SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01325
Pre Gene Modal
BGIBMGA008882
Annotation
hypothetical_protein_KGM_18482_[Danaus_plexippus]
Location in the cell
PlasmaMembrane   Reliability : 4.809
 

Sequence

CDS
ATGCAAACTTTGTATTTCACATTGGCACTTTTGAATGACTTATTTGGAAATAATGAGCCAACACCATCAGAGAAGCCTTTAATAAGACGCATAAAAGATATATTATTTAGTGCCTTGGCTTTTCCACTGTCTATGTTTGTTGGTATTACATTTTGGGGCATATACGCCATCGACAGAGAGCTCATTTTACCAAGAAGCTTAGACCCATATTTTCCTACATGGCTGAATCATGTAATGCACACAAACATAATGGCATTTATTCTAATTGATTTGTTAACATCCTTCAGAATGTATCCTAGGAAGAAAATTGGACTATCTGTACTTTGTACATATATGTTGTGTTACATGGTTTGGATTCATGTAATATATTTTAAAACTGGAAGTTGGGTGTATCCTATACTGAATATACTCAACTGGCCCCTAAGAGTAGTGTTCTATCTAGTCTGTCTTGGATTAGTTTGTAGTCTCTACAGCTTAGGCGAAAAATTTAACAAGTTGGTTTGGTCTAAAGAAGTAGAACAAACTGTTAAATCTGGAAAGAAAAAAGCAAAATAA
Protein
MQTLYFTLALLNDLFGNNEPTPSEKPLIRRIKDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILIDLLTSFRMYPRKKIGLSVLCTYMLCYMVWIHVIYFKTGSWVYPILNILNWPLRVVFYLVCLGLVCSLYSLGEKFNKLVWSKEVEQTVKSGKKKAK

Summary

EMBL
BABH01012762    BABH01012763    BABH01012764    ODYU01000688    SOQ35882.1    AGBW02013301    + More
OWR43635.1    JTDY01001898    KOB72587.1    KQ459989    KPJ18757.1    NWSH01000444    PCG76366.1    AK403186    BAM19615.1    GAIX01003691    JAA88869.1    KZ149894    PZC78906.1    KQ971361    EFA08684.2    KK852428    KDR24056.1    NEVH01016943    PNF25057.1    JXUM01031224    KQ560913    KXJ80373.1    JXUM01093221    KQ564042    KXJ72878.1    GAPW01003607    JAC09991.1    GEZM01054630    GEZM01054629    JAV73515.1    GEZM01054631    GEZM01054628    JAV73516.1    GFDL01008285    JAV26760.1    DS231816    EDS37619.1    CH477401    EAT41703.1    GFDL01002386    JAV32659.1    GBYB01006820    JAG76587.1    GAKP01006959    GAKP01006958    GAKP01006956    JAC51996.1    APGK01058767    KB741291    KB631759    ENN70612.1    ERL85849.1    APCN01000708    AAAB01008944    EAA10218.3    GAKP01006957    JAC51995.1    KA647705    AFP62334.1    GFDL01008187    JAV26858.1    CH902624    KPU74517.1    EDV33529.1    AXCM01003295    ATLV01023406    KE525343    KFB49112.1    AXCN02002069    KPU74516.1    CH963857    KRF98391.1    CP012523    ALC38553.1    GFDG01000826    JAV17973.1    GFDG01000954    JAV17845.1    KRF98392.1    EDW76138.1    GGFJ01008528    MBW57669.1    GGFL01002075    MBW66253.1    ADMH02000838    ETN64905.1    CH954177    KQS69920.1    CVRI01000055    CRL01466.1    KQS69919.1    KQS69921.1    EDV57208.1    CRL01465.1    EZ422395    ADD18671.1    JXJN01003674    GDHF01013458    JAI38856.1    CM000157    KRJ97030.1    GGFL01002076    MBW66254.1    BT029599    ABL75658.1    AE014134    AY060615    AAF51516.1    AAL28163.1    BT120126    ABV53595.1    ADB46407.1    EDW87116.1    CM002910    KMY87283.1    KMY87285.1    LJIG01002005    KRT84935.1    GDHF01010193    JAI42121.1    KMY87284.1    AAF51515.1    CH480829    EDW45374.1    CM000361    EDX03202.1    KMY87282.1    BT099514    ACU27356.1    CH933807    EDW11232.1    KRG02585.1    KRJ97031.1    CH479184    EDW36865.1    CH379058    EAL34525.2   
Pfam
PF14775   NYD-SP28_assoc        + More
PF04750   Far-17a_AIG1
PF14772   NYD-SP28
Interpro
IPR006838   Far-17a_AIG1        + More
IPR039505   DRC1/2_N       
IPR029440   DRC1_C       
IPR039750   DRC1/DRC2       

Ontologies

Topology

Length:
184
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
86.24154
Exp number, first 60 AAs:
22.69445
Total prob of N-in:
0.99057
POSSIBLE N-term signal
sequence
inside
1  -  34
TMhelix
35  -  57
outside
58  -  76
TMhelix
77  -  95
inside
96  -  101
TMhelix
102  -  124
outside
125  -  138
TMhelix
139  -  160
inside
161  -  184
 
 

Population Genetic Test Statistics

Pi
167.164299
Theta
164.714612
Tajima's D
0.241817
CLR
241.818763
CSRT
0.443177841107945
Interpretation
Uncertain
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