Gene

KWMTBOMO01373

Pre Gene Modal

BGIBMGA008987

Annotation

PREDICTED:_short-chain_dehydrogenase/reductase_family_16C_member_6_[Amyelois_transitella]

Location

Bomo_Chr3(-):9219545-9230970      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.782

CDS

ATGAAAAGTCTCAAAGGGGACGTGGTTTTGGTAACCGGAGGAGGAGGCGGAGTCGGTCGACAACTGGCCATAAAACTCGCGAGGCTTGGAGCAAAAGTCGTTGTATGGGATATTAATAAAGAAGGATTACAAAAAACATGTTCATCTGTTATCGAGGAAGGATACGATATTATAAGTTACGTCGTGGACCTTGCCAATCGTGCTGCAGTATATGAAACCGCTGAAAAAGTGAAAAGAGAAGTAACTATATGCTTTATTTATTACACTTCAACGACCGTCAGGTGTAGTGTCACCCAAAAGGATAGAGCATTGTAG

Protein

MKSLKGDVVLVTGGGGGVGRQLAIKLARLGAKVVVWDINKEGLQKTCSSVIEEGYDIISYVVDLANRAAVYETAEKVKREVTICFIYYTSTTVRCSVTQKDRAL

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JHI9   A0A2W1C020   A0A2A4KB77   A0A0L7KTJ2   A0A194RRP2   I4DNX7   + More
I4DJV0   I4DNX8   A0A194PU52   A0A212EV09   A0A1V9XV48   A0A0T6AXI0   V5GD46   F4X1Q1   W8C6X1   U4U187   A0A026VV64   J3JUE6   N6T0W3   B4NZ10   A0A2A4K3B6  

Pubmed

19121390    28756777    26227816    26354079    22651552    22118469    + More
28327890    21719571    24495485    23537049    24508170    30249741    22516182    17994087    17550304   

EMBL

BABH01012598    BABH01012599    BABH01012600    BABH01012601    BABH01012602    KZ149894    + More
PZC78857.1    NWSH01000002    PCG81053.1    JTDY01005819    KOB66582.1    KQ459989    KPJ18716.1    AK403188    BAM19617.1    AK401568    BAM18190.1    AK403189    BAM19618.1    KQ459591    KPI96941.1    AGBW02012259    OWR45335.1    MNPL01003713    OQR77311.1    LJIG01022602    KRT79700.1    GALX01000391    JAB68075.1    GL888547    EGI59627.1    GAMC01000882    JAC05674.1    KB631786    ERL86068.1    KK107796    QOIP01000013    EZA47617.1    RLU15222.1    BT126859    AEE61821.1    APGK01056809    KB741277    ENN71138.1    CM000157    EDW87674.1    NWSH01000175    PCG78745.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000192247    UP000007755    UP000030742    UP000053097    UP000279307    UP000019118    UP000002282   

PRIDE

H9JHI9   

Pfam

PF00106   adh_short

Interpro

IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JHI9   A0A2W1C020   A0A2A4KB77   A0A0L7KTJ2   A0A194RRP2   I4DNX7   + More
I4DJV0   I4DNX8   A0A194PU52   A0A212EV09   A0A1V9XV48   A0A0T6AXI0   V5GD46   F4X1Q1   W8C6X1   U4U187   A0A026VV64   J3JUE6   N6T0W3   B4NZ10   A0A2A4K3B6  

PDB

1YB1     E-value=6.37329e-09,     Score=138

KEGG

101745197    K15734 all-trans-retinol dehydrogenase (NAD+) [EC:1.1.1.105] | (RefSeq) short-chain dehydrogenase/re

PATHWAY

00830    Retinol metabolism - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016491  

Length:

104

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09262

Exp number, first 60 AAs:

0.07411

Total prob of N-in:

0.17307

outside

1  -  104

 

 

Pi

268.882735

Theta

173.615327

Tajima's D

1.264769

CLR

0.031991

CSRT

0.730263486825659

Interpretation

Uncertain