Silkworm Genome Informatics Database

Gene

KWMTBOMO01331

Pre Gene Modal

BGIBMGA008884

Annotation

PREDICTED:_pre-mRNA_3'_end_processing_protein_WDR33-like_[Papilio_xuthus]

Location

Bomo_Chr3(+):8074175-8077041 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.981

CDS

ATGGATTTCGGACATCCTCACCAGAACATGGGTATGCCCCCGCCGGGCATGGGTATGATGGGTCCACCCATGGGCCCGCCACCGGGGCGGAACAACATTCGCCATAACTTTAGACCTTTCAACTACCAGATGCGATTTCCACCACAGGGCCCTCTTAATATGACACAAGATGATTTCGACGGTAAACGTTTGCGTAAATCAGTAATGCGTAAAACTGTAGATTATAACGCGGCTATTATAAAAGCATTAGAATGCCGCGTTTGGCAAAGAGACTGGCGCGATAGACATGCGCTTCAACCGGACGCTATGTACACCCCTGACCTTTTACCTCCTCCTTCATATCCTGATAATCCAATAAATGCCGTTACAACACGTTTTGTTAAAACAGCCACTAATAAAATGAGATGTCCTATCTTTGCTGTAGCATGGACTCCTGAAGGTAGAAGATTAATAACAGGTGCTTCCTCAGGAGAATTTACACTATGGAATGGATTAACATTTAACTTTGAAACCATTCTCCAAGCTCATGACTCACCAGTAAGATCAATGGTTTGGTCACATGGAGAAGGCTGGATGGTAACTGGAGACCATTCAGGATTTATAAAATACTGGCAGAGTAATATGAATAATGTTAAAATGTATCAAGCTCATAAAGAAGCTGTAAGAGGAATCAGTTTCAGCCCTAGTGATTCTAAAATAGTAACATGTTCAGATGATGGCACGCTCAGGATATTTGATTTCTATAGATGTCAAGAAGAAAGAATATTGAGAGGTCATGGTGCCGATGTGAAATGTGTTCAATGGCATCCAACTAAAGCACTCATTGTATCAGGCAGTAAAGACAACCAACAGCCTATTAAATTATGGGATCCAAAATCAGGGACAGCATTGTCAACTCTTCATGCTCATAAATCTACAGTAATGGACTTAAAGTGGAATGATAATGGTAACTGGCTAATAACTGCATCCCGTGATCATTTACTTAAATTATTTGACATACGTAAGCTAGGGTCTGAACTGCAAATTTTTAGAGGACACAAAAAGGAAGCTTCCAGTGTGGCATGGCATCCACATCATGAAGGCTTATTTTGTTCTGGGGGATCTGATGGAGCTATTTTATTTTGGAATGTAGGTACTGATAAAGAAGTTGGTTGTATTGAAGGAGCACATGAATCTATTGTCTGGACAATGGCTTGGCATCCACTGGGTCATATATTGTGCTCAGGTTCAAATGACCATACTTCTAAATTTTGGACTCGGAACCGTCCAGGTGACCTTATGAGAGACAAATATAATTTGAATACCTTACCTCCCGGAGTTCAAGATGATCAAGACTTGGAAGAACCTACTACAATTCCTGGTATGGGACCTGAAGATAAAGTAGAAATATTTTCCTCTGATACAGATAAAGTTATTCCTGGGTTAGATTTAGATACTACATTTGTTCCTATGGAATTTGAGAAGAAAGTTAAAAAAGTTCCATATAGTAAACCTATTCCTCGAAACTTCCAAGCCCAATGGAATCATGCTCCTAGTGCTGAAGAATCTTCTACAGAAGTCCTGAGCCAGGCTCTAGTTGAATCAGTCCCAGGCTCCATACCACTTGAACACATCAATCCATCCGCCATATTCATTTATGGAAAATTAATTGGAGTAGAACCTGGGTCTAAACTTGAGAAAGCAATAACTGAAGGACATGTTTCTCTTAGAAAATATATAGCTAGTGGGGAACTAGAAGAGTTGCATGATGTTATGCCTCATTTAGAAGATGATGCCGATGAAGAAAACTTTCAACCATTTGAATACCCTGACCAAAATGAAAATGAAAATGGTGATGAAGATGAACAAAATAACAAAGAAGATTATGAACGAGATGAAGAATACTATGATAATGATATGGATAAAAATGGAACCCATGATTCAGAAAAAACTGCAAAATATAATAATGGCCCAGACATGTCTAACATGCAACAGGTGACTAATATGCCACTAGTTATGAATAACATGATGAGACCCCCTATGGGTATGGGACCAATTAGACCCCCTATGAGACCACCCCTTGGTTCTATGCACATGCCTCCTCCACACATGTCAGGCATGCCACCCATGGGTGCTATGCCACCCTTAGGAAATATGCCTCCAATGGGAAATTTGCCACCAAGAGGTAGTATGCCACCAATGGGAAATATGCCTCCAATGGGAAATATGCCCCCAATGGGAAATATGCCCCCAATGGGTAACATGCCACCAATGGGAGTCATGCCACCCTTGGGAAACTTGCCACCACGGTCTTCCTTTAATGACAATGGTTACAATAAATCTCAGTTTGATTCTAATTATGAAAATCAGCAATATTCACAAAATGATGAAGAATATAATGAGGAAGAATCTTATGATCAAAATTATGAAGAAGAAAGTAATTACAATGAAGACGAGAAAGGTGATGAAGGATTTTCTAGAAATCAGCGATGGGAGCATGGTTATAGGGGAAGGACTCGTGTTAGAGGTCGAGGTATGAATGGTTATGGAGGACGTGGTAATCGACGCGGCAACAATGGCTCCAGAGGATCACCACGAAATCGACGAGGTGGTGGTCATAACAGAAACTTTAGACGAGGCAGTAAATCCGTTTCAAATTAG

Protein

MDFGHPHQNMGMPPPGMGMMGPPMGPPPGRNNIRHNFRPFNYQMRFPPQGPLNMTQDDFDGKRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQPDAMYTPDLLPPPSYPDNPINAVTTRFVKTATNKMRCPIFAVAWTPEGRRLITGASSGEFTLWNGLTFNFETILQAHDSPVRSMVWSHGEGWMVTGDHSGFIKYWQSNMNNVKMYQAHKEAVRGISFSPSDSKIVTCSDDGTLRIFDFYRCQEERILRGHGADVKCVQWHPTKALIVSGSKDNQQPIKLWDPKSGTALSTLHAHKSTVMDLKWNDNGNWLITASRDHLLKLFDIRKLGSELQIFRGHKKEASSVAWHPHHEGLFCSGGSDGAILFWNVGTDKEVGCIEGAHESIVWTMAWHPLGHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPPGVQDDQDLEEPTTIPGMGPEDKVEIFSSDTDKVIPGLDLDTTFVPMEFEKKVKKVPYSKPIPRNFQAQWNHAPSAEESSTEVLSQALVESVPGSIPLEHINPSAIFIYGKLIGVEPGSKLEKAITEGHVSLRKYIASGELEELHDVMPHLEDDADEENFQPFEYPDQNENENGDEDEQNNKEDYERDEEYYDNDMDKNGTHDSEKTAKYNNGPDMSNMQQVTNMPLVMNNMMRPPMGMGPIRPPMRPPLGSMHMPPPHMSGMPPMGAMPPLGNMPPMGNLPPRGSMPPMGNMPPMGNMPPMGNMPPMGNMPPMGVMPPLGNLPPRSSFNDNGYNKSQFDSNYENQQYSQNDEEYNEEESYDQNYEEESNYNEDEKGDEGFSRNQRWEHGYRGRTRVRGRGMNGYGGRGNRRGNNGSRGSPRNRRGGGHNRNFRRGSKSVSN

Uniprot

H9JH87 A0A194PW42

Pubmed

19121390 26354079

EMBL

BABH01012756 KQ459591 KPI96979.1

Proteomes

UP000005204 UP000053268

PRIDE

H9JH87

Pfam

PF00400 WD40

Interpro

IPR017986   WD40_repeat_dom        + More
IPR001680   WD40_repeat
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR036322   WD40_repeat_dom_sf

SUPFAM

SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

H9JH87 A0A194PW42

PDB

6DNH E-value=0, Score=1722

KEGG

101737123 K15542 polyadenylation factor subunit 2 | (RefSeq) protein smoothened-like

PATHWAY

03015 mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0005515 GO:0016705 GO:0020037 GO:0005622 GO:0016820 GO:0016042 GO:0005634 GO:0006334 GO:0003779 GO:0016021

Length:

879

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000970000000000002

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.00004

outside

1 - 879

Pi

205.462314

Theta

207.498849

Tajima's D

0.051931

CLR

187.316843

CSRT

0.388430578471076

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics