SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01370  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008900
Annotation
PREDICTED:_chitinase_domain-containing_protein_1_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 1.868
 

Sequence

CDS
ATGACCAAAATTTTAATTTTGAATCAAAATGAAAAAAATGCTCTAGCAAAATATGCTAAGATATATGATTTGCTAGTGGAGCCATGTGGCATTTTCAATAGCCAAGAGCGCCCATATCTTGCTGCATCTCCTGATGGTTATGTTACGCCGTGGAACAACAAAGGTTACGACATAGCGAAGATATGGGCACCAAAATTCAACTACATCTCACCAGTATGGCTACAAATAAAAAGACAGTCACCAAATATCTACATCATAACTGGGCTCCATGATGTAGACCATGCTTGGATGAAATCTGTGAGACAGAAGGGTGCAAGGAACAATATTAAAATTCTTCCAAGAATTATCTTTGAGAACTGGCAGGGATCAGATCTAAAGGCATTTTTTATGGAACCGACATCACTAACAGAACAGAAAGCTTTTATTGAGGAAATAAAAAAAGCTTGCAAGCAATGGAAATTTGATGGTGTTGTGCTTGAGATGCTCTCTCAGATTGGAAAGTATGCTGACAAGTCTGTTAAGTTCATACAACAATTTGGTTTGGAAATGACTGAAAATGGTTTGAGTTTGATTTTAGTCTATCCACCGTATCGAGGCTTCCCTACAGATGAATTCTATATACAGGCATTTAATGATATTTATCCTTATGTAGAAGCTGTTTCTGTAATGACATATGATTTCTCTAATCCACAAAAGCCTGGTCCCAATGCCCCTTTGTACTGGATGAAGTTATGTCTAGAGAAACTCATTGATGGTGATGAAAATCCATCTAAAAAATCAAAAATATTACTTGGTTTGAATTTTTATGGTAACTCCTATACTGTGAATGGTGGTGGGCCTATTGTGGGTACTGAATACATAGAAACTCTCAAGAATGCCAAAAATAACCAAGTACTTACTTATAATAATAATACTGCAGAGAATTATATTGAAATCAGAAGTTTACAAGGTTCAAAAAAAATATTTTACCCAACATTGTACTCTATACAAAAGAGGCTAGAACTTGCTGAGGAGTATGGAGTCGGTGTTGCCATATGGGAAATTGGACAAGGGCTTGATTACTTCTACGATTTGTTTTGA
Protein
MTKILILNQNEKNALAKYAKIYDLLVEPCGIFNSQERPYLAASPDGYVTPWNNKGYDIAKIWAPKFNYISPVWLQIKRQSPNIYIITGLHDVDHAWMKSVRQKGARNNIKILPRIIFENWQGSDLKAFFMEPTSLTEQKAFIEEIKKACKQWKFDGVVLEMLSQIGKYADKSVKFIQQFGLEMTENGLSLILVYPPYRGFPTDEFYIQAFNDIYPYVEAVSVMTYDFSNPQKPGPNAPLYWMKLCLEKLIDGDENPSKKSKILLGLNFYGNSYTVNGGGPIVGTEYIETLKNAKNNQVLTYNNNTAENYIEIRSLQGSKKIFYPTLYSIQKRLELAEEYGVGVAIWEIGQGLDYFYDLF

Summary

Similarity
Belongs to the glycosyl hydrolase 18 family.
EMBL
BABH01012602    NWSH01000002    PCG81055.1    KZ149894    PZC78858.1    AGBW02012259    + More
OWR45334.1    KQ459989    KPJ18717.1    KQ459591    KPI96942.1    ODYU01006435    SOQ48276.1    JTDY01005466    KOB66972.1    DS235418    EEB15598.1    KK852425    KDR24144.1    NEVH01001403    PNF42667.1    PYGN01000804    PSN40598.1    GFDL01010799    JAV24246.1    AAAB01008964    APCN01002468    EAA12357.2    ATLV01021395    KE525317    KFB46440.1    LJIJ01000725    ODM94986.1    DS233415    EDS29877.1    GEZM01095865    JAV55294.1    GANO01000456    JAB59415.1    JXUM01045203    KQ561430    KXJ78607.1    AXCM01001677    AXCN02000762    JXUM01030530    JXUM01030531    JXUM01030532    KQ560888    KXJ80469.1    LNIX01000001    OXA63418.1    GGFJ01006067    MBW55208.1    GAPW01001845    JAC11753.1    ADMH02002111    ETN58877.1    KB631786    ERL86069.1    CP012523    ALC38211.1    GDIP01203790    JAJ19612.1    GDIP01094659    JAM09056.1    GGFK01006463    MBW39784.1    GDIP01232534    GDIP01203788    JAI90867.1    GDIP01161694    JAJ61708.1    GDIQ01203665    JAK48060.1    GDIQ01042319    JAN52418.1    GDIQ01039525    JAN55212.1    GDIP01094658    JAM09057.1    GEGO01000851    JAR94553.1    GDIQ01042318    JAN52419.1    CH477355    EAT42806.1    APGK01056809    KB741277    ENN71137.1    CH379060    EAL33681.5    CH479180    EDW28854.1    GDIP01044603    JAM59112.1    OUUW01000004    SPP79775.1    GDIP01107549    GDIP01102048    JAL96165.1    GDIP01232533    GDIP01195235    GDIP01059602    JAI90868.1    GDIP01063006    JAM40709.1    GDIP01218536    GDIP01107547    JAL96167.1    CH963857    EDW75841.1    GDIP01064162    JAM39553.1    GDIP01161693    JAJ61709.1    CH933807    EDW11164.1    GDIP01195236    GDIP01085454    JAM18261.1    CH940649    EDW64107.1    LRGB01003124    KZS04185.1    BT127126    AEE62088.1    CH916368    EDW03921.1    GDIP01216631    GDIP01216630    JAJ06771.1    GDIP01102002    JAM01713.1    GDIP01202030    JAJ21372.1    GFAA01001310    JAU02125.1    GDIP01059603    JAM44112.1    GDIP01107548    JAL96166.1    GDIQ01018190    JAN76547.1    GDIP01059604    JAM44111.1    KU739361    ARA90538.1    JRES01000736    KNC28881.1    GDIP01064161    JAM39554.1    GDIP01232535    GDIP01228323    GDIP01226132    GDIP01191980    JAJ31422.1    GDIP01161695    JAJ61707.1    GDIQ01131437    JAL20289.1    CH477769    EAT36412.1    GDIP01202029    JAJ21373.1    GAMC01020645    JAB85910.1    GL732643    EFX69014.1    CH902620    EDV31282.1    LJIJ01005937    ODM87187.1    GDIP01112603    JAL91111.1    GBBM01003467    JAC31951.1    GFAC01001376    JAT97812.1    GBBL01002675    JAC24645.1   
Pfam
PF00704   Glyco_hydro_18
Interpro
IPR011583   Chitinase_II        + More
IPR001223   Glyco_hydro18_cat       
IPR017853   Glycoside_hydrolase_SF       
IPR029070   Chitinase_insertion_sf       
SUPFAM
SSF51445   SSF51445       
Gene 3D
PDB
3BXW     E-value=1.58271e-67,     Score=650

Ontologies

Topology

Length:
359
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03019
Exp number, first 60 AAs:
0.00049
Total prob of N-in:
0.01838
outside
1  -  359
 
 

Population Genetic Test Statistics

Pi
274.523465
Theta
185.197713
Tajima's D
1.611958
CLR
0.033904
CSRT
0.809809509524524
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号