Gene

KWMTBOMO01394

Pre Gene Modal

BGIBMGA008906

Annotation

runt_[Bombyx_mori]

Location

Bomo_Chr3(+):9699387-9712284      View in EpiBrowser

Transcription factor

Runt

Location in the cell

Extracellular   Reliability : 1.102

CDS

ATGGCAGACGTTTACGCTCATATCCACGAGTACTACCGGCAGAGTCACGGAGAGTTAGTACAGACTGGTTCTCCGGCTGTCTTGTGCTCTGCGTTACCTGGCCATTGGAGGTCGAATAAATCATTACCGTTGGCTTTTAAAGTAGTGGCACTAGATGACGTTCAAGACGGCACTCTAGTTACGATAAAGGCTGGAAACGACGAGAACGTGATGGCCGAACTCAGGAACTGTACCGCGGTGATGAAGAACCAAGTGGCAAAGTTCAACGACCTGAGGTTTGTCGGTCGGAGCGGACGAGGCAAGTCCTTCACCCTCACCATCACCATCAGCTCATTTCCTTCACAAGTCGCCACCTACACCAAAGCAATCAAAGTAACGGTCGATGGACCAAGGGAGCCGAGAACAAAACAAAATTATGGCTACGGACACCCAGGACCATTCAGTCCATTCCTTCTGAATCCCGGATGGTTAGATGCGGCGTATCTCAACTACGCCTGGGCCGACTACTTCAGGCCCCCTCAAATGCGAGAGCCTTCCACGCTTATCAAAGGTGGAGCCGCGCCGCTTACTACGCCACCTGTGACGATACCTGGTGCTGATTTATTCCCCTTTCCTCCGGCTGTTACGAATTTACCACCTGGTGGCCTAATACCTCCACCCGGTGCATTCTTACCACCGAACGGTCTTCTACCTTTCCCACCGCACCCGGCGGAACTAGCACTAAAAAGTTTACCCCCTGAACTGTCTCTAAAGAGCGGTTTAACTCCTTATGAAGCGTTACGACAATTTCAAAACAATAATGTACAGTAA

Protein

MADVYAHIHEYYRQSHGELVQTGSPAVLCSALPGHWRSNKSLPLAFKVVALDDVQDGTLVTIKAGNDENVMAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSFPSQVATYTKAIKVTVDGPREPRTKQNYGYGHPGPFSPFLLNPGWLDAAYLNYAWADYFRPPQMREPSTLIKGGAAPLTTPPVTIPGADLFPFPPAVTNLPPGGLIPPPGAFLPPNGLLPFPPHPAELALKSLPPELSLKSGLTPYEALRQFQNNNVQ

Uniprot

A9QLJ3   A0A437BHH1   A0A212FCG8   A0A2H1VVE7   A0A2W1BTD7   A0A0L7KYG2   + More
A0A2A4KAD2   A0A194RLI8   A0A194Q905   A0A1W4X2W2   A0A1Y1NJY4   D6WXH2   B0W2H9   E0VNC8   A0A0C9R130   A0A1A9XSR2   A0A1B0ALZ6   A0A451FV22   A0A088AMA2   A0A1A9WBF5   K7J8P3   A0A232F7J9   A0A0L7RCM0   E2A813   A0A154P3R2   A0A310SDC5   A0A336KU38   A0A336LL11  

Pubmed

18615617    19121390    22118469    28756777    26227816    26354079    + More
28004739    18362917    19820115    20566863    20075255    28648823    20798317   

EMBL

BABH01012562    EU113258    ABW84373.1    RSAL01000057    RVE49841.1    AGBW02009196    + More
OWR51420.1    ODYU01004668    SOQ44799.1    KZ149972    PZC76030.1    JTDY01004320    KOB68298.1    NWSH01000002    PCG81039.1    KQ459989    KPJ18698.1    KQ459562    KPI99900.1    GEZM01002524    JAV97220.1    KQ971361    EFA09257.1    DS231827    EDS29367.1    DS235335    EEB14884.1    GBYB01000576    JAG70343.1    JXJN01000260    MG708332    QAB02872.1    NNAY01000835    OXU26267.1    KQ414615    KOC68555.1    GL437468    EFN70408.1    KQ434796    KZC05770.1    KQ762882    OAD55334.1    UFQS01000796    UFQT01000796    SSX06965.1    SSX27309.1    UFQT01000005    SSX17349.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000037510    UP000218220    UP000053240    + More
UP000053268    UP000192223    UP000007266    UP000002320    UP000009046    UP000092443    UP000092460    UP000005203    UP000091820    UP000002358    UP000215335    UP000053825    UP000000311    UP000076502   

PRIDE

A9QLJ3   

Pfam

PF00853   Runt

Interpro

IPR000040   AML1_Runt        + More
IPR012346   p53/RUNT-type_TF_DNA-bd_sf       
IPR013524   Runt_dom       
IPR008967   p53-like_TF_DNA-bd       

SUPFAM

SSF49417   SSF49417       

Gene 3D

2.60.40.720    

ProteinModelPortal

A9QLJ3   A0A437BHH1   A0A212FCG8   A0A2H1VVE7   A0A2W1BTD7   A0A0L7KYG2   + More
A0A2A4KAD2   A0A194RLI8   A0A194Q905   A0A1W4X2W2   A0A1Y1NJY4   D6WXH2   B0W2H9   E0VNC8   A0A0C9R130   A0A1A9XSR2   A0A1B0ALZ6   A0A451FV22   A0A088AMA2   A0A1A9WBF5   K7J8P3   A0A232F7J9   A0A0L7RCM0   E2A813   A0A154P3R2   A0A310SDC5   A0A336KU38   A0A336LL11  

PDB

4L18     E-value=2.53318e-47,     Score=474

KEGG

100126868    K20213 RUNX transcription factor Runt | (RefSeq) Run; runt

GO

GO:0003677   GO:0005634   GO:0005524   GO:0003700   GO:0006355   GO:0004518   GO:0003824   GO:0006334   GO:0003779   GO:0016021  

PANTHER

PTHR11950  

Length:

269

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0735700000000001

Exp number, first 60 AAs:

0.01161

Total prob of N-in:

0.05999

outside

1  -  269

 

 

Pi

279.871832

Theta

201.291279

Tajima's D

0.269325

CLR

1.317397

CSRT

0.449877506124694

Interpretation

Uncertain