Gene

KWMTBOMO01340

Pre Gene Modal

BGIBMGA009003

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]

Location

Bomo_Chr3(-):8253074-8254824      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.362 Nuclear   Reliability : 1.353

CDS

ATGTCTGCAGTATACGGAGGCGCGCGGTCCCCGCCCCCCGCGCACGGCCGCCCCCTCGCCGCCCCGCCGGGCCCGCCGCACGCCAGCCAGGTGCCGCGGGAGGCTGACTCCTTGCAGATGCTCCTTAGGAGATACCCGGTGATGTGGCAAGGTCTGTTGGCTCTGAAGAACGACTCTGCGGCCGTACAGATGCACTTCGTGGGCGGTAACCCTGGCGTGGCGGGCGACACGCTGTCTCGGCACCACGAGCAGGCCACGCCGCTGCTCCGTATCGCTCAGCGCATGCGCCTCGAGCCCGCGCAGCTGGACCAGGTCCACCGCAAGATGAAGATGGAAAACGAACATTGTATGTTGCTCGCATTACCATGCGGACGAGATCATATGGACGTCTTGCAGCAGTCTAACAACCTTACTGCTGGTTTTATAACGTACTTGCAACGTAAACAAGCCGCTGGAATTGTTAATATCGCTCCACCTGGCCATCATCAGGCAATGTTTACCGTTCACATATTTCCTTCATGCGATTTCGCAAACGAAAACCTGAATCGCATAGCGCCCGACTTGATGCATCGTGTCGCCGACATTGCGCATTTGTTAATTGTCATCGCAACTGTGTGA

Protein

MSAVYGGARSPPPAHGRPLAAPPGPPHASQVPREADSLQMLLRRYPVMWQGLLALKNDSAAVQMHFVGGNPGVAGDTLSRHHEQATPLLRIAQRMRLEPAQLDQVHRKMKMENEHCMLLALPCGRDHMDVLQQSNNLTAGFITYLQRKQAAGIVNIAPPGHHQAMFTVHIFPSCDFANENLNRIAPDLMHRVADIAHLLIVIATV

Uniprot

H9JHK5   A0A2H1WGY7   A0A1E1WFY3   A0A2W1C186   A0A194RMJ1   A0A212FH59   + More
A0A194PUG8   A0A1B0CA31   A0A1B6KAU7   A0A2A3E9K8   A0A1B0DR41   A0A1B0REL4   A0A182KZ42   A0A0A9WBB1   A0A182G8W6   A0A1B6DNN1   A0A1B6D8R2   A0A1B6E9Y0   A0A1B6D7H4   A0A1Y1MNY4   A0A088A6Q3   A0A2J7Q937   A0A2J7Q932   K7IRP5   A0A232ESN1   A0A0M9A9M3   E0VE07   A0A182G6I8   A0A1B6FUY1   A0A067R5I5   A0A182Y6A2   B0W710   A0A182F557   T1IFC0   Q16VU7   A0A1S4FMM6   W5J954   E9GPR5   W4VRA4   A0A182UZJ7   A0A182T4Q2   A0A084VSR8   A0A182J2U4   A0A1B6G8L0   A0A1Y9GKD0   A0A293M5E4   T1J4C3   A0A336LLB9   A0A310SCZ7   A0A293MAL5   A0A0K8VFZ0   A0A034VZY0   A0A224YW08   A0A2P8Y518   A0A0J7L6Z3   E2A976   E2BUB2   A0A1Z5L7K2   A0A182Q6X9   A0A2R7W5Z9   A0A2R7W6I8   A0A0K8WIZ4   A0A034W511   A0A0K8U5C2   A0A3L8DCL0   A0A224XHC0   A0A026WS22   Q1WWE0   A0A182LW95   A0A182RWR0   A0A182W8R4   A0A0T6BAV3   A0A195B697   A0A147BCR4   A0A131XZ99   A0A182NP23   A0A182JW56   A0A195C3K3   A0A1I8NIP2   A0A1I8NIP3   D6WWB2   A0A151XJZ9   A0A0P6HFX0   A0A182P7Z7   T1PA64   A0A164KPC2   A0A131Z7P5   A0A131YJB0   A0A0P5LW22   A0A195EKP7   A0A195FSC1   A7UV52   F4WCD7   A0A158NRE2   A0A0P5AH96   A0A0P5K6B8   A0A0P5JPT8   A0A0P4ZQK9   A0A0P6HAP2   A0A0N8AU67  

Pubmed

19121390    28756777    26354079    22118469    20966253    25401762    + More
26483478    28004739    20075255    28648823    20566863    24845553    25244985    17510324    20920257    23761445    21292972    24438588    25348373    28797301    29403074    20798317    28528879    30249741    24508170    29652888    25315136    18362917    19820115    26830274    12364791    21719571    21347285   

EMBL

BABH01012733    BABH01012734    BABH01012735    BABH01012736    ODYU01008601    SOQ52329.1    + More
GDQN01005134    JAT85920.1    KZ149894    PZC78890.1    KQ459989    KPJ18742.1    AGBW02008559    OWR53043.1    KQ459591    KPI96967.1    AJWK01003195    AJWK01003196    GEBQ01031663    JAT08314.1    KZ288312    PBC28408.1    AJVK01008905    AJVK01008906    AJVK01008907    KM264383    AKE98363.1    GBHO01039791    JAG03813.1    JXUM01048580    JXUM01048581    KQ561568    KXJ78134.1    GEDC01010012    JAS27286.1    GEDC01015246    JAS22052.1    GEDC01002634    JAS34664.1    GEDC01015667    JAS21631.1    GEZM01027268    JAV86788.1    NEVH01016943    PNF25099.1    PNF25100.1    NNAY01002394    OXU21365.1    KQ435709    KOX80030.1    DS235088    EEB11613.1    JXUM01007573    JXUM01007574    KQ560243    KXJ83624.1    GECZ01015761    JAS54008.1    KK852871    KDR14584.1    DS231851    EDS37284.1    ACPB03008176    ACPB03008177    CH477580    EAT38712.1    ADMH02002089    ETN59395.1    GL732557    EFX78544.1    GANO01003950    JAB55921.1    ATLV01016139    ATLV01016140    KE525057    KFB41012.1    GECZ01010993    JAS58776.1    APCN01001659    APCN01001660    GFWV01010539    MAA35268.1    JH431842    UFQS01000003    UFQT01000003    SSW96760.1    SSX17147.1    KQ776753    OAD52187.1    GFWV01013264    MAA37993.1    GDHF01028338    GDHF01020690    GDHF01020066    GDHF01014561    JAI23976.1    JAI31624.1    JAI32248.1    JAI37753.1    GAKP01010096    JAC48856.1    GFPF01009969    MAA21115.1    PYGN01000923    PSN39346.1    LBMM01000455    KMQ98299.1    GL437711    EFN70061.1    GL450619    EFN80740.1    GFJQ02003577    JAW03393.1    AXCN02001964    KK854317    PTY14581.1    PTY14580.1    GDHF01001252    JAI51062.1    GAKP01010095    GAKP01010094    JAC48858.1    GDHF01030452    JAI21862.1    QOIP01000009    RLU18215.1    GFTR01008995    JAW07431.1    KK107119    EZA58827.1    BT024966    ABE01196.1    AXCM01000709    LJIG01002470    KRT84470.1    KQ976582    KYM79780.1    GEGO01006853    JAR88551.1    GEFM01004208    JAP71588.1    KQ978292    KYM95444.1    KQ971361    EFA08686.2    KQ982052    KYQ60661.1    GDIQ01029197    JAN65540.1    KA645030    AFP59659.1    LRGB01003275    KZS03435.1    GEDV01001178    JAP87379.1    GEDV01009932    JAP78625.1    GDIQ01164545    JAK87180.1    KQ978739    KYN28813.1    KQ981305    KYN42799.1    AAAB01008980    EDO63446.1    GL888070    EGI68117.1    ADTU01001951    GDIP01198859    JAJ24543.1    GDIQ01188535    JAK63190.1    GDIQ01196685    GDIQ01096666    JAK55040.1    GDIP01213157    JAJ10245.1    GDIQ01031546    JAN63191.1    GDIQ01242523    JAK09202.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000092461    UP000242457    + More
UP000092462    UP000075882    UP000069940    UP000249989    UP000005203    UP000235965    UP000002358    UP000215335    UP000053105    UP000009046    UP000027135    UP000076408    UP000002320    UP000069272    UP000015103    UP000008820    UP000000673    UP000000305    UP000075903    UP000075901    UP000030765    UP000075880    UP000075840    UP000245037    UP000036403    UP000000311    UP000008237    UP000075886    UP000279307    UP000053097    UP000075883    UP000075900    UP000075920    UP000078540    UP000075884    UP000075881    UP000078542    UP000095301    UP000007266    UP000075809    UP000075885    UP000076858    UP000078492    UP000078541    UP000007062    UP000007755    UP000005205   

PRIDE

H9JHK5    Q1WWE0   

Pfam

PF07744   SPOC        + More
PF00076   RRM_1
PF00096   zf-C2H2
PF00621   RhoGEF

Interpro

IPR012921   SPOC_C        + More
IPR035979   RBD_domain_sf       
IPR016194   SPOC-like_C_dom_sf       
IPR010912   SPOC_met       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR034174   SHARP_RRM3       
IPR000504   RRM_dom       
IPR034175   SHARP_RRM4       
IPR034173   SHARP_RRM2       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR034172   SHARP_RRM1       
IPR035899   DBL_dom_sf       
IPR000219   DH-domain       
IPR011993   PH-like_dom_sf       

SUPFAM

SSF100939   SSF100939        + More
SSF54928   SSF54928       
SSF57667   SSF57667       
SSF48065   SSF48065       

Gene 3D

2.40.290.10     3.30.70.330     1.20.900.10     2.30.29.30    

CDD

cd12350  RRM3_SHARP
cd12349  RRM2_SHARP
cd12351  RRM4_SHARP
cd12348  RRM1_SHARP

ProteinModelPortal

H9JHK5   A0A2H1WGY7   A0A1E1WFY3   A0A2W1C186   A0A194RMJ1   A0A212FH59   + More
A0A194PUG8   A0A1B0CA31   A0A1B6KAU7   A0A2A3E9K8   A0A1B0DR41   A0A1B0REL4   A0A182KZ42   A0A0A9WBB1   A0A182G8W6   A0A1B6DNN1   A0A1B6D8R2   A0A1B6E9Y0   A0A1B6D7H4   A0A1Y1MNY4   A0A088A6Q3   A0A2J7Q937   A0A2J7Q932   K7IRP5   A0A232ESN1   A0A0M9A9M3   E0VE07   A0A182G6I8   A0A1B6FUY1   A0A067R5I5   A0A182Y6A2   B0W710   A0A182F557   T1IFC0   Q16VU7   A0A1S4FMM6   W5J954   E9GPR5   W4VRA4   A0A182UZJ7   A0A182T4Q2   A0A084VSR8   A0A182J2U4   A0A1B6G8L0   A0A1Y9GKD0   A0A293M5E4   T1J4C3   A0A336LLB9   A0A310SCZ7   A0A293MAL5   A0A0K8VFZ0   A0A034VZY0   A0A224YW08   A0A2P8Y518   A0A0J7L6Z3   E2A976   E2BUB2   A0A1Z5L7K2   A0A182Q6X9   A0A2R7W5Z9   A0A2R7W6I8   A0A0K8WIZ4   A0A034W511   A0A0K8U5C2   A0A3L8DCL0   A0A224XHC0   A0A026WS22   Q1WWE0   A0A182LW95   A0A182RWR0   A0A182W8R4   A0A0T6BAV3   A0A195B697   A0A147BCR4   A0A131XZ99   A0A182NP23   A0A182JW56   A0A195C3K3   A0A1I8NIP2   A0A1I8NIP3   D6WWB2   A0A151XJZ9   A0A0P6HFX0   A0A182P7Z7   T1PA64   A0A164KPC2   A0A131Z7P5   A0A131YJB0   A0A0P5LW22   A0A195EKP7   A0A195FSC1   A7UV52   F4WCD7   A0A158NRE2   A0A0P5AH96   A0A0P5K6B8   A0A0P5JPT8   A0A0P4ZQK9   A0A0P6HAP2   A0A0N8AU67  

PDB

2RT5     E-value=5.01565e-46,     Score=461

KEGG

101736421    no KO assigned | (RefSeq) protein split ends

GO

GO:0003723   GO:0003676   GO:0005634   GO:0005089   GO:0035023   GO:0016021  

Length:

205

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01365

Exp number, first 60 AAs:

0.00105

Total prob of N-in:

0.08568

outside

1  -  205

 

 

Pi

308.881169

Theta

231.362472

Tajima's D

1.219997

CLR

0

CSRT

0.715214239288036

Interpretation

Uncertain