Gene

KWMTBOMO01342

Annotation

endonuclease-reverse_transcriptase_[Blattella_germanica]

Location

Bomo_Chr3(+):8298005-8299577      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.742

CDS

ATGATATGGGAATCTGAACAACAACCTGTCCAGTGGTATTCGGGGGTCATCTGCCCCATACACAAAAAAGGCAGCCGGAAGAAATGCAGTAACTACAGAGGAATTGCTTTACTACCTACAGCGTACAAAATACTGTCATACGTTTTACTAAGCAGGTTAGAGCCGTATTCAGAAAAAATCATTGGGGATTATCAGTGCGGCTTCAGACGTAATCGTAGTACAGTCGACCAAATCTTTACTCTGAAACAGTTAATGGAGAAAAGATGGGAGTATGCACAAAGTATTCATTCGCTCTTTGTTGATTTTGCTAAGGCCTACGACAGCATAGATAGACCGACTCTATATAGAATCCTCAAGCGCTTTAAAATCCCACAGAAACTTGTGAGAATGGTGGAGGTTGCTACTAGGGAAAGTAGAATGACGGTACGAGTTGGCGCTTCTCTCACTGATGAGTTTGACGTTGTGACTGGACTCAGGCAGGGGGACGCTCTGTCACCAATGCTGTTCAACCTGGCACTTGAACACGCCATACGGAAAGTGAACACACTAAGTGGCGGAGTGTGGCTCAACGGACAGCATAGGGTGATAGGATATACCGATGACCTCGCTCTACTTGGAGAAAGAAAGCAGCACGTTATAGACGCACTCAACTGCCTTCAACAAGAAGCCTCTCGGATTGGCCTTCGCGTGAGCCACGAGAAGACAGAATATCTTCACATGCGTCGATATAAAAACATAAGACGGAAGCGAGAAGACCTAGTGGTGGGAAATACGAGGTTCAAAGGAGTGGCTAAATTCCGGTACCTTGGCTGCACTGTAACAGACACCAATGACAGGGAAGATGAAATCGAAATTCGTATACAAAATACCCTACGATGCAGTGCAGCCCTACACCCGGTTCTCTCTTCGAAGCTACTAAGCAGGCGCACCAAGATTCGGATATACAAGACTCTAGTCAGACCGATCCTATTGTATGGATGCGAAGCATGGACGCTCACACAGAAAGAAGAGGCAAAACTTCTCGTGACGGAGCGAAAGGTATTGAGAAAAATACTAGGACCAGTTCGGAAAGAAGACGGTTCTTGGCACGTCCGGAAAAATAAGGATGTGGAGAGGCTTTTTGGTGAGCCAAATATTCTGGGGGAGATGAAGGCACGGAGGCTCGGATGGCTCGGACATGTAGTACGTATGGAGCAGGATCGGGCTGTGAAACGGGTGTACACGGGTGTACCGGAGGGACGCCGCCCCGTAGGGAGGCCCAAGTACCGCTGGTGTGACGCTGTGGAAGGAAATTTACGGGAGCTCCAAGTGTCGGACTGGCAAGGTGTTGCGCAGCGCCGGGATGAATGGCAAAGTTTATTGTCGGAGGCCAAGACCCACTTCGGGGTCATAGCGCCAGCTCAGTAG

Protein

MIWESEQQPVQWYSGVICPIHKKGSRKKCSNYRGIALLPTAYKILSYVLLSRLEPYSEKIIGDYQCGFRRNRSTVDQIFTLKQLMEKRWEYAQSIHSLFVDFAKAYDSIDRPTLYRILKRFKIPQKLVRMVEVATRESRMTVRVGASLTDEFDVVTGLRQGDALSPMLFNLALEHAIRKVNTLSGGVWLNGQHRVIGYTDDLALLGERKQHVIDALNCLQQEASRIGLRVSHEKTEYLHMRRYKNIRRKREDLVVGNTRFKGVAKFRYLGCTVTDTNDREDEIEIRIQNTLRCSAALHPVLSSKLLSRRTKIRIYKTLVRPILLYGCEAWTLTQKEEAKLLVTERKVLRKILGPVRKEDGSWHVRKNKDVERLFGEPNILGEMKARRLGWLGHVVRMEQDRAVKRVYTGVPEGRRPVGRPKYRWCDAVEGNLRELQVSDWQGVAQRRDEWQSLLSEAKTHFGVIAPAQ

Uniprot

A0A2P8YLJ1   A0A2P8YPE1   A0A2P8ZGH9   A0A2P8ZIH1   A0A060Q6A2   A0A2P8Z488   + More
A0A2P8XT91   A0A2P8ZLT6   A0A2P8YWA2   A0A2P8ZFZ0   A0A2P8Z313   A0A2P8YLY7   A0A2P8Y2S1   A0A2P8YHZ7   A0A1B0DRK3   A0A2P8ZET0   A0A2P8XR21   A0A2P8ZEA9   A0A2P8YGI5   A0A2P8YFW0   A0A2S2NQ16   A0A2P8YYC9   A0A0K8TRS6   A0A2S2N6G4   A0A023F0H0   A0A2S2PIT5   A0A2S2PCU1   A0A2P8ZAY7   A0A0K8TJE5   A0A2S2P3U1   A0A2S2N711   A0A2P8XC08   A0A2M4A6U1   A0A2P8ZCA4   A0A146KNZ7   D7F170   A0A023F0M0   A0A2M4A3Y0   A0A1B6JBJ4   J9L287   A0A2M4A3Z2   A0A023EZ68   A0A2P8YTB7   A0A367YPS2   A0A0K8S3X2   J9KUA2   A0A023F0F3   A0A0J7KMY2   A0A0U4HM41   A0A2M4CRR0   A0A069DWW0   A0A2M4A3H0   A0A2M4ACI4   A0A2M4BN64   A0A0K8SN56   A0A2M4A2X8   A0A2M4A809   A0A2M4CRT4   J9KNQ8   A0A3L8DEM2   J9LFP1   X1X8T7   A0A2S2PT92   A0A0V0G616   J9LEU9   A0A2S2P2F5   A0A0N8NYW2   A0A2L2YFD0   J9M5Y6   A0A2J7Q3Q5   A0A0P8Y4M6   A0A2P8Z0K7   J9LBF3   A0A0N8P264   A0A0V0G8V1   A0A0P8Y6K1   A0A2P8XRQ1   X1X9T6   A0A023EZ18   A0A0P9A604   A0A0N8NZU6   A0A0P8Y5F3   A0A0P8ZWR4   J9KHI9   A0A0B4GMM2   A0A2S2NB32   J9LNA1   T1E1T8   A0A2J7QCQ8   A0A0A9WEG0   X1WLM1   A0A1B6I2W4   A0A2P8Z3H5   A0A0A9WI21   J9L6X2   A0A3N0CQC8   A0A023EX67   A0A2P8YI77   A0A023EXX8   X1WT72  

Pubmed

29403074    26369729    25474469    26823975    20470440    25527032    + More
26334808    30249741    17994087    26561354    25368161    24330624    25401762    24945155   

EMBL

PYGN01000510    PSN45119.1    PYGN01000451    PSN46127.1    PYGN01000064    PSN55609.1    + More
PYGN01000047    PSN56294.1    HE799691    CCH14900.1    PYGN01000203    PSN51319.1    PYGN01001382    PSN35227.1    PYGN01000020    PSN57453.1    PYGN01000324    PSN48495.1    PYGN01000070    PSN55417.1    PYGN01000219    PSN50892.1    PYGN01000502    PSN45243.1    PYGN01001004    PSN38555.1    PYGN01000580    PSN43876.1    AJVK01001578    PYGN01000078    PSN55011.1    PYGN01001494    PSN34463.1    PYGN01000082    PSN54842.1    PYGN01000613    PSN43351.1    PYGN01000629    PSN43121.1    GGMR01006433    MBY19052.1    PYGN01000287    PSN49259.1    GDAI01000742    JAI16861.1    GGMR01000126    MBY12745.1    GBBI01004263    JAC14449.1    GGMR01016675    MBY29294.1    GGMR01014652    MBY27271.1    PYGN01000119    PSN53667.1    GBRD01000202    JAG65619.1    GGMR01011466    MBY24085.1    GGMR01000301    MBY12920.1    PYGN01003402    PSN29545.1    GGFK01003183    MBW36504.1    PYGN01000107    PSN54137.1    GDHC01021627    JAP97001.1    FJ265555    ADI61823.1    GBBI01004198    JAC14514.1    GGFK01002192    MBW35513.1    GECU01011157    JAS96549.1    ABLF02027703    ABLF02061609    GGFK01002196    MBW35517.1    GBBI01004199    JAC14513.1    PYGN01000372    PSN47498.1    QOUI01000020    RCK67885.1    GBRD01017846    JAG47981.1    ABLF02026145    ABLF02026146    ABLF02042729    GBBI01004261    JAC14451.1    LBMM01005351    KMQ91586.1    KU311054    ALX81665.1    GGFL01003846    MBW68024.1    GBGD01000331    JAC88558.1    GGFK01001949    MBW35270.1    GGFK01005184    MBW38505.1    GGFJ01005240    MBW54381.1    GBRD01011073    JAG54751.1    GGFK01001798    MBW35119.1    GGFK01003613    MBW36934.1    GGFL01003845    MBW68023.1    ABLF02039015    QOIP01000009    RLU18885.1    ABLF02066124    ABLF02009557    ABLF02016497    ABLF02041313    ABLF02041567    ABLF02062088    GGMR01020071    MBY32690.1    GECL01002632    JAP03492.1    ABLF02019049    ABLF02067155    GGMR01010991    MBY23610.1    CH902961    KPU72636.1    IAAA01017079    LAA06070.1    ABLF02033384    NEVH01019065    PNF23216.1    CH902619    KPU76535.1    PYGN01000254    PSN50032.1    ABLF02003877    ABLF02042991    CH905131    KPU81852.1    GECL01001585    JAP04539.1    CH902653    KPU74858.1    PYGN01001465    PSN34679.1    ABLF02036907    ABLF02036915    ABLF02036922    ABLF02041419    GBBI01004262    JAC14450.1    CH902621    KPU81727.1    CH902657    KPU75308.1    CH904714    KPU81814.1    CH902626    KPU79149.1    ABLF02019047    AZNE01000717    KID80942.1    GGMR01001794    MBY14413.1    ABLF02013530    ABLF02013531    ABLF02013532    ABLF02043861    ABLF02057183    ABLF02067179    GALA01001775    JAA93077.1    NEVH01016288    PNF26362.1    GBHO01037470    JAG06134.1    ABLF02010115    ABLF02030763    GECU01026439    JAS81267.1    PYGN01000212    PSN51056.1    GBHO01037471    GBRD01009355    GBRD01009354    GDHC01014856    GDHC01007898    JAG06133.1    JAG56469.1    JAQ03773.1    JAQ10731.1    ABLF02018097    ABLF02043469    ABLF02056908    RAPH01000016    RNL65702.1    GAPW01000107    JAC13491.1    PYGN01000577    PSN43959.1    GAPW01000199    JAC13399.1    ABLF02020712    ABLF02020717    ABLF02054820   

Proteomes

UP000245037    UP000092462    UP000007819    UP000252770    UP000036403    UP000279307    + More
UP000007801    UP000235965    UP000031176    UP000279711   

PRIDE

D7F170   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2
PF05699   Dimer_Tnp_hAT

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR008906   HATC_C_dom       
IPR012337   RNaseH-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2P8YLJ1   A0A2P8YPE1   A0A2P8ZGH9   A0A2P8ZIH1   A0A060Q6A2   A0A2P8Z488   + More
A0A2P8XT91   A0A2P8ZLT6   A0A2P8YWA2   A0A2P8ZFZ0   A0A2P8Z313   A0A2P8YLY7   A0A2P8Y2S1   A0A2P8YHZ7   A0A1B0DRK3   A0A2P8ZET0   A0A2P8XR21   A0A2P8ZEA9   A0A2P8YGI5   A0A2P8YFW0   A0A2S2NQ16   A0A2P8YYC9   A0A0K8TRS6   A0A2S2N6G4   A0A023F0H0   A0A2S2PIT5   A0A2S2PCU1   A0A2P8ZAY7   A0A0K8TJE5   A0A2S2P3U1   A0A2S2N711   A0A2P8XC08   A0A2M4A6U1   A0A2P8ZCA4   A0A146KNZ7   D7F170   A0A023F0M0   A0A2M4A3Y0   A0A1B6JBJ4   J9L287   A0A2M4A3Z2   A0A023EZ68   A0A2P8YTB7   A0A367YPS2   A0A0K8S3X2   J9KUA2   A0A023F0F3   A0A0J7KMY2   A0A0U4HM41   A0A2M4CRR0   A0A069DWW0   A0A2M4A3H0   A0A2M4ACI4   A0A2M4BN64   A0A0K8SN56   A0A2M4A2X8   A0A2M4A809   A0A2M4CRT4   J9KNQ8   A0A3L8DEM2   J9LFP1   X1X8T7   A0A2S2PT92   A0A0V0G616   J9LEU9   A0A2S2P2F5   A0A0N8NYW2   A0A2L2YFD0   J9M5Y6   A0A2J7Q3Q5   A0A0P8Y4M6   A0A2P8Z0K7   J9LBF3   A0A0N8P264   A0A0V0G8V1   A0A0P8Y6K1   A0A2P8XRQ1   X1X9T6   A0A023EZ18   A0A0P9A604   A0A0N8NZU6   A0A0P8Y5F3   A0A0P8ZWR4   J9KHI9   A0A0B4GMM2   A0A2S2NB32   J9LNA1   T1E1T8   A0A2J7QCQ8   A0A0A9WEG0   X1WLM1   A0A1B6I2W4   A0A2P8Z3H5   A0A0A9WI21   J9L6X2   A0A3N0CQC8   A0A023EX67   A0A2P8YI77   A0A023EXX8   X1WT72  

KEGG

101739349    no KO assigned | (RefSeq) uncharacterized LOC101739349

GO

GO:0004519   GO:0003964   GO:0006355   GO:0046983  

Length:

468

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.06433

Exp number, first 60 AAs:

2.06291

Total prob of N-in:

0.10182

outside

1  -  468

 

 

Pi

409.560084

Theta

202.84177

Tajima's D

3.11989

CLR

0.218022

CSRT

0.984600769961502

Interpretation

Uncertain