Gene

KWMTBOMO01368  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008899

Annotation

U6_snRNA-associated_Sm-like_protein_[Bombyx_mori]

Location

Bomo_Chr3(+):9197611-9198766      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.145

CDS

ATGGCATCCAAAGAAGGAGGTGAAAAGTCAAAAGGCAGCCAAGTAACAGGAGATAATAAAGAAAAGAGAAGGAAAGAATCTATATTAGATCTTAGCAAATACTTGGAGAAAAGCATCCGTGTAAAATTCGCAGGAGGGCGTGAAGCGGCGGGAATTCTTAAAGGCTATGATCCCCTTCTAAACCTTGTGCTAGACAATACTACGGAGTTTCTAAGAGATCCTGATGACCCATACAAACTTTTGGATGACACAAGAGCTTTAGGTCTTGTTGTTTGCCGAGGTACATCAGTTGTTTTAATATGTCCAATGGATGGTATGGAAGCAATACCAAACCCATTTATTAACCAGGAAGGATAA

Protein

MASKEGGEKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFINQEG

Uniprot

Q2F679   I4DMY4   A0A194PW06   A0A194RMS0   A0A2W1C162   A0A2A4KAX7   + More
A0A2H1W5F3   A0A0L7L1U6   A0A212EV14   S4PWT1   A0A1Y1LJ44   D6WYZ2   A0A0T6ASW6   J3JWJ2   A0A232FN75   A0A0B4J2R2   E2C5L2   A0A1W4WYM6   T1DTS7   A0A026WZ90   A0A2P8Y4M3   A0A2M4AXN7   A0A2M4AXN0   A0A087ZW80   A0A182NUD8   E0VGP8   A0A182PPI7   A0A1B6L573   U5EXX0   A0A2A3ELA0   A0A0M9A8D1   A0A182JRT4   A0A151JNB8   A0A2J7QKF3   A0A2M3ZD71   A0A182QZG3   A0A182TI55   A0A182IUW6   W5J7U6   A0A2M4C3A1   A0A182HUN9   Q7Q400   A0A2M4AXI3   A0A067QVG4   A0A2M4C384   A0A182WU27   A0A182RVJ3   A0A182Y075   A0A182VER4   A0A182F4V4   A0A1B6DTA8   A0A0J7L673   A0A158NJC8   E2AJ62   A0A182LUM1   A0A154PTD1   A0A182W733   A0A151JVK0   F4WKN8   T1IXR9   A0A084W899   A0A131XEP7   A0A1E1WYK5   A0A224ZB28   A0A131YER3   A0A1S3GZK6   A0A182GAZ1   L7M0G2   A0A182H9D3   G3MN46   A0A023GH01   A0A0C9QYZ0   A0A023FHB3   A0A023FWB8   A0A1B6F600   Q16KA7   C3ZFI7   A0A1S4FY17   A0A1L8DHJ3   B7PH70   V5IIG7   A0A1Q3F4T9   B0WD98   A0A0K8TLX1   A0A1L8DGQ9   A0A1L8DGE2   A0A224XQ35   A0A0V0GDH9   A0A023F9N1   A0A069DNU5   A0A1J1HZ21   A0A1B6HWL9   A0A0L8FQH4   A0A087SWI1   A0A2R5LG78   A0A293LQ02   R4G3Y9   A0A0K8WKK7   A0A336MGE6   W8C199  

Pubmed

19121390    22651552    26354079    28756777    26227816    22118469    + More
23622113    28004739    18362917    19820115    22516182    23537049    28648823    20075255    20798317    24508170    30249741    29403074    20566863    20920257    23761445    12364791    14747013    17210077    24845553    25244985    21347285    21719571    24438588    28049606    28503490    28797301    26830274    26483478    25576852    22216098    26131772    17510324    18563158    25765539    26369729    25474469    26334808    24495485   

EMBL

BABH01012603    DQ311193    ABD36138.1    AK402652    BAM19274.1    KQ459591    + More
KPI96944.1    KQ459989    KPJ18719.1    KZ149894    PZC78860.1    NWSH01000002    PCG81058.1    ODYU01006435    SOQ48278.1    JTDY01003487    KOB69478.1    AGBW02012259    OWR45332.1    GAIX01006248    JAA86312.1    GEZM01055837    GEZM01055836    JAV72911.1    KQ971363    EFA09312.2    LJIG01022899    KRT78164.1    APGK01056846    BT127610    KB741277    KB630186    KB632028    KB632155    AEE62572.1    ENN71164.1    ERL83461.1    ERL88125.1    ERL89223.1    NNAY01000006    OXU32122.1    AAZX01003330    GL452770    EFN76825.1    GAMD01000774    JAB00817.1    KK107078    QOIP01000011    EZA60464.1    RLU17140.1    PYGN01000938    PSN39200.1    GGFK01012210    MBW45531.1    GGFK01012209    MBW45530.1    DS235150    EEB12554.1    GEBQ01021140    JAT18837.1    GANO01002320    JAB57551.1    KZ288215    PBC32487.1    KQ435713    KOX79307.1    KQ978858    KYN27923.1    NEVH01013262    PNF29070.1    GGFM01005688    MBW26439.1    AXCN02000762    ADMH02002111    ETN58879.1    GGFJ01010642    MBW59783.1    APCN01002468    AAAB01008964    EAA12576.3    GGFK01012186    MBW45507.1    KK852902    KDR14040.1    GGFJ01010613    MBW59754.1    GEDC01008386    JAS28912.1    LBMM01000596    KMQ97994.1    ADTU01017551    GL439967    EFN66502.1    AXCM01009005    KQ435078    KZC14440.1    KQ981703    KYN37445.1    GL888206    EGI65130.1    JH431661    ATLV01021396    KE525317    KFB46443.1    GEFH01002597    JAP65984.1    GFAC01007126    JAT92062.1    GFPF01013028    MAA24174.1    GEDV01011160    JAP77397.1    JXUM01051695    KQ561701    KXJ77763.1    GACK01007208    JAA57826.1    JXUM01030539    KQ560888    KXJ80471.1    JO843297    AEO34914.1    GBBM01003156    GBBM01003155    JAC32263.1    GBZX01002780    JAG89960.1    GBBK01004399    JAC20083.1    GBBL01002370    JAC24950.1    GECZ01024258    GECZ01003960    JAS45511.1    JAS65809.1    CH477970    EAT34724.1    GG666613    EEN48741.1    GFDF01008239    JAV05845.1    ABJB010285301    DS711462    EEC05942.1    GADI01002673    GANP01003217    JAA71135.1    JAB81251.1    GFDL01012498    JAV22547.1    DS231895    EDS44333.1    GDAI01002231    JAI15372.1    GFDF01008560    JAV05524.1    GFDF01008561    JAV05523.1    GFTR01001819    JAW14607.1    GECL01000160    JAP05964.1    GBBI01000612    JAC18100.1    GBGD01003558    JAC85331.1    CVRI01000037    CRK93351.1    GECU01028681    GECU01014967    JAS79025.1    JAS92739.1    KQ427554    KOF66939.1    KK112265    KFM57220.1    GGLE01004211    MBY08337.1    GFWV01005211    MAA29941.1    ACPB03007356    GAHY01001251    JAA76259.1    GDHF01002526    GDHF01000638    JAI49788.1    JAI51676.1    UFQS01001121    UFQT01001121    UFQT01001734    SSX09109.1    SSX29020.1    SSX31560.1    GAMC01003629    GAMC01003627    JAC02929.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000037510    UP000007151    + More
UP000007266    UP000019118    UP000030742    UP000215335    UP000002358    UP000008237    UP000192223    UP000053097    UP000279307    UP000245037    UP000005203    UP000075884    UP000009046    UP000075885    UP000242457    UP000053105    UP000075881    UP000078492    UP000235965    UP000075886    UP000075902    UP000075880    UP000000673    UP000075840    UP000007062    UP000027135    UP000076407    UP000075900    UP000076408    UP000075903    UP000069272    UP000036403    UP000005205    UP000000311    UP000075883    UP000076502    UP000075920    UP000078541    UP000007755    UP000030765    UP000085678    UP000069940    UP000249989    UP000008820    UP000001554    UP000001555    UP000002320    UP000183832    UP000053454    UP000054359    UP000015103   

PRIDE

Q2F679   

Pfam

PF01423   LSM

Interpro

IPR010920   LSM_dom_sf        + More
IPR001163   LSM_dom_euk/arc       
IPR017132   Lsm7       

SUPFAM

SSF50182   SSF50182       

CDD

cd01729  LSm7

ProteinModelPortal

Q2F679   I4DMY4   A0A194PW06   A0A194RMS0   A0A2W1C162   A0A2A4KAX7   + More
A0A2H1W5F3   A0A0L7L1U6   A0A212EV14   S4PWT1   A0A1Y1LJ44   D6WYZ2   A0A0T6ASW6   J3JWJ2   A0A232FN75   A0A0B4J2R2   E2C5L2   A0A1W4WYM6   T1DTS7   A0A026WZ90   A0A2P8Y4M3   A0A2M4AXN7   A0A2M4AXN0   A0A087ZW80   A0A182NUD8   E0VGP8   A0A182PPI7   A0A1B6L573   U5EXX0   A0A2A3ELA0   A0A0M9A8D1   A0A182JRT4   A0A151JNB8   A0A2J7QKF3   A0A2M3ZD71   A0A182QZG3   A0A182TI55   A0A182IUW6   W5J7U6   A0A2M4C3A1   A0A182HUN9   Q7Q400   A0A2M4AXI3   A0A067QVG4   A0A2M4C384   A0A182WU27   A0A182RVJ3   A0A182Y075   A0A182VER4   A0A182F4V4   A0A1B6DTA8   A0A0J7L673   A0A158NJC8   E2AJ62   A0A182LUM1   A0A154PTD1   A0A182W733   A0A151JVK0   F4WKN8   T1IXR9   A0A084W899   A0A131XEP7   A0A1E1WYK5   A0A224ZB28   A0A131YER3   A0A1S3GZK6   A0A182GAZ1   L7M0G2   A0A182H9D3   G3MN46   A0A023GH01   A0A0C9QYZ0   A0A023FHB3   A0A023FWB8   A0A1B6F600   Q16KA7   C3ZFI7   A0A1S4FY17   A0A1L8DHJ3   B7PH70   V5IIG7   A0A1Q3F4T9   B0WD98   A0A0K8TLX1   A0A1L8DGQ9   A0A1L8DGE2   A0A224XQ35   A0A0V0GDH9   A0A023F9N1   A0A069DNU5   A0A1J1HZ21   A0A1B6HWL9   A0A0L8FQH4   A0A087SWI1   A0A2R5LG78   A0A293LQ02   R4G3Y9   A0A0K8WKK7   A0A336MGE6   W8C199  

PDB

6QX9     E-value=1.26875e-40,     Score=411

KEGG

692825    K12626 U6 snRNA-associated Sm-like protein LSm7 | (RefSeq) U6 snRNA-associated Sm-like protein

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)
03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000956   GO:0000398   GO:0005688   GO:0071013   GO:0005689   GO:0071004   GO:1990726   GO:0003723   GO:0005732   GO:0008026   GO:0016820   GO:0016042   GO:0005634   GO:0006334   GO:0003779   GO:0016021  

Length:

118

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.16094

Exp number, first 60 AAs:

0.00056

Total prob of N-in:

0.20993

outside

1  -  118

 

 

Pi

349.370631

Theta

237.963275

Tajima's D

1.569789

CLR

0.397877

CSRT

0.809109544522774

Interpretation

Uncertain