Silkworm Genome Informatics Database

Gene

KWMTBOMO01389

Pre Gene Modal

BGIBMGA008906

Annotation

PREDICTED:_runt-related_transcription_factor_3-like_[Papilio_xuthus]

Location

Bomo_Chr3(+):9462641-9496173 View in EpiBrowser

Transcription factor

Runt

Location in the cell

Nuclear Reliability : 3.376

CDS

ATGCATTTGGCAAGTGAAGTGAGCTCGACAACCAATGGCTTGGGGCACGAGGCTCCGTCGTCAAGTTACAACGGCGGCTCGCTTCCGAGTCAACCATTGACTGCCGAACTGTTGGCAGAAAGGACGTTAGAAGGTTTACTGGCAGACCATCCAGGGGAGCTGGTGAAAACCGGTAGTCCTCACGTGGTATGCACAGTTCTGCCGCCGCATTGGCGATCGAACAAAACCCTACCGGTAGCGTTCAAAGTGGTCGCGCTCGGGGATGTTGGGGACGGCACGTTAGTAACAGTACGCGCAGGCAACGACGAGAATTGTTCGGCTGAACTGAGAAACTGTACTGCAGTAATGAAGAATCAGGTGGCTAAATTCAACGATCTGAGATTCGTTGGTCGAAGCGGAAGAGGGAAATCTTTTACTCTAACGATAATGCTGGCAACTTCTCCTCCGCAAGTCGCGACGTACCAAAAAGCCATCAAAGTCACGGTCGACGGCCCCAGAGAGCCGAGGTCCAAGACTCGACACCACGGTTTCCATCCTTTCCATTTCGGGCCCAGGTTTGCTCCGGATCCTTTGATGGGATCACTACCTTTTAAATTGTCAGGCATAGCTCATCAGTTGGCTGGTCTACCTGGAGGCGAATGGGGAGCGCTAGCCCGGCATTACCCCCCACCAATTCTGCCAGCACATCCGCACTTCACTCCACACGTGCTGCCTCCAGCGCATACACAGCCCCCAGGACCCCCACCGCCTCACGAAAACGACGTGACGTCAGATAATCCAATATCAATGCGCGCTCACAGCACTACGAGTCCAGCGAACTCCCGGCCGTGCTCCCCGCAAGACGATGACATATCCGTCACCGCTTCAATGAGTCCTCCTCCAGACGAACGGCCGGGAGCGTTCACCAGACCAAGAAAACCCCTGCAGCCACTACCGGCTCCGTCGAGTTTATTCCACAGTGCATTAGCCGCTCAATTATTCCTAAATTCCCCTTTACTCCCCACCCCGCCAGCGTGGTTGTATTCGCAACTCTACGGCGGCTACGACTGGTGGCTGCGACCGCCTGCGCCCCAAGAGGATCCCAGCTCGAGCCCAGACCGGGAAGAAGAGAGCTCTACGCCTTCGGTTGCGGGTAAAAAACGTCCCGCGTCCCCAGAGTGGTCGGACCAAAGCGTTCGGACGCGAAGCAAGTCGCTTACGACGCCCGAGAAAAGACCTGTCGATGTCTGGCGCCCGTATTGA

Protein

MHLASEVSSTTNGLGHEAPSSSYNGGSLPSQPLTAELLAERTLEGLLADHPGELVKTGSPHVVCTVLPPHWRSNKTLPVAFKVVALGDVGDGTLVTVRAGNDENCSAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIMLATSPPQVATYQKAIKVTVDGPREPRSKTRHHGFHPFHFGPRFAPDPLMGSLPFKLSGIAHQLAGLPGGEWGALARHYPPPILPAHPHFTPHVLPPAHTQPPGPPPPHENDVTSDNPISMRAHSTTSPANSRPCSPQDDDISVTASMSPPPDERPGAFTRPRKPLQPLPAPSSLFHSALAAQLFLNSPLLPTPPAWLYSQLYGGYDWWLRPPAPQEDPSSSPDREEESSTPSVAGKKRPASPEWSDQSVRTRSKSLTTPEKRPVDVWRPY

Uniprot

A0A2H1V222 A0A2W1BTS8 A0A194Q2X2 A0A194RLJ2 D6WXG4 A0A1W4XJ01 + More
U4U047 U4TXX9 A0A1I8NA60 A0A1I8P654 A0A1I8P5Z3 A0A1J1ICI2

Pubmed

28756777 26354079 18362917 19820115 23537049 25315136 + More

EMBL

ODYU01000332 SOQ34893.1 KZ149972 PZC76036.1 KQ459562 KPI99907.1 + More
KQ459989 KPJ18703.1 KQ971361 EFA09256.2 KB631737 ERL85673.1 ERL85672.1 CVRI01000044 CRK96686.1

Proteomes

UP000053268 UP000053240 UP000007266 UP000192223 UP000030742 UP000095301 + More
UP000095300 UP000183832

Pfam

PF00853 Runt

Interpro

IPR013524   Runt_dom        + More
IPR008967   p53-like_TF_DNA-bd
IPR000040   AML1_Runt
IPR012346   p53/RUNT-type_TF_DNA-bd_sf

SUPFAM

SSF49417 SSF49417

Gene 3D

2.60.40.720

ProteinModelPortal

A0A2H1V222 A0A2W1BTS8 A0A194Q2X2 A0A194RLJ2 D6WXG4 A0A1W4XJ01 + More
U4U047 U4TXX9 A0A1I8NA60 A0A1I8P654 A0A1I8P5Z3 A0A1J1ICI2

PDB

1H9D E-value=1.32324e-50, Score=505

KEGG

105842405 no KO assigned | (RefSeq) proline-rich receptor-like protein kinase PERK10

GO

GO:0005524 GO:0003700 GO:0005634 GO:0003677 GO:0006355 GO:0004518 GO:0003824 GO:0006334 GO:0003779 GO:0016021

PANTHER

PTHR11950

Length:

413

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00954

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00434

outside

1 - 413

Pi

278.15109

Theta

189.445933

Tajima's D

1.347938

CLR

0.008112

CSRT

0.749462526873656

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics