SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01363
Pre Gene Modal
BGIBMGA008990
Annotation
twist_protein_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.768
 

Sequence

CDS
ATGAATTACGATAACTGTGACAATAGAACTGTGCTCATCAAACGCGAGCAAGACCTTGAATATCCCGAGGACGAAGACCATTCGTACTATGGATATGCGCCGGTTGAAGTAAATCGACAAGCTGCTACCGGGTTTGTGCCTTCATCGCCTGCTCATCTCATGGATCTTAGTAACGGTCCCGACCGCGCTCAGCAGCCTCCCTGGGCTACGAACGAAATGTTTGGCAACGAAGATCGCGATTATCAACAAATCCCATTTCCTGCTTACGATCCTCAGTTTCAACAAAGACAAGTACCGCGACACGTATATTATGAGGATTCGAATTCACAAGACGGAATTTCAAACTACTATGAAACTGGTGATATGCCGAAGCTAGTTGAAATGTACAGGGCCGATGAGCGACGAGATGAATCAGAGGAACAGCGAAGAAGAAAGAAGCCTTCGAAATCAGCGCGCAAGAAAACACAGTCTTATGAAGAAATGCAGATACAGCGAGTAATGGCAAATGTTCGGGAACGTCAGAGAACCCAAAGTTTGAATGAGGCTTTCGCGAGCTTAAGGCAAATAATTCCTTCCCTTCCGAGCGACAAATTATCCAAGATACAGACCCTGCAATTGGCAACGCAATACATTGAGTTTTTGTATCAAATACTGTCGAACAGCGAATCAACAGGGGCCAGTGACAGCAGCAGCGACACCAGCAGCGATCACGGAAAGTATTTGGCTCAAGACAAACTGAGCTATGCTTTCTCTGTATGGAGGATGGAAGGAGAGTGGACGACCAACGGACAATCGTGA
Protein
MNYDNCDNRTVLIKREQDLEYPEDEDHSYYGYAPVEVNRQAATGFVPSSPAHLMDLSNGPDRAQQPPWATNEMFGNEDRDYQQIPFPAYDPQFQQRQVPRHVYYEDSNSQDGISNYYETGDMPKLVEMYRADERRDESEEQRRRKKPSKSARKKTQSYEEMQIQRVMANVRERQRTQSLNEAFASLRQIIPSLPSDKLSKIQTLQLATQYIEFLYQILSNSESTGASDSSSDTSSDHGKYLAQDKLSYAFSVWRMEGEWTTNGQS

Summary

Pfam
PF00010   HLH
Interpro
IPR011598   bHLH_dom        + More
IPR015789   Twist-related       
IPR036638   HLH_DNA-bd_sf       
SUPFAM
SSF47459   SSF47459       
Gene 3D
PDB
2YPB     E-value=1.48481e-07,     Score=131

Ontologies

Topology

Length:
265
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00034
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.31147
outside
1  -  265
 
 

Population Genetic Test Statistics

Pi
226.333272
Theta
210.598068
Tajima's D
0.23523
CLR
0.048399
CSRT
0.435078246087696
Interpretation
Uncertain
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