Silkworm Genome Informatics Database

Gene

KWMTBOMO01395

Annotation

PREDICTED:_runt-related_transcription_factor_3-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr3(+):9791057-9852273 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.395

CDS

ATGTACCCTTCGTATAGCACCCTTCAGCCTGCATATTACAAGCCTGAACCAGCCATACACATACCTGCGATCTTACCCGAATTACCTCTTGGGCACGCTGACTATAGTGGGTTCCAGTCAAGTACAACTAGCTACAAAGGCAGCCCCAGTGGAACGAGTTCATCACTAACCGAACTAAACCCAACAACGCCTGTTACTACGCAGCGCTACGACTCCAACTACTACAACTCGTGGCCAGCAAATTCTTCCTCAGATAAATATAACTTAGAGCAGTGCATCCCAAGTGAGATTAAAATAAGTGATATAGACGGGGGTATATCTATAACGACAGAACTTCAGGGTACAGGGGAGCCGAGTGGTATAGTCCAAACTTGCGAAGCCAACGATGAAGTGAAACACGGAATGTACGGCGCAGGAAGTCAAGAAGTTTGGAGACCATATTGA

Protein

MYPSYSTLQPAYYKPEPAIHIPAILPELPLGHADYSGFQSSTTSYKGSPSGTSSSLTELNPTTPVTTQRYDSNYYNSWPANSSSDKYNLEQCIPSEIKISDIDGGISITTELQGTGEPSGIVQTCEANDEVKHGMYGAGSQEVWRPY

Uniprot

H9JHB1 A0A2W1BM69 A0A2A4K0Y1 A0A2H1VA68 A0A194RRM2 A0A194Q2W3 + More
A0A212FCG3

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01012556 KZ149972 PZC76028.1 NWSH01000290 PCG77719.1 ODYU01001461 + More
SOQ37691.1 KQ459989 KPJ18696.1 KQ459562 KPI99897.1 AGBW02009196 OWR51422.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151

Pfam

PF00853 Runt

Interpro

IPR008967   p53-like_TF_DNA-bd        + More
IPR013524   Runt_dom
IPR012346   p53/RUNT-type_TF_DNA-bd_sf
IPR000040   AML1_Runt

SUPFAM

SSF49417 SSF49417

Gene 3D

2.60.40.720

ProteinModelPortal

H9JHB1 A0A2W1BM69 A0A2A4K0Y1 A0A2H1VA68 A0A194RRM2 A0A194Q2W3 + More
A0A212FCG3

KEGG

101747006 K20214 RUNX transcription factor Lozenge | (RefSeq) runt-related transcription factor 3-like

PATHWAY

04013 MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0003700 GO:0005634 GO:0005524 GO:0003677

PANTHER

PTHR11950

Length:

147

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00103

Exp number, first 60 AAs:

0.00103

Total prob of N-in:

0.08824

outside

1 - 147

Pi

282.025691

Theta

190.657958

Tajima's D

1.623019

CLR

0.200768

CSRT

0.821208939553022

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics