   A0A182G124   A0A182V3A7   A0A182LZ28   A0A084WK60   B4KZ76   A0A1B0EVE3   A0A2M4AH55   A0A182WII7   W5JCX4   A0A182RF90   A0A182FDS2   A0A182J2P5   A0A182U7H0   B4H6U6   A0A1J1HSY1   A0A2R7WYD5  

Pubmed

19121390    26354079    22118469    18362917    19820115    29403074    + More
24845553    24495485    25348373    25830018    20798317    21719571    24508170    21347285    17994087    17550304    15632085    25401762    26823975    25315136    28648823    20075255    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20566863    28004739    25474469    26334808    17510324    23537049    20966253    12364791    14747013    17210077    25244985    26483478    24438588    20920257    23761445   

EMBL

BABH01012554    BABH01012555    BABH01012556    ODYU01006335    SOQ48097.1    KQ459562    + More
KPI99892.1    KQ459989    KPJ18691.1    AGBW02011495    OWR46558.1    NWSH01000290    PCG77712.1    KQ971361    EFA08170.1    PYGN01001729    PSN33158.1    NEVH01016291    PNF26193.1    KK852665    KDR18974.1    LBMM01010549    KMQ87398.1    GECZ01001931    JAS67838.1    GAMC01015691    JAB90864.1    GAKP01015233    GAKP01015231    JAC43719.1    GBXI01004783    JAD09509.1    GDHF01022977    JAI29337.1    GL452770    EFN76767.1    GL888547    EGI59622.1    GBYB01003390    GBYB01010836    GBYB01010837    GBYB01015179    JAG73157.1    JAG80603.1    JAG80604.1    JAG84946.1    KQ982617    KYQ53818.1    KK107119    EZA58684.1    KQ978812    KYN28164.1    GL443520    EFN61972.1    KQ976437    KYM86933.1    KQ978350    KYM94708.1    OUUW01000002    SPP76530.1    KQ981377    KYN42378.1    ADTU01002351    CM000159    EDW95389.1    CH902618    EDV40990.1    CH379070    EAL30411.2    GBHO01044002    GBHO01044001    GBRD01010019    GDHC01002226    JAF99601.1    JAF99602.1    JAG55805.1    JAQ16403.1    KA645071    AFP59700.1    UFQS01000784    UFQT01000784    SSX06853.1    SSX27197.1    CH964095    EDW79152.1    CH954178    EDV52308.1    CH940647    EDW69927.1    NNAY01005940    OXU16514.1    AAZX01010963    CM002912    KMZ00468.1    GEDC01012897    JAS24401.1    AE014296    BT021415    AAF49211.2    AAX33563.1    DS235418    EEB15596.1    CP012525    ALC43835.1    KQ414727    KOC62471.1    CM000363    EDX11011.1    CH480834    EDW46562.1    GFXV01000181    MBW11986.1    GGMS01004620    MBY73823.1    GEZM01038783    JAV81511.1    JXJN01009327    KZ288215    PBC32552.1    CCAG010013760    ABLF02018459    KQ759851    OAD62549.1    ACPB03000176    GECL01001651    JAP04473.1    AJWK01009068    GBBI01002188    JAC16524.1    GBGD01000366    JAC88523.1    CH477659    EAT37642.1    GFDL01012243    JAV22802.1    DS232633    EDS44272.1    APGK01056781    KB741277    KB632196    ENN71120.1    ERL89982.1    KQ435127    KZC14837.1    AXCN02000366    AAAB01008960    EAA11732.1    APCN01007347    JXUM01038041    JXUM01038042    JXUM01038043    KQ561151    KXJ79550.1    AXCM01001296    ATLV01024094    KE525349    KFB50604.1    CH933809    EDW18902.2    AJWK01017901    GGFK01006790    MBW40111.1    ADMH02001746    ETN61203.1    CH479215    EDW33534.1    CVRI01000020    CRK91109.1    KK855991    PTY24558.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000218220    UP000007266    + More
UP000245037    UP000235965    UP000027135    UP000036403    UP000192223    UP000008237    UP000007755    UP000075809    UP000053097    UP000078492    UP000000311    UP000078540    UP000078542    UP000268350    UP000078541    UP000005205    UP000002282    UP000007801    UP000001819    UP000095301    UP000007798    UP000192221    UP000008711    UP000008792    UP000215335    UP000002358    UP000000803    UP000009046    UP000092553    UP000095300    UP000053825    UP000000304    UP000001292    UP000092443    UP000092460    UP000242457    UP000005203    UP000092444    UP000007819    UP000078200    UP000092445    UP000015103    UP000079169    UP000092461    UP000075881    UP000075885    UP000008820    UP000002320    UP000075884    UP000019118    UP000030742    UP000076502    UP000075886    UP000075882    UP000007062    UP000075840    UP000076408    UP000069940    UP000249989    UP000075903    UP000075883    UP000030765    UP000009192    UP000075920    UP000000673    UP000075900    UP000069272    UP000075880    UP000075902    UP000008744    UP000183832   

PRIDE

H9JHB4    Q9VVU6    A0A087ZWC3   

Pfam

PF06424   PRP1_N        + More
PF13181   TPR_8

Interpro

IPR027108   Prp6/Prp1/STA1        + More
IPR010491   PRP1_N       
IPR003107   HAT       
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9JHB4   A0A2H1W4Y1   A0A194Q2V6   A0A194RRL7   A0A212EYI1   A0A2A4K248   + More
D6WW85   A0A2P8XMD4   A0A2J7QC87   A0A067R6N9   A0A0J7KAE8   A0A1B6GZK6   W8BMF5   A0A034VMQ4   A0A0A1XDN6   A0A0K8URM3   A0A1W4W494   E2C5F4   F4X1P6   A0A0C9RCJ8   A0A151X0Z8   A0A026WUB1   A0A151JNU1   E2AX89   A0A151I553   A0A195C3F3   A0A3B0JM69   A0A151JZU3   A0A158NMK8   B4PH19   B3M851   Q29DK3   A0A0A9VZK8   T1P8J3   A0A1W4WEU5   A0A336MFT0   B4N4S8   A0A1W4UQZ1   B3NDV4   B4LD46   A0A232EDV9   K7J4M3   A0A0J9RY03   A0A1B6DFC6   Q9VVU6   E0VQE0   A0A0M4EKM7   A0A1I8QDC2   A0A0L7QVF7   B4QPY3   B4IFX5   A0A2H8TCZ0   A0A2S2Q7V1   A0A1Y1M7J4   A0A1A9YIC6   A0A1B0B6Z3   A0A2A3EMQ5   A0A087ZWC3   A0A1B0G3C3   J9JRB6   A0A310SUN5   A0A1A9UGB3   A0A1A9ZUB3   T1I7P6   A0A3Q0J1J2   A0A0V0G984   A0A1B0CEQ4   A0A023F5S0   A0A182JZT7   A0A069DWT9   A0A1S4FQ40   A0A182PHL8   Q16T65   A0A1Q3F5G5   B0XBG0   A0A182NGV7   N6TPH4   A0A154PSV0   A0A182Q5D1   A0A182LJ54   Q7Q6W1   A0A182HMK1   A0A182Y198   A0A182G124   A0A182V3A7   A0A182LZ28   A0A084WK60   B4KZ76   A0A1B0EVE3   A0A2M4AH55   A0A182WII7   W5JCX4   A0A182RF90   A0A182FDS2   A0A182J2P5   A0A182U7H0   B4H6U6   A0A1J1HSY1   A0A2R7WYD5  

PDB

6QW6     E-value=0,     Score=3240

KEGG

101742953    K12855 pre-mRNA-processing factor 6 | (RefSeq) pre-mRNA-processing factor 6

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000398   GO:0005634   GO:0046540   GO:0000244   GO:0071013   GO:0000381   GO:0071011   GO:0030532   GO:0003723   GO:0005515   GO:0006396   GO:0004518   GO:0003824   GO:0006334   GO:0003779   GO:0016021  

PANTHER

PTHR11246:SF1  

Length:

1130

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.53883

Exp number, first 60 AAs:

0.31448

Total prob of N-in:

0.01514

outside

1  -  1130

 

 

Pi

21.561519

Theta

168.23706

Tajima's D

0.534775

CLR

0.340484

CSRT

0.525223738813059

Interpretation

Uncertain