Gene

KWMTBOMO01306

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr3(-):7764585-7766634      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.619 Nuclear   Reliability : 2.284

CDS

ATGCCTCCCCTCGTACGCCCTTCAGGCCAACCACCAGCATTCGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGTACTCAACACGCGGACCCCGAACACACCGAGTTCGTCGACAGGGAGGTCGAGCGCAGAACTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCCGGCTCCGACGGCATCCGCAACCGGGCGCTAAAACTCTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTTTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGTATACATAAGCCGGGCAAACCGACAAACGAAACTTCTAGTTACCGTCCGATTAGTCTCCTCCCGACGATAGGAAAAATTTACGAACGGCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTCTCATAGACGAACAGTTCGGATTCCGCTCTAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATTCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGACATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTACAAACTATACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAACTGACTGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAGCGCTCTTCGCCGATGACACGGCTATCTACTACTCGTGTAGGAATATGTCGCTGCTTCATCGGCGACTCCAGATCGCAGTAGCCACCATGGGACAGTGGTTCCGGAAGTGGCGAATTGACATCAACCCCACGAAAAGCGCAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACATCACTTCGAGCATCCCACTCCGTAGTAGGCGCGCAAACACCTCCGCCGTTAGTCCCATCACTCTCTTTGGCCAGCCCATACCGTGGGTCTCGAAGGTCAAATATCTAGGCGTCACCCTCGACAGAGGGATGACATTCCGTCCCCATATAAAAACGGTACGCGACCGCGCCGCGTTTATTCTAGGACGACTCTATCCAATGCTTTGTAGTCAAAGCAAACTGTCCCTTCGCAATAAGGTAACTCTCTACAAAACTTGCATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGCTCACGCAGCCCGCACCCACTTGAAATCCCTTCAGGTTATTCAATCACGATTCTGCAGGATAGCCGTCGGAGCGCCATGGTTCCTTAGGAATGTGGATCTCCACGATGACCTGGAGCTCGACTCTCTTAGTAAGTATCTACAGTCGGCATCGCTGCGCCATTTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGGTAAACCGTCGACGTCGCCCAAAGCACATCATTACGGATCCTCCTGATCCATTAACGGTGCTATTAGGCACCACAAGCACCGGTCACCGTCCTCGTCGAACCCGTCGCTTGCGACGAAGGGCTCGGCGAGCGAACTAA

Protein

MPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSTQHADPEHTEFVDREVERRTSLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIRNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLPTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRNMSLLHRRLQIAVATMGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSQSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSLSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHIITDPPDPLTVLLGTTSTGHRPRRTRRLRRRARRAN

Uniprot

Q9XXW0   Q93137   Q9BPQ0   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A1Y1NA23   V5GNF3   A0A139WA11   A0A139W8G9   V5GNJ2   A0A2S2PR14   X1WMU5   J9KKL3   X1WWC4   A0A087U2S8   J9KC83   A0A023EZE6   X1WXU3   A0A2S2PPK8   X1WLB2   A0A2S2QTZ8   A0A224XF24   A0A2S2QJM7   A0A2S2PX53   A0A023EYS8   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RIW7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7Q059   A0A3N5Z7I3   A0A2J7QUJ9   A0A2S2Q383   A0A2S2Q823   A0A2J7RS77   A0A2J7RB54   A0A1Y1M7E9   A0A2S2RAN7   A0A2J7PMP9   J9M522   A0A2J7RPU2   A0A2S2PH29   A0A2J7QEZ4   A0A2J7Q0Q6   A0A2J7Q5G9   Q07995   A0A2J7QFL0   A0A2S2NJB5   A0A2S2NGV8   A0A2J7R6U1   A0A2J7QR37   A0A2J7RKP3   A0A2J7R2E1   A0A2M4BEF4   A0A2H8U0H5   A0A2J7Q1Y9   A0A2S2QEE0   A0A2A4K8E7   A0A2M4BEZ9   A0A0J7KBP6   A0A2J7R8R8   A0A2J7Q2R1   A0A2M4BDA5   A0A2J7PBY3   A0A2S2N814   A0A0L0CBP5   A0A2J7QY69   A0A2M4BD62   A0A2M4BD66   A0A2J7PU96   A0A2J7PDS9   A0A182GMD9   A0A023F6S4   J9LC21   X1XGU0   A0A182GA28   A0A2J7QPI2   A0A2J7R579   A0A2J7R7D0   A0A2J7PDM0   A0A1Y1LKN6   J9KCZ4   A0A2J7R4B1   A0A2P8Z520   A0A1Y1KUU7   K7IN67   A0A0J7K4E0   A0A069DZC5   A0A2M4BD67   X1WZH0   A0A0A9YJ00   A0A0A9YU04  

Pubmed

10333566    23652563    26354079    10380107    28004739    18362917    + More
19820115    25474469    30086797    8387152    26108605    26483478    29403074    20075255    26334808    25401762   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    AF081103    AAC72921.1    AF081101    AAC72919.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KK117880    KFM71667.1    ABLF02033757    GBBI01004571    JAC14141.1    ABLF02008933    GGMR01018716    MBY31335.1    ABLF02042518    ABLF02057746    GGMS01012005    MBY81208.1    GFTR01008038    JAW08388.1    GGMS01008766    MBY77969.1    GGMS01000737    MBY69940.1    GBBI01004395    JAC14317.1    NEVH01023962    PNF17612.1    NEVH01007443    PNF35684.1    NEVH01003017    PNF40781.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01020071    PNF21969.1    RPOV01000134    RPJ78669.1    NEVH01010546    PNF32261.1    GGMS01002992    MBY72195.1    GGMS01004685    MBY73888.1    NEVH01000280    PNF43672.1    NEVH01005938    PNF38077.1    GEZM01038405    JAV81653.1    GGMS01017914    MBY87117.1    NEVH01023961    PNF17613.1    ABLF02024246    NEVH01001355    PNF42855.1    GGMR01016114    MBY28733.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01019964    PNF22161.1    NEVH01017559    PNF23833.1    S59870    AAB26437.2    NEVH01014858    PNF27387.1    GGMR01004661    MBY17280.1    GGMR01003407    MBY16026.1    NEVH01006754    PNF36554.1    NEVH01011985    PNF31054.1    NEVH01002716    PNF41415.1    NEVH01007838    PNF34986.1    GGFJ01002256    MBW51397.1    GFXV01007093    MBW18898.1    NEVH01019376    PNF22596.1    GGMS01006359    MBY75562.1    NWSH01000032    PCG80497.1    GGFJ01002257    MBW51398.1    LBMM01010106    KMQ87671.1    NEVH01006721    PNF37225.1    NEVH01019080    PNF22876.1    GGFJ01001842    MBW50983.1    NEVH01027074    PNF13841.1    GGMR01000676    MBY13295.1    JRES01000644    KNC29657.1    NEVH01009134    PNF33528.1    GGFJ01001843    MBW50984.1    GGFJ01001844    MBW50985.1    NEVH01021205    PNF19912.1    NEVH01026154    PNF14491.1    JXUM01014072    KQ560393    KXJ82651.1    GBBI01001646    JAC17066.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02055645    JXUM01155316    KQ572171    KXJ68070.1    NEVH01012089    PNF30491.1    NEVH01007393    PNF35987.1    NEVH01006736    PNF36716.1    NEVH01026386    PNF14434.1    GEZM01053022    JAV74219.1    ABLF02008463    NEVH01007578    PNF35646.1    PYGN01000192    PSN51582.1    GEZM01074951    JAV64378.1    LBMM01014395    KMQ85192.1    GBGD01000880    JAC88009.1    GGFJ01001858    MBW50999.1    ABLF02034467    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000218220    + More
UP000036403    UP000037069    UP000069940    UP000249989    UP000245037    UP000002358   

PRIDE

Q9XXW0    Q93137    Q9BPQ0    K9N5J5   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A1Y1NA23   V5GNF3   A0A139WA11   A0A139W8G9   V5GNJ2   A0A2S2PR14   X1WMU5   J9KKL3   X1WWC4   A0A087U2S8   J9KC83   A0A023EZE6   X1WXU3   A0A2S2PPK8   X1WLB2   A0A2S2QTZ8   A0A224XF24   A0A2S2QJM7   A0A2S2PX53   A0A023EYS8   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RIW7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7Q059   A0A3N5Z7I3   A0A2J7QUJ9   A0A2S2Q383   A0A2S2Q823   A0A2J7RS77   A0A2J7RB54   A0A1Y1M7E9   A0A2S2RAN7   A0A2J7PMP9   J9M522   A0A2J7RPU2   A0A2S2PH29   A0A2J7QEZ4   A0A2J7Q0Q6   A0A2J7Q5G9   Q07995   A0A2J7QFL0   A0A2S2NJB5   A0A2S2NGV8   A0A2J7R6U1   A0A2J7QR37   A0A2J7RKP3   A0A2J7R2E1   A0A2M4BEF4   A0A2H8U0H5   A0A2J7Q1Y9   A0A2S2QEE0   A0A2A4K8E7   A0A2M4BEZ9   A0A0J7KBP6   A0A2J7R8R8   A0A2J7Q2R1   A0A2M4BDA5   A0A2J7PBY3   A0A2S2N814   A0A0L0CBP5   A0A2J7QY69   A0A2M4BD62   A0A2M4BD66   A0A2J7PU96   A0A2J7PDS9   A0A182GMD9   A0A023F6S4   J9LC21   X1XGU0   A0A182GA28   A0A2J7QPI2   A0A2J7R579   A0A2J7R7D0   A0A2J7PDM0   A0A1Y1LKN6   J9KCZ4   A0A2J7R4B1   A0A2P8Z520   A0A1Y1KUU7   K7IN67   A0A0J7K4E0   A0A069DZC5   A0A2M4BD67   X1WZH0   A0A0A9YJ00   A0A0A9YU04  

PDB

6AR3     E-value=0.000505924,     Score=104

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

579

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.98791

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06157

outside

1  -  579

 

 

Pi

0.842193

Theta

0.481972

Tajima's D

0.529161

CLR

0

CSRT

0.617969101544923

Interpretation

Uncertain