SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01356
Annotation
Uncharacterized_protein_OBRU01_12822_[Operophtera_brumata]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.721
 

Sequence

CDS
ATGAAGTGTTTGTTTGTTCCAGGTTGGTGGCGCACGAGCCTAATGAGCGCGTGCGCGGCGGCCGCCATGCGCGAAAAGCACGCGGCGCCGCGCCGCCTTGCCTCACCCCCGCGGTCACCCCATGAGCGTCTCCCCAGCCCCCTAGGCTCCCCACGAACAGATGAGCCATTAGATCTCCGAGTAACGCACAAACGTCCACAGCGACTAGAAGATGAAAATTGCAACTTAATAACTCCTTCACCGCCGCCGCATCCGACACATCCAGCACACCCGGCACATCCAGCCCTACTGCGGTTCTGTCCGCGGCTACCGCTCGCGTTGCCGGCGTCATTCGGGCGGTACCCATTTCTGCCAGCAGCTGCGGCTACTCTACTTGCCCCAGGAGCTCCCCGACCACCGCCGATACCACCAAACTCAGGCGTGCCCCGGGCGAGAGACCGATACACGTGTTCCTACTGCGGCAAAGCATTCCCTCGTAGTGCAAACCTAACAAGACACCTTCGAACCCACACAGGCGAACAACCGTACCGTTGTAAATACTGTGAGCGTTCTTTCTCTATCTCATCAAATCTCCAGCGGCACGTGCGAAATATACACAACAAAGAACGCCCGTTCCGGTGTCGACATTGCGACCGCTGTTTTGGTCAACAAACAAATTTGGACAGACACTTAAAGAAACACGAAGCGGAAAATGGCGATGACAGTCGCCGTAGATCTCCGGACGAGACGTACTTCGAGGAGATCAGGTCTTTCATGGGACGCGTGGCACCTGCTCGTCGAGCCGCCGCCGCCGCCACCGCTAGTGCCGCGGACCACACTTGA
Protein
MKCLFVPGWWRTSLMSACAAAAMREKHAAPRRLASPPRSPHERLPSPLGSPRTDEPLDLRVTHKRPQRLEDENCNLITPSPPPHPTHPAHPAHPALLRFCPRLPLALPASFGRYPFLPAAAATLLAPGAPRPPPIPPNSGVPRARDRYTCSYCGKAFPRSANLTRHLRTHTGEQPYRCKYCERSFSISSNLQRHVRNIHNKERPFRCRHCDRCFGQQTNLDRHLKKHEAENGDDSRRRSPDETYFEEIRSFMGRVAPARRAAAAATASAADHT

Summary

Pfam
PF00096   zf-C2H2
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF57667   SSF57667       
PDB
1MEY     E-value=4.98235e-14,     Score=187

Ontologies

Topology

Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.06269
Exp number, first 60 AAs:
0.05419
Total prob of N-in:
0.01533
outside
1  -  273
 
 

Population Genetic Test Statistics

Pi
134.228497
Theta
146.374136
Tajima's D
-0.322336
CLR
0.789934
CSRT
0.28113594320284
Interpretation
Uncertain
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