Gene

KWMTBOMO01299

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]

Location

Bomo_Chr3(-):7612306-7614694      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.718

CDS

ATGTTCCTCACAGATTGTGATCTATGGGACTGTGTAAGTACAGACACACTTGATACTCCTGAATTAAAAAAGAGAGATAGTAAAGCAAGAGCAAAAATATGTCTACTCTTGGAAGAAAACATTTTCCCAATTGTTACCGGTGCCGTAACGGCAAAACAAACATGGGATGCGTTAGAAAAGGCCTACGCCGATGGCGGACTGTTAAGACGACTCACTTTATTAAGAAAATTATTTAATTTGAAATTATCATGTTTCGTAAATATCGAAGCATACATCAATGAAGTGCAGGCGACAAGTCAGGCTTTACAGCGAATCAAATCAGGACTGGATGATGAATTCATTGGGATCATAATGTTAGCTGGGTTGACCGAGGAATACAATCCTTTGGTGATGGCGGTGGAACATTCTGAAAGGAAATTAACTTCAGAAGCGGTCATATCTGCTCTAATGAAGGAAGGACAGCGCAAGCAGCCGGCAGTTGAAATGGATTCTGTGTTAGTGTCTAATAACGAAAAACCTAGTAGTAGTACGAAAAAGGCAATAATATGTCATTTTTGTAAAAAGAAAGGTCATTTTAAATGGCAATGTAAATTTTATAAAGATAGGGATAAGAAAGGTAATGCAAATGTATGCGTAGCTCAAAAGGAGACTAATGATTTTATTACCTTACTCTCTAATATGGGAAAGTCGAGAAATTGGATTATAGATTCTGGGGCAACATCTCATATGACATCATCAGATAATGTTTTAGTAAATGCTAAAGGTGGTTACCGGAAGTATATAACTACAGCTAATAATGAGAAAATATTATCTAAGGTAAAGGGTGATGTATTGATGCCTAATTATAAGTTAAAGTTTGAGAATGTTTTGTACATACCAGATTTGATAACCAATTTACTTTCTGTTAGTAGTATTTGTAAGCATGATTGTACAGTTGTTTTTGATAAACATTCTTGTAAAGTTTACAAATCTGCAGATGTATCCTTAGTGGGAAAAACTATTTTAGAAGCACCTTTAAAAGATGGGCTATATGTAGTAGACCGAGATGACAAGGCATTGGTTACTAAAGACATTAATTCGCCTGTTAACGATCAATATAAGTTATGGCATAGGCGTTTAGGTCATTTATCACCAGCTCTAATGAATAAATTAAGAGGGTTGGTTGATGGCTTTACCTTGAATGAATTTAGTAAGGAACCATGCGTCAGTTGTTGTAAAGGTAAACAGTGCGTAAAAAAGTTCCCAAAAAGAAAGAATAAAAGAGCTAAGGATATATTGAGGATATATATGGAGGAAGAGACATGGGGTGGTGCTCGATATTTTCTTATCTTTGTTGACGATTTTAGTCGGAAAGTTATGGGATATATGTTGAAATCCAAAACAGAAGTATTTGCTAAATTTAAGGAATTCAAGGTGTTTGTGGAGAATCAAACTAATAAAAAGATCAAAAAATTGCGTAGCGATAATGGTACTGAATATATAAACGATGAATTTCAAAGCTTTCTACGAGCTAATGGTATCCATCATCAGACTTCAGTGGCACACACTCCACAACAAAATGGAGTGGCAGAGCGTACAATTCGTACTGTAATTGAAAAGGCACGTTATCCTAAATCAGTTGAGGACGCATTGGAACGTTCGGATCGAGAGTTATGGCACACAGCCATGTTAGATGGATACAATTCGCTGATGCAAAACAAAAACAGTGAACAGAATTAA

Protein

MFLTDCDLWDCVSTDTLDTPELKKRDSKARAKICLLLEENIFPIVTGAVTAKQTWDALEKAYADGGLLRRLTLLRKLFNLKLSCFVNIEAYINEVQATSQALQRIKSGLDDEFIGIIMLAGLTEEYNPLVMAVEHSERKLTSEAVISALMKEGQRKQPAVEMDSVLVSNNEKPSSSTKKAIICHFCKKKGHFKWQCKFYKDRDKKGNANVCVAQKETNDFITLLSNMGKSRNWIIDSGATSHMTSSDNVLVNAKGGYRKYITTANNEKILSKVKGDVLMPNYKLKFENVLYIPDLITNLLSVSSICKHDCTVVFDKHSCKVYKSADVSLVGKTILEAPLKDGLYVVDRDDKALVTKDINSPVNDQYKLWHRRLGHLSPALMNKLRGLVDGFTLNEFSKEPCVSCCKGKQCVKKFPKRKNKRAKDILRIYMEEETWGGARYFLIFVDDFSRKVMGYMLKSKTEVFAKFKEFKVFVENQTNKKIKKLRSDNGTEYINDEFQSFLRANGIHHQTSVAHTPQQNGVAERTIRTVIEKARYPKSVEDALERSDRELWHTAMLDGYNSLMQNKNSEQN

Uniprot

A0A0N1ICY1   A0A0A9YFM0   A0A0J7NHJ8   A0A0V0T2I4   A0A2A4J959   A0A1Y1LWI3   + More
A0A0V1K1Y9   A0A0V1F2E6   E5SB91   A0A0V1APS7   A0A2A4JRI1   A0A0V1FKH2   A0A0V0T3I0   A0A034VP70   A0A0V0TUP0   A0A1Y1N6L8   A0A0V0WR33   A0A0A1WXQ3   A0A1Y1N668   A0A1Y1N932   A0A0N1IFR1   W4VRQ4   A0A194RJV9   A0A085MVP5   A0A0V0WQU6   A0A085N572   A0A194RU38   A0A212F7V4   A0A0A9XEY5   A0A1W7R657   W4VRP9   W4VRP2   A0A1W7R6H6   A0A224XA26   A0A0V0Z6Q0   A0A1W7R670   A0A2J7Q1Z2   A0A1W7R663   A0A2J7RKJ6   A0A2J7R668   A0A0A9Z683   A0A146LFV8   A0A2J7R8S8   A0A0V0RDY1   V5GAG2   A0A1B6E9D0   A0A0J7K0M9   A0A182GZK6   A0A1W7R6J6   A0A1W7R6K6   A0A0V0YAP7   A0A1Y1N3X2   A0A0V0YJB3   A0A0A9WQD4   A0A0V1HT08   A0A0V0YNF4   A0A0J7K5G8   K7J5Z3   A0A1W7R6D6   A0A0A9XVJ9   A0A0A9WPH5   A0A0S7KIW8   K7JBY9   A0A0K8U6S2   A0A0V1FXR9   A0A0A9WRE3   A0A0K8U956   A0A0A9XCL0   W8BYI7   A0A0A9WG89   A0A0A9WJ72   W8BFA2   A0A0J7K7B7   W8B528   W8AUM1   A0A0A1XSW5   A0A0A1WGJ2   W8ANX7   A0A0P6IXK4   K7JXM1   A0A034W7T5   A0A0A1X768   A0A2R6NZJ8   A0A0A1XLZ7   A0A182GNT8   A0A0J7K4F4   T1PKV2   W8BEX4   A0A2A4IIH8   A0A0V0V098   A0A251TN47   A0A0V1GS48   A0A131XNF9   B6V6Z8  

Pubmed

26354079    25401762    28004739    25348373    25830018    24929829    + More
22118469    26823975    26483478    20075255    24495485    26999592    28538728   

EMBL

KQ460882    KPJ11482.1    GBHO01011746    GBHO01011744    GBHO01011742    JAG31858.1    + More
JAG31860.1    JAG31862.1    LBMM01004924    KMQ91985.1    JYDJ01000877    KRX33198.1    NWSH01002292    PCG68657.1    PCG68658.1    GEZM01045162    JAV77889.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDR01000001    KRY80095.1    JYDH01000330    KRY26802.1    NWSH01000816    PCG74073.1    JYDT01000069    KRY86576.1    JYDJ01000808    KRX33413.1    GAKP01015352    JAC43600.1    JYDJ01000136    KRX42725.1    GEZM01011858    GEZM01011854    JAV93389.1    JYDK01000071    KRX78146.1    GBXI01011094    JAD03198.1    GEZM01011856    JAV93393.1    GEZM01011857    JAV93390.1    KQ460208    KPJ16606.1    GANO01000510    JAB59361.1    KQ460297    KPJ16236.1    KL367628    KFD61291.1    KRX78123.1    KL367553    KFD64618.1    KQ459875    KPJ19636.1    AGBW02009826    OWR49812.1    GBHO01026221    JAG17383.1    GEHC01000991    JAV46654.1    GANO01000659    JAB59212.1    GANO01000660    JAB59211.1    GEHC01000990    JAV46655.1    GFTR01008662    JAW07764.1    JYDQ01000379    KRY07987.1    GEHC01000989    JAV46656.1    NEVH01019375    PNF22597.1    GEHC01000988    JAV46657.1    NEVH01002725    PNF41351.1    NEVH01006980    PNF36330.1    GBHO01003630    JAG39974.1    GDHC01012180    JAQ06449.1    NEVH01006721    PNF37230.1    JYDL01000297    KRX12674.1    GALX01001351    JAB67115.1    GEDC01002834    JAS34464.1    LBMM01017716    KMQ83988.1    JXUM01099713    KQ564513    KXJ72145.1    GEHC01000868    JAV46777.1    GEHC01000867    JAV46778.1    JYDU01000039    KRX96809.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1    JYDU01000010    KRY00136.1    GBHO01036544    JAG07060.1    JYDP01000032    KRZ13440.1    JYDU01000001    KRY01876.1    LBMM01013295    KMQ85718.1    GEHC01000965    JAV46680.1    GBHO01020706    JAG22898.1    GBHO01033237    JAG10367.1    GBYX01207955    JAO77249.1    AAZX01000798    GDHF01030254    JAI22060.1    JYDT01000024    KRY90099.1    GBHO01033235    JAG10369.1    GDHF01029191    JAI23123.1    GBHO01026223    JAG17381.1    GAMC01008189    JAB98366.1    GBHO01036147    JAG07457.1    GBHO01036148    JAG07456.1    GAMC01018156    JAB88399.1    LBMM01012669    KMQ86061.1    GAMC01018154    JAB88401.1    GAMC01018157    JAB88398.1    GBXI01000292    JAD14000.1    GBXI01016677    JAC97614.1    GAMC01020352    JAB86203.1    GDUN01000214    JAN95705.1    AAZX01023884    GAKP01008575    JAC50377.1    GBXI01007143    JAD07149.1    MLYV02000620    PSR81378.1    GBXI01002679    JAD11613.1    JXUM01077078    KQ562985    KXJ74708.1    LBMM01014442    KMQ85179.1    KA648745    AFP63374.1    GAMC01011082    JAB95473.1    NWVJ01000098    PCG17690.1    JYDN01000113    KRX56900.1    CM007899    OTG12557.1    JYDP01000350    KRZ01021.1    GEFH01000951    JAP67630.1    FJ238509    ACI62137.1   

Proteomes

UP000053240    UP000036403    UP000055048    UP000218220    UP000054805    UP000054826    + More
UP000054632    UP000054776    UP000054995    UP000054673    UP000007151    UP000054783    UP000235965    UP000054630    UP000069940    UP000249989    UP000054815    UP000055024    UP000002358    UP000186601    UP000054681    UP000215914   

Pfam

PF13976   gag_pre-integrs        + More
PF00665   rve
PF13961   DUF4219
PF07727   RVT_2
PF00098   zf-CCHC
PF00078   RVT_1
PF14244   Retrotran_gag_3

Interpro

IPR036875   Znf_CCHC_sf        + More
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR025314   DUF4219       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR029472   Copia-like_N       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A0N1ICY1   A0A0A9YFM0   A0A0J7NHJ8   A0A0V0T2I4   A0A2A4J959   A0A1Y1LWI3   + More
A0A0V1K1Y9   A0A0V1F2E6   E5SB91   A0A0V1APS7   A0A2A4JRI1   A0A0V1FKH2   A0A0V0T3I0   A0A034VP70   A0A0V0TUP0   A0A1Y1N6L8   A0A0V0WR33   A0A0A1WXQ3   A0A1Y1N668   A0A1Y1N932   A0A0N1IFR1   W4VRQ4   A0A194RJV9   A0A085MVP5   A0A0V0WQU6   A0A085N572   A0A194RU38   A0A212F7V4   A0A0A9XEY5   A0A1W7R657   W4VRP9   W4VRP2   A0A1W7R6H6   A0A224XA26   A0A0V0Z6Q0   A0A1W7R670   A0A2J7Q1Z2   A0A1W7R663   A0A2J7RKJ6   A0A2J7R668   A0A0A9Z683   A0A146LFV8   A0A2J7R8S8   A0A0V0RDY1   V5GAG2   A0A1B6E9D0   A0A0J7K0M9   A0A182GZK6   A0A1W7R6J6   A0A1W7R6K6   A0A0V0YAP7   A0A1Y1N3X2   A0A0V0YJB3   A0A0A9WQD4   A0A0V1HT08   A0A0V0YNF4   A0A0J7K5G8   K7J5Z3   A0A1W7R6D6   A0A0A9XVJ9   A0A0A9WPH5   A0A0S7KIW8   K7JBY9   A0A0K8U6S2   A0A0V1FXR9   A0A0A9WRE3   A0A0K8U956   A0A0A9XCL0   W8BYI7   A0A0A9WG89   A0A0A9WJ72   W8BFA2   A0A0J7K7B7   W8B528   W8AUM1   A0A0A1XSW5   A0A0A1WGJ2   W8ANX7   A0A0P6IXK4   K7JXM1   A0A034W7T5   A0A0A1X768   A0A2R6NZJ8   A0A0A1XLZ7   A0A182GNT8   A0A0J7K4F4   T1PKV2   W8BEX4   A0A2A4IIH8   A0A0V0V098   A0A251TN47   A0A0V1GS48   A0A131XNF9   B6V6Z8  

PDB

5T3A     E-value=0.0157647,     Score=91

KEGG

NA   

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0003964   GO:0000287   GO:0015934   GO:0005576   GO:0016042   GO:0005634   GO:0006334   GO:0003779   GO:0016021  

PANTHER

PTHR11439  

Length:

572

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0377400000000001

Exp number, first 60 AAs:

0.03228

Total prob of N-in:

0.00227

outside

1  -  572

 

 

Pi

351.681561

Theta

156.592287

Tajima's D

3.94563

CLR

0.343657

CSRT

0.998800059997

Interpretation

Possibly Balancing Selection