Gene

KWMTBOMO01371

Pre Gene Modal

BGIBMGA008987

Annotation

PREDICTED:_epidermal_retinol_dehydrogenase_2_[Papilio_polytes]

Location

Bomo_Chr3(-):9211804-9214180      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.549

CDS

ATGATTAAGAGCGGCAAAGGGCACATAGTCACCGTGGGTTCTGTAGCAGGGCTACTCGGCACGTACCGCTGTACTGATTACAGTGCTACCAAGTTTGCAACAGTGGGCTTCCATGAGAGCCTCTTTACAGAGCTAAGGGCCCACGGTCACAATACAATCCACGCTACCCTTGTATGTCCTTATTATATTAACACGGGAATGTTTAACGGAGTTACTCCTCGTCTGATGCCGATGCTAGAACCGGACTATGTTGCGGAAACAATGATTGACTCCATCAGAAAGAATGAAGTCAATTGCATCATGCCCGGTTCCGTCAGATACTTGTTACCTCTGAAGTGTCTACTCCCAGCTAAAATGTGCTGGGATTTGATGCATCGAGTAATGAAAGGCCCTCAGTCAATGATGGAGTTCAAGGGTAAGCCTAAAGTAGCAGGTGGTTAG

Protein

MIKSGKGHIVTVGSVAGLLGTYRCTDYSATKFATVGFHESLFTELRAHGHNTIHATLVCPYYINTGMFNGVTPRLMPMLEPDYVAETMIDSIRKNEVNCIMPGSVRYLLPLKCLLPAKMCWDLMHRVMKGPQSMMEFKGKPKVAGG

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JHI9   A0A2A4KB77   A0A2W1C020   A0A194RRP2   A0A194PU52   I4DJV0   + More
A0A212EV09   I4DNX7   A0A2H1V957   Q16PY7   A0A182KB94   A0A182G6H3   A0A084W895   A0A182RVJ6   A0A023EQU1   A0A023EPN3   A0A182PPJ0   A0A023EQU0   A0A182Q8I1   A0A182W730   A0A182T4E5   A0A2M4A3C5   A0A182NUE1   A0A182M205   A0A182Y087   A0A182JEB9   A0A1B0CW19   A0A182TDH4   A0A0L7R5P1   A0A182L1G5   A0A182WU24   Q7Q403   A0A182HUN6   A0A1J1I0Q6   A0A088A1T2   W5J4M7   T1PJH0   A0A0A1X7E9   A0A182UR22   A0A0A1XGY9   A0A1I8NPC2   A0A0N0BCH2   A0A2A3ELT2   A0A0Q9WX42   A0A0L0CPD9   W8C6X1   B4Q328   Q9VR28   A0A1S4KFV9   B4I3C6   A0A0M3QU59   A0A0M4E9N6   B0XIZ4   A0A1W4UVY0   B3ML91   A0A0K8UPA5   B3N498   B4JD24   B4MDE0   B4NZ10   A0A310SLE3   A0A0K8U1U9   A0A1B0G671   A0A336MF17   A0A3B0JUW5   A0A0K8WFD1   A0A336K2S4   Q29MQ7   B4G8X1   A0A1A9UXB0   A0A1A9Y4P0   A0A1B0ATM4   B4N1A9   B4KFR1   A0A1A9ZN68   E0VQE3   K7ITC1   A0A1A9WBJ4   A0A195B671   A0A158NT41   A0A151X0D3   A0A195C3E0   A0A026VV64   A0A154P2Y2   V5FQF8   A0A151JZR9   D6WW87   A0A1W4WER5   A0A0T6AXI0   E2BNA4   A0A3B0K2N7   J3JUE6   U4U187   N6T0W3   E2A0R4   A0A0L7KTJ2   A0A0L8I2T1  

Pubmed

19121390    28756777    26354079    22651552    22118469    17510324    + More
26483478    24438588    24945155    25244985    20966253    12364791    14747013    17210077    20920257    23761445    25315136    25830018    17994087    26108605    24495485    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    20566863    20075255    21347285    24508170    30249741    18362917    19820115    20798317    22516182    23537049    26227816   

EMBL

BABH01012598    BABH01012599    BABH01012600    BABH01012601    BABH01012602    NWSH01000002    + More
PCG81053.1    KZ149894    PZC78857.1    KQ459989    KPJ18716.1    KQ459591    KPI96941.1    AK401568    BAM18190.1    AGBW02012259    OWR45335.1    AK403188    BAM19617.1    ODYU01001339    SOQ37383.1    CH477769    CH477355    EAT36411.1    EAT42804.1    JXUM01045202    JXUM01045203    KQ561430    KXJ78606.1    ATLV01021395    KE525317    KFB46439.1    GAPW01002609    JAC10989.1    GAPW01002610    GAPW01002608    JAC10988.1    GAPW01002607    JAC10991.1    AXCN02000762    GGFK01001966    MBW35287.1    AXCM01001677    AXCM01001678    AJWK01031589    AJWK01031590    KQ414652    KOC66081.1    AAAB01008964    EAA12344.3    APCN01002467    APCN01002468    CVRI01000037    CRK93354.1    ADMH02002111    ETN58876.1    KA648255    AFP62884.1    GBXI01007511    JAD06781.1    GBXI01004097    JAD10195.1    KQ435908    KOX68992.1    KZ288215    PBC32715.1    CH940661    KRF85540.1    JRES01000096    KNC34131.1    GAMC01000882    JAC05674.1    CM000361    CM002910    EDX03744.1    KMY88120.1    AE014134    BT060448    AAF50980.1    ACN23225.1    CH480820    EDW54271.1    CP012523    ALC40093.1    ALC38951.1    DS233415    EDS29876.1    CH902620    EDV31709.1    GDHF01023991    JAI28323.1    CH954177    EDV57768.1    CH916368    EDW04268.1    EDW71201.1    CM000157    EDW87674.1    KQ764881    OAD54369.1    GDHF01031823    JAI20491.1    CCAG010007078    UFQT01000478    SSX24648.1    OUUW01000004    SPP79270.1    GDHF01002739    JAI49575.1    UFQS01000059    UFQT01000059    SSW98767.1    SSX19153.1    CH379060    EAL33636.1    CH479180    EDW28801.1    JXJN01003395    JXJN01003396    CH963920    EDW78119.1    CH933807    EDW11026.1    DS235418    EEB15599.1    AAZX01003330    KQ976585    KYM79755.1    ADTU01002590    KQ982617    KYQ53816.1    KQ978350    KYM94706.1    KK107796    QOIP01000013    EZA47617.1    RLU15222.1    KQ434792    KZC05490.1    GALX01008586    JAB59880.1    KQ981377    KYN42382.1    KQ971361    EFA08169.2    LJIG01022602    KRT79700.1    GL449385    EFN82866.1    SPP79271.1    BT126859    AEE61821.1    KB631786    ERL86068.1    APGK01056809    KB741277    ENN71138.1    GL435626    EFN72967.1    JTDY01005819    KOB66582.1    KQ416705    KOF95654.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000008820    + More
UP000075881    UP000069940    UP000249989    UP000030765    UP000075900    UP000075885    UP000075886    UP000075920    UP000075901    UP000075884    UP000075883    UP000076408    UP000075880    UP000092461    UP000075902    UP000053825    UP000075882    UP000076407    UP000007062    UP000075840    UP000183832    UP000005203    UP000000673    UP000095301    UP000075903    UP000095300    UP000053105    UP000242457    UP000008792    UP000037069    UP000000304    UP000000803    UP000001292    UP000092553    UP000002320    UP000192221    UP000007801    UP000008711    UP000001070    UP000002282    UP000092444    UP000268350    UP000001819    UP000008744    UP000078200    UP000092443    UP000092460    UP000007798    UP000009192    UP000092445    UP000009046    UP000002358    UP000091820    UP000078540    UP000005205    UP000075809    UP000078542    UP000053097    UP000279307    UP000076502    UP000078541    UP000007266    UP000192223    UP000008237    UP000030742    UP000019118    UP000000311    UP000037510    UP000053454   

PRIDE

H9JHI9    Q9VR28   

Pfam

PF00106   adh_short

Interpro

IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JHI9   A0A2A4KB77   A0A2W1C020   A0A194RRP2   A0A194PU52   I4DJV0   + More
A0A212EV09   I4DNX7   A0A2H1V957   Q16PY7   A0A182KB94   A0A182G6H3   A0A084W895   A0A182RVJ6   A0A023EQU1   A0A023EPN3   A0A182PPJ0   A0A023EQU0   A0A182Q8I1   A0A182W730   A0A182T4E5   A0A2M4A3C5   A0A182NUE1   A0A182M205   A0A182Y087   A0A182JEB9   A0A1B0CW19   A0A182TDH4   A0A0L7R5P1   A0A182L1G5   A0A182WU24   Q7Q403   A0A182HUN6   A0A1J1I0Q6   A0A088A1T2   W5J4M7   T1PJH0   A0A0A1X7E9   A0A182UR22   A0A0A1XGY9   A0A1I8NPC2   A0A0N0BCH2   A0A2A3ELT2   A0A0Q9WX42   A0A0L0CPD9   W8C6X1   B4Q328   Q9VR28   A0A1S4KFV9   B4I3C6   A0A0M3QU59   A0A0M4E9N6   B0XIZ4   A0A1W4UVY0   B3ML91   A0A0K8UPA5   B3N498   B4JD24   B4MDE0   B4NZ10   A0A310SLE3   A0A0K8U1U9   A0A1B0G671   A0A336MF17   A0A3B0JUW5   A0A0K8WFD1   A0A336K2S4   Q29MQ7   B4G8X1   A0A1A9UXB0   A0A1A9Y4P0   A0A1B0ATM4   B4N1A9   B4KFR1   A0A1A9ZN68   E0VQE3   K7ITC1   A0A1A9WBJ4   A0A195B671   A0A158NT41   A0A151X0D3   A0A195C3E0   A0A026VV64   A0A154P2Y2   V5FQF8   A0A151JZR9   D6WW87   A0A1W4WER5   A0A0T6AXI0   E2BNA4   A0A3B0K2N7   J3JUE6   U4U187   N6T0W3   E2A0R4   A0A0L7KTJ2   A0A0L8I2T1  

PDB

1YB1     E-value=1.79301e-15,     Score=195

KEGG

101745197    K15734 all-trans-retinol dehydrogenase (NAD+) [EC:1.1.1.105] | (RefSeq) short-chain dehydrogenase/re

GO

GO:0016021   GO:0005811   GO:0016491   GO:0004745   GO:0004386   GO:0004316   GO:0102132   GO:0102131  

Length:

146

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.86986

Exp number, first 60 AAs:

0.60243

Total prob of N-in:

0.18991

outside

1  -  146

 

 

Pi

319.467568

Theta

156.258936

Tajima's D

3.076002

CLR

0.160432

CSRT

0.981200939953002

Interpretation

Uncertain