SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01311
Annotation
PREDICTED:_uncharacterized_protein_LOC106142207_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.047
 

Sequence

CDS
ATGTCGCCTAATCCTTACATTAAAAGCTTGCGTAAATTATTACTAGTCGTTCCCGACGGTTCGAAATCCTCGAAATCGGTAACATTCATTTCACAAGATAACAACAATGGACAAAACAAAAATTATGTTGACCCTAGTGGAATGCTGATCGAACCTCAGACGGAAAAGGAAGCAAACACAAAAAACATACGTTCAATTAGCACTCGACTACCGTGGCCTGCGCGGGCTCTTCCACGACTCGGATCAGGCGGATCACTCGATGACCAAGATCTCTGGCTTGCATTTCTGACTGAAACAGGCCTGATGCAATCCAGCGATGCAAGAAATATTTCTTATACGGAAACGGTGCAACGACACGATACCAAAATCGATAATCCAGATTCAATAATTCATCAAATGGATTTTTATGAAAAAATACCCAGCGAATCTTTTACAACAAATATAAGAGATGATTACGATGAAATCCATCGAAAATGTCCAGGTCTTTTCTGGGACACTATCGTAGTGGACGATAATGAAGAAGCATTTCAAAAATTGAAATCTATCATTCGTAATATTGTCAACTCTCAAAAGAATCAACAACCAATGTTTGACATAGATTTCACAAATTTAAAGTACTATCCTACAGTTAAAAAGAGACTAATAAAAATTCAAAATGAAATAGGAGCACAAAAATTGTTTAATTAA
Protein
MSPNPYIKSLRKLLLVVPDGSKSSKSVTFISQDNNNGQNKNYVDPSGMLIEPQTEKEANTKNIRSISTRLPWPARALPRLGSGGSLDDQDLWLAFLTETGLMQSSDARNISYTETVQRHDTKIDNPDSIIHQMDFYEKIPSESFTTNIRDDYDEIHRKCPGLFWDTIVVDDNEEAFQKLKSIIRNIVNSQKNQQPMFDIDFTNLKYYPTVKKRLIKIQNEIGAQKLFN

Summary

Pfam
PF00625   Guanylate_kin        + More
PF12799   LRR_4
Interpro
IPR008145   GK/Ca_channel_bsu        + More
IPR001611   Leu-rich_rpt       
IPR008144   Guanylate_kin-like_dom       
IPR032675   LRR_dom_sf       
IPR027417   P-loop_NTPase       
IPR025875   Leu-rich_rpt_4       
SUPFAM
SSF52540   SSF52540       
Gene 3D

Ontologies

Topology

Length:
228
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03153
outside
1  -  228
 
 

Population Genetic Test Statistics

Pi
267.995566
Theta
167.677196
Tajima's D
1.903627
CLR
0.343657
CSRT
0.870756462176891
Interpretation
Uncertain
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