Gene

KWMTBOMO01320  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008881

Annotation

ribosomal_protein_L11_[Bombyx_mori]

Location

Bomo_Chr3(+):7983485-7987410      View in EpiBrowser

Full name

60S ribosomal protein L11      

Location in the cell

Cytoplasmic   Reliability : 2.301

CDS

ATGGCGCGTGTACCACCGCCTGCGTTGAAGAAAGATAAAAAGGAGAAGAAGGTTCCGAAGGATAATTCTAAAAATGTAATGCGGAATCTTCATATCAGAAAGCTTTGCTTGAACATATGTGTTGGTGAATCCGGTGACAGGCTGACTCGTGCCGCCAAGGTGTTGGAGCAACTCACAGGACAACAGCCTGTATTTTCCAAGGCTAGGTATACAGTGCGGTCTTTTGGTATCCGTCGTAATGAAAAGATTGCTGTCCATTGTACAGTCCGAGGAGCTAAAGCAGAAGAAATCCTTGAGAGGGGTTTGAAAGTCAGAGAATATGAATTGCGGCGTGACAACTTCTCCGCCACGGGTAATTTTGGCTTCGGTATTCAAGAACACATTGACTTGGGTATCAAGTACGATCCCTCAATTGGAATTTATGGACTGGACTTTTACGTCGTACTTGGCCGGCCAGGTTTCAACGTAGCACACAGAAGGCGTAAGACAGGAAAAGTGGGATTTCCCCACCGCCTCACAAAGGAAGATGCTATGAAGTGGTTCCAACAGAAATATGATGGTATCATACTTAATAGCAAAGCAAAGTAA

Protein

MARVPPPALKKDKKEKKVPKDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDGIILNSKAK

Description

Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel.

Subunit

Component of the large ribosomal subunit (By similarity). Interacts with Fmr1 to form the RNA-induced silencing complex (RISC), a ribonucleoprotein (RNP) complex involved in translation regulation, other components of the complex are RpL5, Rm62, AGO2 and Dcr-1 (PubMed:12368261).

Similarity

Belongs to the universal ribosomal protein uL5 family.

Keywords

3D-structure   Complete proteome   Cytoplasm   Nucleus   Reference proteome   Ribonucleoprotein   Ribosomal protein   RNA-binding   rRNA-binding  

Feature

chain  60S ribosomal protein L11

Uniprot

Q5UAS8   H9JH84   I4DIR1   E7DZ01   S4PBC9   A0A194RMW5   + More
A0A2W1BC20   A0A2A4JXE9   A0A2H1V4V5   A0A3G1T1J8   D1LYK2   G0ZEB8   D6WW88   Q4GXJ7   A0A0K8TR34   A0A034VVM3   A0A1A9WAD4   W8C038   A0A0C9QL70   A0A1Y1KT19   A0A0K2QK66   A0A1B0FL14   A0A1A9YJN7   A0A1A9UYE3   A0A1B0ARL8   A0A1A9ZRC6   J3JV68   T1PEX6   A0A0K8WIM5   A0A1B0ESU1   A0A0M4E7J9   B3MGG1   A0A1I8NMT8   A0A1L8EF71   A0A194PUA0   B4J622   A8CAG0   A0A1L8DRN6   A0A023EIH3   B4LNW5   A0A3B0J327   B5DUR4   B4GIM7   A0A1L8DS09   A0A0Q9WFK3   B0X194   B4KME8   A0A0Q9XIP5   A0A1Q3F9D3   A0A1W4WVQ0   Q5MIR0   A0A1L8DRW6   Q16KL2   A0A0L0C5G5   U5EXU7   B6U3W3   Q4GXJ8   A0A2M3YXE5   A0A2M3ZYT7   A0A182FKJ3   A0A182MVK4   A0A182YB37   A0A182WDH4   A0A0C9Q4H7   A0A182NZK8   A0A182QFW2   A0A171B8E9   A0A2M3ZF78   A0A182JJC1   A0A182N2D0   B6DDS7   A0A182JNJ3   Q06DH4   D1M7Y0   Q1HRK1   C4N198   B4MRQ7   A0A232ESU2   K7IRP4   A6YPT0   D3TS85   Q4GXJ6   A0A3B0JQN9   A0A0V0G2Q0   A0A069DQE7   A0A182VEB6   A0A182UBA1   A0A182X5L0   A0A182KL51   Q7QHF9   A0A182HWD9   A0A0B4LGZ5   B4PB83   B3NJV1   B4QE29   P46222   A0A026WUH2   A0A0L7QW18   V9IKH6   S4S5K2  

Pubmed

19121390    22651552    23622113    26354079    28756777    18362917    + More
19820115    26369729    25348373    24495485    28004739    26168724    22516182    23537049    25315136    17994087    17760985    24945155    26483478    15632085    17244540    17510324    26108605    18937034    25244985    19178717    20920257    23761445    17244545    17204158    19576987    28648823    20075255    18207082    20353571    26334808    20966253    12364791    14747013    17210077    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    22936249    7893752    12537569    12368261    23636399    24508170   

EMBL

AY769280    AAV34822.1    BABH01012765    AK401179    BAM17801.1    HQ424704    + More
ADT80648.1    GAIX01005972    JAA86588.1    KQ459989    KPJ18759.1    KZ150536    PZC70586.1    NWSH01000444    PCG76368.1    ODYU01000688    SOQ35880.1    MG992422    AXY94860.1    GU084276    ACY95309.1    JF264996    AEL28827.1    KQ971361    EFA08168.1    AM049026    CAJ17262.1    GDAI01001218    JAI16385.1    GAKP01013374    JAC45578.1    GAMC01001543    JAC05013.1    GBYB01001317    JAG71084.1    GEZM01074445    JAV64549.1    LC057254    BAS02547.1    CCAG010020342    JXJN01002477    APGK01035752    BT127135    KB740928    KB630163    KB630856    KB631023    AEE62097.1    ENN77943.1    ERL83441.1    ERL83907.1    ERL84014.1    KA647347    AFP61976.1    GDHF01001311    JAI51003.1    AJWK01005593    CP012524    ALC42691.1    CH902619    EDV35704.1    GFDG01001437    JAV17362.1    KQ459591    KPI96986.1    CH916367    EDW01880.1    EU045352    ABV44749.1    GFDF01005013    JAV09071.1    JXUM01135370    JXUM01135371    JXUM01135372    GAPW01004862    KQ568261    JAC08736.1    KXJ69073.1    CH940648    EDW61134.1    OUUW01000001    SPP75675.1    CH674335    EDY71633.1    CH479183    EDW36347.1    GFDF01004816    JAV09268.1    KRF79803.1    DS232256    EDS38543.1    CH933808    EDW09836.1    KRG04930.1    GFDL01010889    JAV24156.1    AY826150    AAV90722.1    GFDF01004994    JAV09090.1    CH477951    EAT34850.1    JRES01000890    KNC27525.1    GANO01002357    JAB57514.1    EU971928    ACG44046.1    AM049025    CAJ17261.1    GGFM01000186    MBW20937.1    GGFK01000350    MBW33671.1    AXCM01000599    GBYB01008973    JAG78740.1    AXCN02001727    GEMB01000148    JAS02965.1    GGFM01006390    MBW27141.1    EU934287    ADMH02002090    ACI30065.1    ETN59373.1    DQ910351    ABI83773.1    GU120404    ACY71254.1    DQ440093    ABF18126.1    EZ048871    ACN69163.1    CH963850    EDW74796.1    NNAY01002394    OXU21366.1    EF639091    ABR27976.1    EZ424287    ADD20563.1    AM049027    CAJ17263.1    SPP75676.1    GECL01003727    JAP02397.1    GBGD01003047    JAC85842.1    AAAB01008816    EAA05139.3    APCN01001485    AE013599    AHN56409.1    CM000158    EDW91496.1    CH954179    EDV55210.1    CM000362    CM002911    EDX07816.1    KMY95118.1    U15643    AY094790    KK107102    EZA59603.1    KQ414716    KOC62828.1    JR049563    AEY61001.1    HQ828077    HQ828081    JN699055    AET36542.1    AET74064.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000007266    UP000091820    UP000092444    + More
UP000092443    UP000078200    UP000092460    UP000092445    UP000019118    UP000030742    UP000095301    UP000092461    UP000092553    UP000007801    UP000095300    UP000053268    UP000001070    UP000069940    UP000249989    UP000008792    UP000268350    UP000001819    UP000008744    UP000002320    UP000009192    UP000192223    UP000008820    UP000037069    UP000069272    UP000075883    UP000076408    UP000075920    UP000075885    UP000075886    UP000075880    UP000075884    UP000000673    UP000075881    UP000075900    UP000007798    UP000215335    UP000002358    UP000075903    UP000075902    UP000076407    UP000075882    UP000007062    UP000075840    UP000000803    UP000002282    UP000008711    UP000000304    UP000053097    UP000053825   

PRIDE

Q5UAS8    H9JH84    P46222   

Pfam

PF00281   Ribosomal_L5        + More
PF00673   Ribosomal_L5_C

Interpro

IPR031309   Ribosomal_L5_C        + More
IPR031310   Ribosomal_L5_N       
IPR020929   Ribosomal_L5_CS       
IPR002132   Ribosomal_L5       
IPR022803   Ribosomal_L5_dom_sf       

SUPFAM

SSF55282   SSF55282       

Gene 3D

3.30.1440.10    

ProteinModelPortal

Q5UAS8   H9JH84   I4DIR1   E7DZ01   S4PBC9   A0A194RMW5   + More
A0A2W1BC20   A0A2A4JXE9   A0A2H1V4V5   A0A3G1T1J8   D1LYK2   G0ZEB8   D6WW88   Q4GXJ7   A0A0K8TR34   A0A034VVM3   A0A1A9WAD4   W8C038   A0A0C9QL70   A0A1Y1KT19   A0A0K2QK66   A0A1B0FL14   A0A1A9YJN7   A0A1A9UYE3   A0A1B0ARL8   A0A1A9ZRC6   J3JV68   T1PEX6   A0A0K8WIM5   A0A1B0ESU1   A0A0M4E7J9   B3MGG1   A0A1I8NMT8   A0A1L8EF71   A0A194PUA0   B4J622   A8CAG0   A0A1L8DRN6   A0A023EIH3   B4LNW5   A0A3B0J327   B5DUR4   B4GIM7   A0A1L8DS09   A0A0Q9WFK3   B0X194   B4KME8   A0A0Q9XIP5   A0A1Q3F9D3   A0A1W4WVQ0   Q5MIR0   A0A1L8DRW6   Q16KL2   A0A0L0C5G5   U5EXU7   B6U3W3   Q4GXJ8   A0A2M3YXE5   A0A2M3ZYT7   A0A182FKJ3   A0A182MVK4   A0A182YB37   A0A182WDH4   A0A0C9Q4H7   A0A182NZK8   A0A182QFW2   A0A171B8E9   A0A2M3ZF78   A0A182JJC1   A0A182N2D0   B6DDS7   A0A182JNJ3   Q06DH4   D1M7Y0   Q1HRK1   C4N198   B4MRQ7   A0A232ESU2   K7IRP4   A6YPT0   D3TS85   Q4GXJ6   A0A3B0JQN9   A0A0V0G2Q0   A0A069DQE7   A0A182VEB6   A0A182UBA1   A0A182X5L0   A0A182KL51   Q7QHF9   A0A182HWD9   A0A0B4LGZ5   B4PB83   B3NJV1   B4QE29   P46222   A0A026WUH2   A0A0L7QW18   V9IKH6   S4S5K2  

PDB

4V6W     E-value=9.95339e-89,     Score=829

KEGG

692693    K02868 large subunit ribosomal protein L11e | (RefSeq) RpL11; ribosomal protein L11

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0022625   GO:0000027   GO:0000228   GO:0005730   GO:0005703   GO:0002181   GO:0022626   GO:0005737   GO:0019843   GO:0005622   GO:0016820   GO:0016042   GO:0005634   GO:0006334   GO:0003779   GO:0016021  

PANTHER

PTHR11994  

Subcellular location

Nucleus  
Cytoplasm  

Length:

195

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.44038

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04507

outside

1  -  195

 

 

Pi

215.922165

Theta

172.615262

Tajima's D

0.767341

CLR

0.142026

CSRT

0.589770511474426

Interpretation

Uncertain