Gene

KWMTBOMO01358

Annotation

endonuclease-reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr3(+):8955457-8956268      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.819 Nuclear   Reliability : 1.833

CDS

ATGCGCATAAATACCACCGATTCGGCTCCTATGTCGATCAAAGGGAGGCACATCGAGCAGGTGGGAAGCTTCTGTTACCTGGGCAGCATTGTGGACGATAGGGGAGGCACCGAGGCAGACATTGCGGCTCGTATAAATAAAGCCAGAGCCGCGTTTAGTCAACTTAGGCCAGTGTGGAGTTCCTCAACCTTAACAAGACGAACAAAGGTGAGGATCTTCAACTCAAATGTAAAGTCTGTATTGCTGTACGGGAGCGAAACTTGGTTTGTTCGCAAGGACTTGATCAAAAAACTTCAAGTGTTTGTGAATAAGTGCCTGCGTCAGATTTTGAAAATCTTTTGGCCTGAGAAGATCACTAACAAAGAGCTGTGGAGGATCACTAAGCAGACACCAATGGAGAAGGAGATCCTTACGCGGAAGTGGTATTGGATTGGTCACACTCTGAGAAAGCCCGATACACACATATCAAAGAGAGCACTGACCTGGAAAGTGTCTGGTAAAAGGAAGAGAGGCCGCCCCAGAACAACTTGGCGTCGCTCGGTGGAGCAGGAGCTAGGGGTCTTGGGCATGACGTGGGAGGAGCTAGAACAGACTGCCCAAGACCGATACAAATGGAAAAATTTGATTCGAGCCCTACACCCCAGCAGAGGGTAA

Protein

MRINTTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGTEADIAARINKARAAFSQLRPVWSSSTLTRRTKVRIFNSNVKSVLLYGSETWFVRKDLIKKLQVFVNKCLRQILKIFWPEKITNKELWRITKQTPMEKEILTRKWYWIGHTLRKPDTHISKRALTWKVSGKRKRGRPRTTWRRSVEQELGVLGMTWEELEQTAQDRYKWKNLIRALHPSRG

Uniprot

A0A183M077   A0A183MNJ1   A0A183LMQ3   A0A183MZP4   A0A183LKT4   A0A183LX04   + More
A0A183MZL0   A0A183N1P4   A0A183N7T7   A0A183N9J9   A0A183MQ56   A0A183MWW8   A0A183N1I4   A0A183MJF5   A0A183MUA0   A0A183RT11   A0A183MTN5   A0A2V3ZQY2   A0A3P8D4R4   A0A183N4J4   A0A183N0C3   A0A183LNY4   A0A183LXJ8   A0A183M7B7   A0A183L9Y3   A0A183JFC5   A0A183N4P9   A0A183LFC5   A0A3P7YIC7   A0A183L8M3   A0A183LRM5   A0A183LQZ7   A0A3P7VBD6   A0A183LJU6   A0A183M991   A0A183LFL1   A0A183LWV5   A0A183LTI8   A0A183LM32   A0A183N5T9   A0A183MV88   A0A183MK02   A0A183MW18   A0A3P8DSJ5   A0A183LXS6   A0A183MVL7   A0A183M8Y6   A0A183MYL5   A0A183MJM6   A0A3P8BEK6   A0A3P8D4M6   A0A183MYH8   A0A183LWT4   A0A183N4I5   A0A183MMK9   A0A1S3R3H4   A0A2B4SAP6   A0A183LYB9   A0A183LXC0   A0A183LK20   A0A183M735   A0A183MGR8   A0A3P8F159   A0A183LMB0   A0A183LD39   A0A3P8FQB8   A0A183MNJ7   A0A183LL24   A0A183N9K2   A0A3P8F2V3   A0A183M0Z4   A0A183LMU4   A0A3P7XFU6   A0A183N537   A0A183LH56   A0A183MVT1   A0A183MQB6   A0A183LW75   A0A183N861   A0A3P8GJB9   A0A183MT61   A0A183MIV8   A0A183N3L1   A0A183L1S2   A0A183L898   A0A183N8V3   A0A183MLE7   A0A183MUD4   A0A183N6H6   A0A3P8E8E2   A0A183LX25   A0A2B4R8F8   A0A183MTB9   A0A183MB76   Q4QQE8   A0A183MSR5   A0A183MT03   A0A183M7Q8   A0A183M5M5   A0A183N354  

Pubmed

15939396   

EMBL

UZAI01004464    VDO86378.1    UZAI01017420    VDP24375.1    UZAI01001688    VDO64417.1    + More
UZAI01018739    VDP39825.1    UZAI01001403    VDO61559.1    UZAI01003585    VDO80903.1    UZAI01018724    VDP39735.1    UZAI01019052    VDP42443.1    UZAI01020340    VDP50984.1    UZAI01020849    VDP53465.1    UZAI01017570    VDP26767.1    UZAI01018356    VDP36181.1    UZAI01019026    VDP42217.1    UZAI01017079    VDP20202.1    UZAI01018026    VDP32309.1    UZAI01017960    VDP31512.1    QFLI01000043    PXX94669.1    UZAI01019583    VDP46317.1    UZAI01018847    VDP40651.1    UZAI01001913    VDO66451.1    UZAI01003726    VDO81887.1    UZAI01007080    VDO97899.1    UZAI01000113    VDO48732.1    UZAK01001109    VDO67373.1    UZAI01019612    VDP46544.1    UZAI01000636    VDO55123.1    UZAI01002406    VDO71224.1    UZAI01002278    VDO69979.1    UZAI01000023    VDO40719.1    UZAI01001248    VDO59918.1    UZAI01008168    VDP01266.1    UZAI01000665    VDO55408.1    UZAI01003542    VDO80603.1    UZAI01002802    VDO74779.1    UZAI01001589    VDO63472.1    UZAI01019858    VDP48169.1    UZAI01018134    VDP33674.1    UZAI01017127    VDP20805.1    UZAI01018232    VDP34805.1    UZAI01003795    VDO82334.1    UZAI01018179    VDP34160.1    UZAI01007972    VDP00733.1    UZAI01018587    VDP38419.1    UZAI01017095    VDP20421.1    UZAI01019577    VDP46277.1    UZAI01018573    VDP38288.1    UZAI01003535    VDO80521.1    UZAI01017336    VDP23465.1    LSMT01000096    PFX27744.1    UZAI01003944    VDO83316.1    UZAI01003669    VDO81474.1    UZAI01001284    VDO60274.1    UZAI01006962    VDO97477.1    UZAI01016900    VDP17799.1    UZAI01001622    VDO63809.1    UZAI01000395    VDO52652.1    UZAI01017422    VDP24403.1    UZAI01001439    VDO61935.1    VDP53468.1    UZAI01004701    VDO87496.1    UZAI01001711    VDO64609.1    UZAI01019694    VDP47112.1    UZAI01000870    VDO57159.1    UZAI01017590    VDP27031.1    UZAI01003387    VDO79393.1    UZAI01020438    VDP51493.1    UZAI01018201    VDP34463.1    UZAI01017899    VDP30881.1    UZAI01017038    VDP19641.1    UZAI01019392    VDP45024.1    UZAK01046171    VDP74918.1    UZAI01000004    VDO22420.1    UZAI01020637    VDP52581.1    UZAI01017242    VDP22302.1    UZAI01018036    VDP32422.1    UZAI01020014    VDP49155.1    UZAI01009600    VDP04933.1    UZAI01003602    VDO81016.1    LSMT01001244    PFX12647.1    UZAI01017919    VDP31111.1    BN000794    CAJ00236.1    UZAI01017854    VDP30379.1    UZAI01017882    VDP30666.1    UZAI01007299    VDO98560.1    UZAI01006331    VDO94909.1    UZAI01019313    VDP44365.1   

Proteomes

UP000050790    UP000277204    UP000050792    UP000248079    UP000050789    UP000087266    + More
UP000225706   

Pfam

PF00078   RVT_1        + More
PF00625   Guanylate_kin
PF14529   Exo_endo_phos_2

Interpro

IPR000477   RT_dom        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR008144   Guanylate_kin-like_dom       
IPR008145   GK/Ca_channel_bsu       
IPR027417   P-loop_NTPase       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF56219   SSF56219       

Gene 3D

3.30.40.10     3.60.10.10    

ProteinModelPortal

A0A183M077   A0A183MNJ1   A0A183LMQ3   A0A183MZP4   A0A183LKT4   A0A183LX04   + More
A0A183MZL0   A0A183N1P4   A0A183N7T7   A0A183N9J9   A0A183MQ56   A0A183MWW8   A0A183N1I4   A0A183MJF5   A0A183MUA0   A0A183RT11   A0A183MTN5   A0A2V3ZQY2   A0A3P8D4R4   A0A183N4J4   A0A183N0C3   A0A183LNY4   A0A183LXJ8   A0A183M7B7   A0A183L9Y3   A0A183JFC5   A0A183N4P9   A0A183LFC5   A0A3P7YIC7   A0A183L8M3   A0A183LRM5   A0A183LQZ7   A0A3P7VBD6   A0A183LJU6   A0A183M991   A0A183LFL1   A0A183LWV5   A0A183LTI8   A0A183LM32   A0A183N5T9   A0A183MV88   A0A183MK02   A0A183MW18   A0A3P8DSJ5   A0A183LXS6   A0A183MVL7   A0A183M8Y6   A0A183MYL5   A0A183MJM6   A0A3P8BEK6   A0A3P8D4M6   A0A183MYH8   A0A183LWT4   A0A183N4I5   A0A183MMK9   A0A1S3R3H4   A0A2B4SAP6   A0A183LYB9   A0A183LXC0   A0A183LK20   A0A183M735   A0A183MGR8   A0A3P8F159   A0A183LMB0   A0A183LD39   A0A3P8FQB8   A0A183MNJ7   A0A183LL24   A0A183N9K2   A0A3P8F2V3   A0A183M0Z4   A0A183LMU4   A0A3P7XFU6   A0A183N537   A0A183LH56   A0A183MVT1   A0A183MQB6   A0A183LW75   A0A183N861   A0A3P8GJB9   A0A183MT61   A0A183MIV8   A0A183N3L1   A0A183L1S2   A0A183L898   A0A183N8V3   A0A183MLE7   A0A183MUD4   A0A183N6H6   A0A3P8E8E2   A0A183LX25   A0A2B4R8F8   A0A183MTB9   A0A183MB76   Q4QQE8   A0A183MSR5   A0A183MT03   A0A183M7Q8   A0A183M5M5   A0A183N354  

KEGG

100286764    no KO assigned | (RefSeq) Obp6, fmxg2I3; odorant-binding protein 6

GO

GO:0003777   GO:0007018   GO:0004519   GO:0003964  

Length:

217

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.12322

Exp number, first 60 AAs:

0.0014

Total prob of N-in:

0.16852

outside

1  -  217

 

 

Pi

280.335265

Theta

120.342338

Tajima's D

3.653909

CLR

18.971429

CSRT

0.996250187490625

Interpretation

Uncertain