Gene

KWMTBOMO01388

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr3(-):9455432-9456190      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.7

CDS

ATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTCCGTGCTCGGGGCGTGGCGCGTGTCCCGAGAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAACCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAGGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCGGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA

Protein

MGAGGGVARCRLSVAQRAPCSGRGACPESELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGGDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Cofactor

FAD

Similarity

Belongs to the GMC oxidoreductase family.

Uniprot

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A0J7KM11   A0A0J7K2M2   A0A3L8D4Y9   + More
A0A2W1B333   A0A2W1BDU5   A0A3L8DDS1   A0A0J7MZM4   A0A2W1BSQ5   A0A0J7N1D9   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A0J7KCQ3   A0A0J7KS67   A0A2H1WNZ5   A0A2H1VYR8   A0A0J7MY07   A0A0J7KIQ5   A0A0J7KQK3   A0A0J7JZF7   J9KZ24   A0A0J7JZ13   A0A3L8DY91   A0A3L8DXT9   A0A3L8DDV9   A0A0J7KQU9   A0A194R5D3  

Pubmed

12644555    30249741    28756777    26354079   

EMBL

AB090825    BAC57926.1    AB126050    BAD86650.1    LBMM01009501    KMQ88083.1    + More
LBMM01005707    KMQ91279.1    LBMM01016102    KMQ84557.1    QOIP01000014    RLU15083.1    KZ150386    PZC71062.1    KZ150308    PZC71477.1    QOIP01000009    RLU18544.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    KZ149950    PZC76665.1    LBMM01012027    KMQ86470.1    AB078935    BAC06462.1    AB078931    BAC06456.1    AB078930    BAC06454.1    AB078929    BAC06452.1    LBMM01009494    KMQ88097.1    LBMM01003679    KMQ93242.1    ODYU01009945    SOQ54696.1    ODYU01005282    SOQ45985.1    LBMM01014132    KMQ85305.1    LBMM01006996    KMQ90129.1    LBMM01004272    KMQ92618.1    LBMM01019838    KMQ83439.1    ABLF02006132    LBMM01019839    KMQ83438.1    QOIP01000002    RLU25407.1    QOIP01000003    RLU25053.1    QOIP01000010    RLU18098.1    LBMM01004152    KMQ92762.1    KQ460685    KPJ12887.1   

Proteomes

UP000036403    UP000279307    UP000007819    UP000053240   

PRIDE

Q868Q4    Q5KTM7   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00732   GMC_oxred_N

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF51905   SSF51905       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.50.50.60    

ProteinModelPortal

Q868Q4   Q5KTM7   A0A0J7KCI1   A0A0J7KM11   A0A0J7K2M2   A0A3L8D4Y9   + More
A0A2W1B333   A0A2W1BDU5   A0A3L8DDS1   A0A0J7MZM4   A0A2W1BSQ5   A0A0J7N1D9   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A0J7KCQ3   A0A0J7KS67   A0A2H1WNZ5   A0A2H1VYR8   A0A0J7MY07   A0A0J7KIQ5   A0A0J7KQK3   A0A0J7JZF7   J9KZ24   A0A0J7JZ13   A0A3L8DY91   A0A3L8DXT9   A0A3L8DDV9   A0A0J7KQU9   A0A194R5D3  

KEGG

100141455    no KO assigned | (RefSeq) Hig, Bmhig; hikaru genki

GO

GO:0003964   GO:0050660   GO:0016614   GO:0008270   GO:0003676  

Length:

206

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00939

Exp number, first 60 AAs:

6e-05

Total prob of N-in:

0.05894

outside

1  -  206

 

 

Pi

38.853514

Theta

62.49941

Tajima's D

0.755888

CLR

0.00727

CSRT

0.590820458977051

Interpretation

Uncertain