Silkworm Genome Informatics Database

Gene

KWMTBOMO01366 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008989

Annotation

NIK-and_IKBKB-binding_protein_[Operophtera_brumata]

Location

Bomo_Chr3(-):9175534-9180160 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Nuclear Reliability : 3.194

CDS

ATGATGGATATAGTTCGGATGTCACCGCTGAACTGGGAGGTTAGCATTAACAGCCAGTGCATAAAGCCCCAAGAGGAGTTCAACTGTACGGCGGGCGAGTGCCTCTCGTTAGGCGTGGCTGTATGGAATCACCTCAGCCGGCCGCTGCACAAACTATGCCTGTCTGTACAGTTCTATCAGGATTATAACAACGGCGTTTTCAGTTACAAACTCGACAATAGGGTTGCTACTGCCGGAAATAATAAGGTGGTACTAACAACACTGCGGGAGTCAGCTAAAGCTTACCACGAGTGTACTGTGGTTTTTTTGACGCCCGGAGAATATAAAATTGATATCCAATGTTCTACAACTGAACCGATTTTAGAAGACTCCACTGTACTGAAAGAACCCGAGCAACCATCCATCATACAGCCGTGTGCGAGTGAAATAAGTCACGTTTGGCGTTTTATACCGCCCGTAGCTATAAATGTAACTTTCCACCGATGCCCATACAATTCTGAAATGAGTAATAAATGGCTCAGAGTACTAAAACAAAGATGCACTGCATTTGATTCTGTAGATAGTAAAATCTGTTCAAAACATTTTGAATTAAAGTATTTTGATGCACAAAAGAAACTGAAAGAAAATGCAGTGCCAACGTTATTTTCTTCTGCTAGTCACTCACTGTCACTGAGGTCAATTGGAAAGTCTGACAGTGGAAAAACGAAGATTGAAAAAATATTAAATAGAATGACACAAGCAGACCTGACTGCCGATATCAAGCTAAATTTGGCTCATTTAAAAGAACCAATGCATTTAGATAGTTTTGTTACAGATGATTTAAAATGTAAATCTGATGCACCTAATGCAGCTAACTTGTGGCTTATGATTAAGAAGCAAGAACATCTCAATACAAGACTTATGGACCTAGTGGTACAAACTAAAAAACATGTGGAGATACTGCAGAAAAGCATGGAAGAATCGAGACTTGTTAAAAAAGAACAAGAACAAAATATAGAATCATTAAAATACATTGTTAAATGTCTTCAAGAAAAACAAACCACTCTTGAAGAGCAGATTGAAATATTGACTGCAGTAGAATCAAGATAA

Protein

MMDIVRMSPLNWEVSINSQCIKPQEEFNCTAGECLSLGVAVWNHLSRPLHKLCLSVQFYQDYNNGVFSYKLDNRVATAGNNKVVLTTLRESAKAYHECTVVFLTPGEYKIDIQCSTTEPILEDSTVLKEPEQPSIIQPCASEISHVWRFIPPVAINVTFHRCPYNSEMSNKWLRVLKQRCTAFDSVDSKICSKHFELKYFDAQKKLKENAVPTLFSSASHSLSLRSIGKSDSGKTKIEKILNRMTQADLTADIKLNLAHLKEPMHLDSFVTDDLKCKSDAPNAANLWLMIKKQEHLNTRLMDLVVQTKKHVEILQKSMEESRLVKKEQEQNIESLKYIVKCLQEKQTTLEEQIEILTAVESR

Uniprot

A0A0L7L2C2 A0A2W1BWZ6 A0A2H1W3U0

Pubmed

26227816 28756777

EMBL

JTDY01003487 KOB69481.1 KZ149894 PZC78861.1 ODYU01006122 SOQ47697.1 + More

Proteomes

UP000037510

Pfam

PF05485 THAP + More
PF08626 TRAPPC9-Trs120

Interpro

IPR013935   TRAPP_II_complex_Trs120        + More
IPR006612   THAP_Znf
IPR038441   THAP_Znf_sf

Gene 3D

3.30.40.180

ProteinModelPortal

A0A0L7L2C2 A0A2W1BWZ6 A0A2H1W3U0

PDB

2D8R E-value=6.49757e-05, Score=110

KEGG

101745979 no KO assigned | (RefSeq) uncharacterized LOC101745979

GO

GO:0003677 GO:0003676 GO:0003678 GO:0006281 GO:0008026 GO:0016820 GO:0016042 GO:0005634 GO:0006334 GO:0003779 GO:0016021

PANTHER

PTHR21512

Length:

362

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00134

Exp number, first 60 AAs:

0.00096

Total prob of N-in:

0.00708

outside

1 - 362

Pi

214.70008

Theta

191.272872

Tajima's D

1.229872

CLR

2.506857

CSRT

0.72406379681016

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics