Gene

KWMTBOMO01365

Pre Gene Modal

BGIBMGA008898

Annotation

PREDICTED:_ATP-dependent_DNA_helicase_PIF1_isoform_X2_[Papilio_xuthus]

Location

Bomo_Chr3(+):9172281-9175175      View in EpiBrowser

Full name

ATP-dependent DNA helicase PIF1       + More
ATP-dependent DNA helicase      

Alternative Name

DNA repair and recombination helicase PIF1

Location in the cell

Mitochondrial   Reliability : 3.238

CDS

ATGTTTTTAGAAGTGACATCCGAAAAACATGCCGCCACTAAATTGGCTCTTAAAAGTTTCAATGTTTTCAAAAAGTTTATGGCTGAAGGTAAAGCAAGTATTAAGTTCCAGGAAGCTAATTGTACAATATTTATTTCAAATGCACCTCCTACAAATTTGGTAATGTTTCTTCGAACTATATTTGTTAAGATGACCAGTGATGAAGAGCAAAAAGCAAATAAAACTCCATCAAAACAGTCAATGAGGGCAAAGCTGTTAAGTGGTAAATCCCAATCATTTGATGAAATAAGTCCAGTTACAGTTGCCGACATTCATATTGCGAAAAGTAAAATTTCAAAATCTACAATCACAACACCATCACCGCCTTCAAAGAAACGAACAGGAAAAAGTTTCTTATTAAAAAGGATTGTGGCAGCTCTACCTCCTGATGTAACGATGCCCACTGCATCCACTGGTGTCGCAGCTTGTCACATTGGTGGTACCACTCTTCATGCTTTTGCTGGCATAGGTGATGGTAGTGGGTCTATCGAAAATTTATGTGAAAGAGCTACTAAAATACCATTGGTAGCACAAAAATGGAGAAAATGTAAACACCTTATTATAGATGAGATATCAATGGTCGATGGAATATTTTTTGAGGTACATAGACAAACAGATCAAGAATTTATTTCGATTCTCAATAGTATCAGAATTGGTCGTGTTACTAAAGAAATCAGCAACAGATTAACAAGAACAGCAAGGCAGAAAATTGAGGCTGATGGCATTTTAGCAACTAGATTATGCTCACATACTAATGACTCAAAAATGATAAATGAGTCAAAATTGATAGCTTTGGATGGAGAGGGAAAATTATTTACATCACAAGACAGTGATAATGCTACTACATTACTAGATATGCAAACTATTGCCCCTTCTAAACTCATGTTAAAAATTGGAGCACAAGTAATGTTATTAAAAAATATTAATGTAAATTCAGGTTTAGTTAATGGAGCCAGAGGAATTGTTGTTCGATTTGAAGAAGGATTCCCTGTTGTTAGATTTAAAAACAAAAAAGAATACATAGCCAGAACAGAACGCTGGTATGTCAAAAATTCGAATGGTACATTATTATGTCGCAGGCAAGTTCCGTTGTCTTTAGCGTGGGCTTTTTCAATACATAAGTCACAAGGATTAACTTTAGACTGTGTTGAGATGTCACTGTCGAAAATATTTGAAGCTGGACAAGCTTATGTTGCATTGAGTAGAGCACAAAGCTTAGACAGCCTTCGTGTATTAGATTTTGATTCCAGACATGTATGGGCAAACCCTGATGTTCTAGAATTTTATCAAAGATTCAGACGAAGATTGCAACAAATGGAGATAGTACCACTTGGTAGACCATTACCTGAAAAAGCAACTAAGAAGTTGAAACTTAGAGATATTTTAGAGAAGCAATTAAGACAGAAATAG

Protein

MFLEVTSEKHAATKLALKSFNVFKKFMAEGKASIKFQEANCTIFISNAPPTNLVMFLRTIFVKMTSDEEQKANKTPSKQSMRAKLLSGKSQSFDEISPVTVADIHIAKSKISKSTITTPSPPSKKRTGKSFLLKRIVAALPPDVTMPTASTGVAACHIGGTTLHAFAGIGDGSGSIENLCERATKIPLVAQKWRKCKHLIIDEISMVDGIFFEVHRQTDQEFISILNSIRIGRVTKEISNRLTRTARQKIEADGILATRLCSHTNDSKMINESKLIALDGEGKLFTSQDSDNATTLLDMQTIAPSKLMLKIGAQVMLLKNINVNSGLVNGARGIVVRFEEGFPVVRFKNKKEYIARTERWYVKNSNGTLLCRRQVPLSLAWAFSIHKSQGLTLDCVEMSLSKIFEAGQAYVALSRAQSLDSLRVLDFDSRHVWANPDVLEFYQRFRRRLQQMEIVPLGRPLPEKATKKLKLRDILEKQLRQK

Description

DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Cofactor

Mg(2+)

Subunit

Monomer.

Similarity

Belongs to the helicase family. PIF1 subfamily.
Belongs to the helicase family.

Uniprot

A0A139WDM8   A0A1Y1NF23   A0A182VFF3   J9HF21   A0A195FX53   F4WUX5   + More
A0A2J7QHS0   A0A232EWR3   A0A158P0R4   A0A0J7KQF7   A0A151WWD1   A0A026WGB1   A0A3L8E2G9   A0A0M9AAC7   A0A151IXN3   T1GYR2   A0A195CXI2   A0A088ASR6   A0A0T6AVX3   E2AZP8   E2C9N0   A0A154PH27   A0A0L7R6X4   A0A1A9ZDD6   A0A1W4XP84   K7J367   A0A2A3E850   A0A182GKW8   A0A1J1I261   A0A2H8TMV8   J9JNH6   A0A0P7YNM5   A0A1A9ZRW9   A0A2S2PYI0   A0A2R7VX24   A0A3M0KBW3   A0A2S2ND12   H0Z9L6   A0A3P8YUH4   A0A3L8SR79   K1PV98   A0A226PIZ2   A0A0Q3RE16   A0A218VFJ6   A0A226MFI1   U3JT03   A0A099ZUG8   A0A3B3ZCX6   A0A210R047   T1J1X4   A0A2P4TED8  

EC Number

3.6.4.12

Pubmed

18362917    19820115    28004739    17510324    21719571    28648823    + More
21347285    24508170    30249741    20798317    20075255    26483478    20360741    25069045    30282656    22992520    24621616    25463417    28812685   

EMBL

KQ971361    KYB25955.1    GEZM01003832    JAV96534.1    CH477229    EJY57402.1    + More
KQ981200    KYN45018.1    GL888378    EGI61989.1    NEVH01013973    PNF28119.1    NNAY01001827    OXU22790.1    ADTU01005769    LBMM01004371    KMQ92494.1    KQ982691    KYQ52047.1    KK107260    EZA54089.1    QOIP01000001    RLU26930.1    KQ435700    KOX80450.1    KQ980819    KYN12681.1    CAQQ02375316    KQ977141    KYN05356.1    LJIG01022674    KRT79311.1    GL444275    EFN61107.1    GL453868    EFN75369.1    KQ434890    KZC10480.1    KQ414646    KOC66579.1    KZ288334    PBC27878.1    JXUM01070933    KQ562635    KXJ75449.1    CVRI01000037    CRK93676.1    GFXV01003515    MBW15320.1    ABLF02025680    JARO02003963    KPP69424.1    GGMS01001276    MBY70479.1    KK854143    PTY12057.1    QRBI01000117    RMC08560.1    GGMR01002389    MBY15008.1    ABQF01041509    ABQF01041510    ABQF01041511    QUSF01000010    RLW06011.1    JH816145    EKC25648.1    AWGT02000057    OXB80076.1    LMAW01001336    KQK83793.1    MUZQ01000002    OWK64451.1    MCFN01000997    OXB54052.1    AGTO01010966    KL898352    KGL85436.1    NEDP02001046    OWF54393.1    JH431790    PPHD01001327    POI34740.1   

Proteomes

UP000007266    UP000075903    UP000008820    UP000078541    UP000007755    UP000235965    + More
UP000215335    UP000005205    UP000036403    UP000075809    UP000053097    UP000279307    UP000053105    UP000078492    UP000015102    UP000078542    UP000005203    UP000000311    UP000008237    UP000076502    UP000053825    UP000092445    UP000192223    UP000002358    UP000242457    UP000069940    UP000249989    UP000183832    UP000007819    UP000034805    UP000269221    UP000007754    UP000265140    UP000276834    UP000005408    UP000198419    UP000051836    UP000197619    UP000198323    UP000016665    UP000053641    UP000261520    UP000242188   

Pfam

PF08626   TRAPPC9-Trs120        + More
PF05970   PIF1
PF02689   Herpes_Helicase

Interpro

IPR003593   AAA+_ATPase        + More
IPR010285   DNA_helicase_pif1-like       
IPR013935   TRAPP_II_complex_Trs120       
IPR027417   P-loop_NTPase       
IPR003840   DNA_helicase       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

A0A139WDM8   A0A1Y1NF23   A0A182VFF3   J9HF21   A0A195FX53   F4WUX5   + More
A0A2J7QHS0   A0A232EWR3   A0A158P0R4   A0A0J7KQF7   A0A151WWD1   A0A026WGB1   A0A3L8E2G9   A0A0M9AAC7   A0A151IXN3   T1GYR2   A0A195CXI2   A0A088ASR6   A0A0T6AVX3   E2AZP8   E2C9N0   A0A154PH27   A0A0L7R6X4   A0A1A9ZDD6   A0A1W4XP84   K7J367   A0A2A3E850   A0A182GKW8   A0A1J1I261   A0A2H8TMV8   J9JNH6   A0A0P7YNM5   A0A1A9ZRW9   A0A2S2PYI0   A0A2R7VX24   A0A3M0KBW3   A0A2S2ND12   H0Z9L6   A0A3P8YUH4   A0A3L8SR79   K1PV98   A0A226PIZ2   A0A0Q3RE16   A0A218VFJ6   A0A226MFI1   U3JT03   A0A099ZUG8   A0A3B3ZCX6   A0A210R047   T1J1X4   A0A2P4TED8  

PDB

5FHH     E-value=3.21987e-76,     Score=726

KEGG

101745736    K15255 ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] | (RefSeq) ATP-dependent DNA helicase PIF1

GO

GO:0005739   GO:0005634   GO:0003677   GO:0000002   GO:0006281   GO:0005802   GO:0005524   GO:0000723   GO:0006310   GO:0043141   GO:0003678   GO:0042162   GO:0033682   GO:0000287   GO:0017116   GO:0000784   GO:0032211   GO:0051974   GO:0008026   GO:0016820   GO:0016042   GO:0006334   GO:0003779   GO:0016021  

PANTHER

PTHR21512  

Subcellular location

Nucleus  
Mitochondrion  

Length:

482

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11683

Exp number, first 60 AAs:

0.09751

Total prob of N-in:

0.00736

outside

1  -  482

 

 

Pi

253.837075

Theta

199.703053

Tajima's D

0.848831

CLR

0

CSRT

0.613769311534423

Interpretation

Uncertain