SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01359
Pre Gene Modal
BGIBMGA008896
Annotation
PREDICTED:_SPRY_domain-containing_SOCS_box_protein_4_isoform_X3_[Bombyx_mori]
Full name
Protein gustavus      
Location in the cell
Mitochondrial   Reliability : 2.759
 

Sequence

CDS
ATGAAATTTTCCAGGTCATTAAACATATTCGTTAAGGAAGAAGACGCACTGACATTCCACCGGCACCCGGTCGCGCAGAGCACGGACTGCATCCGCGGCCGCACGGGCTACACGCGCGGGCTGCACTGCTGGGAGGTGGTGTGGCCGGCACGACAGCGCGGCACGCACGCCGTCGTGGGCGTCGCCACGTCCCACGCGCCCCTGCACTCAGTCGGCTATCAGAGTCTAGTCGGGGCCACCGATCAGAGCTGGGGCTGGGATTTGGGTAGAAATAAGGTGTTCCATAACGCGAAAGGCACGGGCGGCGGCGGCACGACGTACCCGGCGCTGCTGCGGCCCGACGAACAGTTCCTCGTGCCGGACCGCGTGCTCGTCGTGCTCGACATGGACGAGGGCACGCTCGCCTTCTGCGCCGACGGACGCTACCTCGGCGTCGCGGCGCGCGGCCTGCGCGGCAAGACGCTCTACCCCATCGTCTCCGCCGTCTGGGGGCACGCCGAGATCACCATGAAGTACATCGGCGGGCTAGATCCGGAGCCGCTGCCGCTGATGGAGCTGTGCCGGCGCGTGATCCGGCAGCGCGTGGGCCGGGGCCGGCTGCGCGCGGCGGCGTCCCGCCTGTCGCTCCCGCCCGCGCTCACGGCGTACCTGCTGTACCGCGCGCCCTAG
Protein
MKFSRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHAVVGVATSHAPLHSVGYQSLVGATDQSWGWDLGRNKVFHNAKGTGGGGTTYPALLRPDEQFLVPDRVLVVLDMDEGTLAFCADGRYLGVAARGLRGKTLYPIVSAVWGHAEITMKYIGGLDPEPLPLMELCRRVIRQRVGRGRLRAAASRLSLPPALTAYLLYRAP

Summary

Description
Involved in the localization of vas to the posterior pole of the oocyte. Required maternally in the germ line for efficient primordial germ cell formation.
Subunit
Interacts (via B30.2/SPRY domain) with vas; this interaction may be necessary for the transport of vas to the posterior pole of the oocyte. Interacts with Cul-5. May associate with the Elongin BC complex composed of Elongin-B and Elongin-C.
Similarity
Belongs to the SPSB family.
Keywords
3D-structure   Complete proteome   Cytoplasm   Developmental protein   Nucleus   Reference proteome  
Feature
chain  Protein gustavus
EMBL
KQ459591    KPI96951.1    KQ459989    KPJ18727.1    KZ149894    PZC78868.1    + More
NWSH01000002    PCG81071.1    ODYU01001751    SOQ38384.1    PCG81069.1    PCG81072.1    AGBW02012259    OWR45322.1    BABH01012612    AJVK01005388    AJVK01005389    JTDY01000427    KOB77226.1    GFDF01000951    JAV13133.1    GFDF01000950    JAV13134.1    GGMR01013423    MBY26042.1    UFQS01000004    UFQT01000004    SSW96807.1    SSX17194.1    GALX01002134    JAB66332.1    GGMS01003782    MBY72985.1    GEDC01029542    GEDC01022706    GEDC01019871    GEDC01006089    GEDC01004115    GEDC01000749    JAS07756.1    JAS14592.1    JAS17427.1    JAS31209.1    JAS33183.1    JAS36549.1    GEZM01083737    GEZM01083736    JAV61053.1    ABLF02039268    LJIG01022692    KRT79217.1    GAPW01002255    JAC11343.1    APGK01036343    KB740939    ENN77728.1    JXUM01006998    KQ560228    KXJ83733.1    KB632013    ERL88022.1    GBHO01032056    JAG11548.1    CH477724    EAT36876.1    EJY57897.1    GECU01008003    JAS99703.1    GFDL01001845    JAV33200.1    GFDL01015738    JAV19307.1    DS231913    EDS25925.1    GECZ01002440    JAS67329.1    GEBQ01027063    GEBQ01003031    GEBQ01002812    JAT12914.1    JAT36946.1    JAT37165.1    KK107138    EZA57967.1    KK856155    PTY25047.1    GEDC01027969    GEDC01006712    JAS09329.1    JAS30586.1    GBRD01017900    GBRD01017899    GBRD01016176    JAG47927.1    GEDC01024044    GEDC01022326    GEDC01021854    GEDC01017080    GEDC01011323    GEDC01000250    JAS13254.1    JAS14972.1    JAS15444.1    JAS20218.1    JAS25975.1    JAS37048.1    GEDC01019496    GEDC01019159    JAS17802.1    JAS18139.1    DS235829    EEB17985.1    KQ971361    KYB25844.1    PYGN01000003    PSN58391.1    GDIQ01040700    JAN54037.1    JR040932    AEY59330.1    AE013599    AFH07895.1    AY119609    BT089043    BT099916    BT126146    AAM50263.1    AAM68373.2    ADZ74173.1    GECL01000618    JAP05506.1    GBBI01002204    JAC16508.1    GBGD01002171    JAC86718.1    CH933807    KRG03857.1    GBRD01017896    JAG47931.1    EDW13545.1    GDKW01003191    JAI53404.1    GL439322    EFN67424.1    CM002911    KMY91599.1    KMY91601.1    GANO01000623    JAB59248.1    KQ414582    KOC70812.1    CH480857    EDW52702.1    CM000366    EDX17054.1    KMY91596.1    KMY91598.1    KMY91600.1    CH891608    KRK05127.1    CH954177    KQS71058.1    EDW99541.1    KQ435745    KOX76621.1    CH940649    EDW64555.1    CH475636    EDY70908.1    CH479304    EDW26091.1    EDV59927.1    GDHC01003354    JAQ15275.1    KRF81716.1    GAMC01001714    JAC04842.1    GDHF01023251    JAI29063.1    CH916372    EDV99458.1    GAMC01001713    JAC04843.1    KMY91597.1    GGFK01009948    MBW43269.1    GEBQ01004134    JAT35843.1    GBXI01016022    JAC98269.1    CP012523    ALC39195.1    GBXI01014071    GBXI01006904    JAD00221.1    JAD07388.1    CH963857    EDW76058.1    GL732550    EFX79840.1    ADMH02000157    ETN67541.1    KQ977595    KYN01634.1    GGFM01007847    MBW28598.1    GGFL01000018    MBW64196.1    KRF98369.1    GGFJ01006925    MBW56066.1   
Pfam
PF00622   SPRY        + More
PF07525   SOCS_box
Interpro
IPR001870   B30.2/SPRY        + More
IPR013320   ConA-like_dom_sf       
IPR003877   SPRY_dom       
IPR001496   SOCS_box       
IPR036036   SOCS_box-like_dom_sf       
SUPFAM
SSF49899   SSF49899        + More
SSF158235   SSF158235       
PDB
2FNJ     E-value=7.31927e-85,     Score=797

Ontologies

Topology

Subcellular location
Cytoplasm   Component of the cytoplasmic ribonucleoprotein (RNP) bodies which concentrate at the perinuclear region of the nurse cell and in punctate aggregates throughout the cytoplasm. Some cortical enrichment of these aggregates is also observed. At stage 7, accumulates in the anterior cytoplasm of the oocyte, whereas during stage 10 accumulates at the posterior pole. This posterior distribution is not maintained in later developmental stages.   With evidence from 4 publications.
Nucleus   Component of the cytoplasmic ribonucleoprotein (RNP) bodies which concentrate at the perinuclear region of the nurse cell and in punctate aggregates throughout the cytoplasm. Some cortical enrichment of these aggregates is also observed. At stage 7, accumulates in the anterior cytoplasm of the oocyte, whereas during stage 10 accumulates at the posterior pole. This posterior distribution is not maintained in later developmental stages.   With evidence from 4 publications.
Length:
222
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.24966
Exp number, first 60 AAs:
0.00039
Total prob of N-in:
0.04818
outside
1  -  222
 
 

Population Genetic Test Statistics

Pi
210.897855
Theta
166.138892
Tajima's D
0.77488
CLR
0
CSRT
0.592420378981051
Interpretation
Uncertain
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