Gene

KWMTBOMO01353  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008997

Annotation

PREDICTED:_ATP-dependent_RNA_helicase_DHX36_[Bombyx_mori]

Location

Bomo_Chr3(-):8466328-8476866      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.134

CDS

ATGTATTATAAAGCTTTAAGTATTGAAAAAGGAAAGAAAAATAAGAAAAACAATGTGATACGCTTCAAAATTCCACCAAGCATTGTCTCATCACTGTATAGTAATTTAGCATCAATAGAAAAGCTTGCTAAAGGACTGAACATTTGCATAAAACCAATAGAAAAATTGACTATTGCAGAAACACCAAAAGGCTTAAAACCTGAACTGTCATTACATGAAGCGATGTACATGAACACGAGTACAGCTGAAAACAAAAACAGTGTGCAGGCAAGTGATAATGAAAATCTATTTGAAGCAAAAACACCACTAACTGATTTTAAAAAGCTAGAAGATATTTCAATGATATCTGAAGATGCTGAATTACGTTCACCAAGCGATGTTGACAACAAATCAAATGGGCCATCTAAGGATTTTATTTCAGTAAAGGATGAAACTGTGGAAATCAAATTAGAGAACCGTTTTTTATCACTTAGAAGTTCAGTTAACTATAAATATGGCTACGAAGATATCATAACTGGGACGTTTGATGAAAAATTAGATGAATGCTTGGCAAGAGGAATCAACATTAATATTAAGAATGAAGTAAATAATGATCTCAGTTTTGCAATGATAGAAGAATACAATGATATGTTGAGCAAAGATGGTTATAAATTGCACATGAAATTTCGTGACAAGCTACCTACATACCAAAAATATGAAGAGCTCTTAAACATGATCAACAATAATCAAGTTTTGGTCATAAGTGGAGAAACAGGATGTGGCAAATCGACACAGGTACCTCAAATAATTCTTGATGATGCCATTATTAACAAAAGAGGTGCAAATGTGAAGATTCTAGTAACTCAACCCAGGAGAATCGCAGCTTCATCATTAGCTATGAGAGTGGCTGAAGAGAGAAATGAGAAACTAGGGAATAGTGTGGGATATGCTGTTAGATTGGAGAAGGTTGATCCAAGGCCTCTAGGAAGCATTATGTTTTGTACCACAGGTATACTACTGACTGAACTTGAAGTTAATCAAAGTTTGTCTAACTATAGCCATATTATCCTCGATGAAGTGCATGAAAGGGACACACATATCGACTTGTCTATGTGTATGCTAAAAAAGGTACTGAATAAGCGAAAAGACTTGAAACTAATACTTATGAGTGCCACAATAAATGCTGAACATCTCACTTCCTACTTTGGTGACTGTCAAAGAATCCACATTGAAGGTATAGCATATCCTGTCCAAGATGTTTATTTAGAAGAGATATTGAAAATGACTGGATATAAGTTGCCACCCGCTGAAAACAAAAGAGCTGATAAGAGAAAGACTTGGCAAAATCACACGAAAAAGGCTAAAGCTATGGCAGCCTCTGAAATGGAAAAAGACATACAATATAAAGCAGAAATTGGACCATGGCTAGAAACCGTAAAAGGCAAAATCGGTTGGGATGTATGTACTACATTACTAGATGCAAGGATCGAAGATATTAATATTGATTTAATTGTAGAAGTTCTTAAATTAATTAGCAGTAAAGAACCCGGCGCCGTCCTGGTGTTTCTACCCGGAATCGGTGATATAACCAAGCTCATGTCCGTGATGGAGCAGAGTTGTGAATTTCCGAAATCGAAATTCGACGTATATCCTCTACATTCGCGACTACCTTCTTTGGAACAACACAAGATTTTCCAAAGACCACCGACCGGTATCCGAAAAATCATAATAGCTACGAATATCGCGGAAACATCAATTACAATCGATGATATTGTATACGTAATCGATTGCGGTAAGATTAAATACAGCGGACTAAGCATTGCGGACAACATATCGACATTGAAAACTGAGTGGATATCTCAGGCCAATTTGCGACAAAGACGAGGCCGCGCCGGGCGATGCCAACCCGGCGTCTGTTATCACTTAGTTACATCGTTCCGAGCTGGGAAACTCGAACCGAGCCTAAAGCCTGAGATGCAGAGGAGTGACCTACTCGAGCCCGTGCTTGCCATAAAACGGCTTCGACTCGGAAAAGCTGCTGATGCTTTAAAGGATATGGCGGCTCCACCGGCAGAAGAAACTATTAAAGCTGCCGTTAAACATTTACAACAATGTGGAGCCCTCAATGAATCAGAAATCTTAACACCTCTTGGTTGGCATTTGGCACGACTACCAGTTCACCCTGCGGCTGGTAAATTATTGCTGTTGGGAGCGCTGTTCGGTTGTTTGGACCGAGCCGCCAGCGTTGCCGCCGTTTGGGGCTTCAAAGACCCTTTTCAGTTAGTTATTGGAAAAGAAAAACAAATGGACCTAGCAAAAAAGGAATTAGCCCTAGGTGAGCCAAGTGACCACGTTGCGATATCCGAGGCAATTATACAATGGGAACAATGCCCCAGGCAACATCGTAATAATTTCGCATACAAAAACTTCCTTTCCATGAATACTCTGAAATTACTCTCTGAAATGAAGCATCAGCTGGCCGACAATTTGAGGCAGATGGGCTTTTTGAATACTGGCAACATCAAATCGGCTTGGAAAAATAGAAATGCTAATAATCTAAGCCTTTTTAAAGCTATAGTCGCTGCAGCGCTATACCCCAATATTGGTTCTGTGAGGTGGACGAATCTTCATAACCGAAATCCACGTAAGACTCCCCGCATCAAGGTTTGGACTCCGGAAGACGGCTCGATCGCGCTGCACCCCAGCAGCGTCATGGCGAACAAACACAACGGCGGCCTCAACGCTCAGCCGATGTGTGCGAGCCCGGGCGCTAACTGGCTGGTGTACTGGTTGAAGCGGCGCTCGACCGATTTGTTCTTGTTTGACGTCACTCTGGTCTATACTCTGCCTCTGTTGTTTTTCGGTGAACTTCACGTGTCTCCAGCAGCTGAAGACCCAGATGACTGTATCATATCGATAGAAAAGATATCTGTTTGTTGCAAGAAGGAAACTACACAATTGCTGTTTGAAATGCGGTCGTTATTAGACCACGTTTTAGCCGACAAGATCATGGCGTCTTCCGAACACTCCGTAAAAAATAATGCCTTTGAAGAACAGGTTCTGAATGCAGTGATAAAGCTTATTACAGCAGAGGACGAGGGCGCTGAATATTTGAACAGCGACGACGACAATTCCGAATCTGATCATTCAGAATACGAAACGAGCAGGAGGTGGTACCGTTAA

Protein

MYYKALSIEKGKKNKKNNVIRFKIPPSIVSSLYSNLASIEKLAKGLNICIKPIEKLTIAETPKGLKPELSLHEAMYMNTSTAENKNSVQASDNENLFEAKTPLTDFKKLEDISMISEDAELRSPSDVDNKSNGPSKDFISVKDETVEIKLENRFLSLRSSVNYKYGYEDIITGTFDEKLDECLARGININIKNEVNNDLSFAMIEEYNDMLSKDGYKLHMKFRDKLPTYQKYEELLNMINNNQVLVISGETGCGKSTQVPQIILDDAIINKRGANVKILVTQPRRIAASSLAMRVAEERNEKLGNSVGYAVRLEKVDPRPLGSIMFCTTGILLTELEVNQSLSNYSHIILDEVHERDTHIDLSMCMLKKVLNKRKDLKLILMSATINAEHLTSYFGDCQRIHIEGIAYPVQDVYLEEILKMTGYKLPPAENKRADKRKTWQNHTKKAKAMAASEMEKDIQYKAEIGPWLETVKGKIGWDVCTTLLDARIEDINIDLIVEVLKLISSKEPGAVLVFLPGIGDITKLMSVMEQSCEFPKSKFDVYPLHSRLPSLEQHKIFQRPPTGIRKIIIATNIAETSITIDDIVYVIDCGKIKYSGLSIADNISTLKTEWISQANLRQRRGRAGRCQPGVCYHLVTSFRAGKLEPSLKPEMQRSDLLEPVLAIKRLRLGKAADALKDMAAPPAEETIKAAVKHLQQCGALNESEILTPLGWHLARLPVHPAAGKLLLLGALFGCLDRAASVAAVWGFKDPFQLVIGKEKQMDLAKKELALGEPSDHVAISEAIIQWEQCPRQHRNNFAYKNFLSMNTLKLLSEMKHQLADNLRQMGFLNTGNIKSAWKNRNANNLSLFKAIVAAALYPNIGSVRWTNLHNRNPRKTPRIKVWTPEDGSIALHPSSVMANKHNGGLNAQPMCASPGANWLVYWLKRRSTDLFLFDVTLVYTLPLLFFGELHVSPAAEDPDDCIISIEKISVCCKKETTQLLFEMRSLLDHVLADKIMASSEHSVKNNAFEEQVLNAVIKLITAEDEGAEYLNSDDDNSESDHSEYETSRRWYR

Uniprot

H9JHJ9   A0A2H1VDY7   A0A212F590   A0A194PVD9   A0A2W1C175   S4PXP2   + More
A0A0L7KTG9   E2AXE3   A0A195FSJ8   A0A2A3ECJ0   A0A088A6K8   A0A154PD24   F4WBQ2   A0A232ETT4   K7IVU8   A0A2J7RBV0   A0A2J7RBV4   A0A0L7R8J1   A0A151XEP8   A0A195BD28   A0A195DI87   E9IG17   A0A0N0U387   A0A067R851   A0A1W4XL65   A0A2J7RBW7   A0A158NRK7   A0A069DXN1   A0A224X6C8   A0A023F1I7   A0A3M6TB07   A0A087XVI7   A0A2B4RQD7   M3ZH26   A0A3B3VIA1   A0A3Q0HJ72   A0A1L8GAK8   A0A3P9K5Z8   A0A3P9N3T6   A0A3B3HH74   A0A3B3YE48   A0A1A8QCW6   A0A1A8NGH4   A0A1A8KW15   A0A3P9HF04   A0A131YN63   A0A1A8CX65   A0A1A8IEX4   A0A1A8QZ52   A0A1A8ML94   A0A1A8B508   A0A1A8TYY7   A0A1A7WZJ2   A0A1A7YRG5   A0A131XYB7   A0A1A8FJ48   A0A147BQ62   A0A093KUT0   A0A091IEM5   A0A2I0M1J8   H3B943   A0A0T6BCB5   H3B942   A0A3B3SCT4   A0A0A0AF48   D2HQH3   F6Q4S1   A0A1X7VIU1   A0A091W2D4   A0A093GU86   M3W2Z7   A0A093SNM1   A0A1V4KM25   A0A093NBF9   F7ETR2   A0A091SHM9   G1LZ43   A0A1Y1N3Q9   A0A146ZY80   A0A091MV85   A0A091GIZ3   A0A3P8XVN2   A0A091IXG9   A0A091P0W0   U3IYV0   A0A384DDN6   A0A2K5C9F2   A0A091THF0   A0A3P9AWJ8   A0A2K6T8G7   A0A3B4VPF7   A0A1S2ZLC6   A0A2U3W9Q0   F6X412   A0A091HEQ4   W5M293   A0A091XVC9   I3J6H4   W5M2A6   A0A087QIK8  

Pubmed

19121390    22118469    26354079    28756777    23622113    26227816    + More
20798317    21719571    28648823    20075255    21282665    24845553    21347285    26334808    25474469    30382153    23542700    27762356    17554307    26830274    29652888    23371554    9215903    29240929    20010809    19892987    17975172    20431018    28004739    25069045    23749191    24813606    25186727   

EMBL

BABH01012710    BABH01012711    ODYU01002049    SOQ39080.1    AGBW02010217    OWR48906.1    + More
KQ459591    KPI96958.1    KZ149894    PZC78880.1    GAIX01004693    JAA87867.1    JTDY01005839    KOB66562.1    GL443548    EFN61923.1    KQ981280    KYN43416.1    KZ288300    PBC28896.1    KQ434874    KZC09687.1    GL888066    EGI68330.1    NNAY01002229    OXU21761.1    NEVH01005890    PNF38309.1    PNF38312.1    KQ414632    KOC67148.1    KQ982244    KYQ58849.1    KQ976511    KYM82476.1    KQ980824    KYN12603.1    GL762910    EFZ20446.1    KQ435922    KOX68608.1    KK852639    KDR19628.1    PNF38308.1    ADTU01023989    GBGD01000308    JAC88581.1    GFTR01008420    JAW08006.1    GBBI01003554    JAC15158.1    RCHS01003989    RMX38533.1    AYCK01011525    LSMT01000394    PFX18760.1    CM004474    OCT80873.1    HAEI01005008    SBR91366.1    HAEG01002811    SBR68001.1    HAEE01016675    SBR36725.1    GEDV01008575    JAP79982.1    HADZ01019320    SBP83261.1    HAED01009421    SBQ95633.1    HAEH01013780    SBR98294.1    HAEF01016182    SBR57341.1    HADY01024097    SBP62582.1    HAEJ01000059    SBS40516.1    HADW01009937    SBP11337.1    HADX01010559    SBP32791.1    GEFM01004534    JAP71262.1    HAEB01011632    SBQ58159.1    GEGO01002507    JAR92897.1    KK592723    KFW01181.1    KL218477    KFP05800.1    AKCR02000049    PKK23555.1    AFYH01073792    AFYH01073793    AFYH01073794    AFYH01073795    LJIG01001964    KRT84976.1    KL871660    KGL92781.1    GL193180    EFB20450.1    KL410321    KFQ95988.1    KK375638    KFV45816.1    AANG04001816    KL672030    KFW84209.1    LSYS01002834    OPJ85451.1    KL224626    KFW62288.1    AAMC01020934    AAMC01020935    KK473021    KFQ58124.1    ACTA01068082    ACTA01076082    GEZM01017017    JAV90966.1    GCES01015019    JAR71304.1    KK517980    KFP65405.1    KL448192    KFO81164.1    KK501044    KFP12278.1    KK647933    KFQ00053.1    ADON01099790    KK453376    KFQ74908.1    KL532613    KFO93302.1    AHAT01022488    KK736027    KFR16841.1    AERX01035202    KL225635    KFM01062.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000037510    UP000000311    UP000078541    + More
UP000242457    UP000005203    UP000076502    UP000007755    UP000215335    UP000002358    UP000235965    UP000053825    UP000075809    UP000078540    UP000078492    UP000053105    UP000027135    UP000192223    UP000005205    UP000275408    UP000028760    UP000225706    UP000002852    UP000261500    UP000189705    UP000186698    UP000265180    UP000242638    UP000001038    UP000261480    UP000265200    UP000054308    UP000053872    UP000008672    UP000261540    UP000053858    UP000002281    UP000007879    UP000053283    UP000011712    UP000053258    UP000190648    UP000054081    UP000008143    UP000008912    UP000053760    UP000265140    UP000053119    UP000016666    UP000261680    UP000291021    UP000233020    UP000265160    UP000233220    UP000261420    UP000079721    UP000245340    UP000008225    UP000018468    UP000053605    UP000005207    UP000053286   

PRIDE

H9JHJ9   

Pfam

PF07717   OB_NTP_bind        + More
PF04408   HA2
PF00271   Helicase_C
PF00270   DEAD
PF00246   Peptidase_M14

Interpro

IPR007502   Helicase-assoc_dom        + More
IPR027417   P-loop_NTPase       
IPR011709   DUF1605       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR000834   Peptidase_M14       
IPR034286   M14_AGBL5-like       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc
cd06236  M14_AGBL5_like

ProteinModelPortal

H9JHJ9   A0A2H1VDY7   A0A212F590   A0A194PVD9   A0A2W1C175   S4PXP2   + More
A0A0L7KTG9   E2AXE3   A0A195FSJ8   A0A2A3ECJ0   A0A088A6K8   A0A154PD24   F4WBQ2   A0A232ETT4   K7IVU8   A0A2J7RBV0   A0A2J7RBV4   A0A0L7R8J1   A0A151XEP8   A0A195BD28   A0A195DI87   E9IG17   A0A0N0U387   A0A067R851   A0A1W4XL65   A0A2J7RBW7   A0A158NRK7   A0A069DXN1   A0A224X6C8   A0A023F1I7   A0A3M6TB07   A0A087XVI7   A0A2B4RQD7   M3ZH26   A0A3B3VIA1   A0A3Q0HJ72   A0A1L8GAK8   A0A3P9K5Z8   A0A3P9N3T6   A0A3B3HH74   A0A3B3YE48   A0A1A8QCW6   A0A1A8NGH4   A0A1A8KW15   A0A3P9HF04   A0A131YN63   A0A1A8CX65   A0A1A8IEX4   A0A1A8QZ52   A0A1A8ML94   A0A1A8B508   A0A1A8TYY7   A0A1A7WZJ2   A0A1A7YRG5   A0A131XYB7   A0A1A8FJ48   A0A147BQ62   A0A093KUT0   A0A091IEM5   A0A2I0M1J8   H3B943   A0A0T6BCB5   H3B942   A0A3B3SCT4   A0A0A0AF48   D2HQH3   F6Q4S1   A0A1X7VIU1   A0A091W2D4   A0A093GU86   M3W2Z7   A0A093SNM1   A0A1V4KM25   A0A093NBF9   F7ETR2   A0A091SHM9   G1LZ43   A0A1Y1N3Q9   A0A146ZY80   A0A091MV85   A0A091GIZ3   A0A3P8XVN2   A0A091IXG9   A0A091P0W0   U3IYV0   A0A384DDN6   A0A2K5C9F2   A0A091THF0   A0A3P9AWJ8   A0A2K6T8G7   A0A3B4VPF7   A0A1S2ZLC6   A0A2U3W9Q0   F6X412   A0A091HEQ4   W5M293   A0A091XVC9   I3J6H4   W5M2A6   A0A087QIK8  

PDB

5VHE     E-value=5.71519e-164,     Score=1486

KEGG

101736021    K14442 ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] | (RefSeq) ATP-dependent RNA helicase DHX36

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0004386   GO:0003676   GO:0016021   GO:0016787   GO:0005829   GO:0005634   GO:0045995   GO:0048027   GO:0000781   GO:0003725   GO:0034459   GO:0044806   GO:0051891   GO:0004003   GO:0000978   GO:0000287   GO:0060261   GO:0009615   GO:0016607   GO:0034644   GO:0090669   GO:0042826   GO:0003723   GO:1901534   GO:0002151   GO:0034605   GO:0061158   GO:1902741   GO:0003697   GO:1904358   GO:0002735   GO:0043123   GO:0035925   GO:0010494   GO:0010501   GO:0070034   GO:2000767   GO:1900153   GO:1902064   GO:0001503   GO:0043330   GO:0051880   GO:0006359   GO:0031442   GO:1903843   GO:0004004   GO:0008026   GO:0016820   GO:0016042   GO:0006334   GO:0003779  

Length:

1053

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.12839

Exp number, first 60 AAs:

0.23842

Total prob of N-in:

0.01221

outside

1  -  1053

 

 

Pi

257.138084

Theta

187.594058

Tajima's D

0.431369

CLR

1.114548

CSRT

0.498425078746063

Interpretation

Uncertain