SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01291
Pre Gene Modal
BGIBMGA009017
Annotation
PREDICTED:_uncharacterized_protein_LOC101739889_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr3(-):7434215-7446198      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.126
 

Sequence

CDS
ATGACGATAGAGCGTCTAGCGCAGTACGAGCGGCTAGTGGGCGGCGGGTGTGCCCGCAGACGTGCGGCGCGTCTCTCCGACCTGGAACGTGTGCAGGACCTGTTCCCTCACGACTACCTTGCATTGCACGACGCCGACGCACCCGCGGCACTTGCCTCGCACCATGCACAGAAACAGAAGAGCCTCCGTAAACGTCCAAGCTTGGATATCGGTAGTACAATCAGTGCGAGTAACGGAAATTTATCGCCACGCACGTTCATCATGGAAGCACCTGTGCAACTGTGCCCACTGGGAACGAGCTCCCCACCGCTAGATCGCCACTTGTTTCTCTTTAACGACTTGCTTTTAGTCGGCAAGTCGCGGGCCACGAATTGCTTTAAACTCAAGGAAAGCGTGAGACTTGCCGAAGTTTGGCTCTCGCTTCAGGACGGTGACGATACGGGATTCCTCATCGGATGGCCAACGTCTAACGGCGTCATTAACTACCTCGCTACGTACCCGACGCAAGCCGCCCGAGATACTTGGTTTAGAAAAATACAAAACGCTCTGAATGCCCAATTGGCCACAGAGCCGAAATCAACAAACATACAAATCTTCTACAAGGACTTGATGTCTTCCATTGAATTCTGTAAAACATTGTCCGTGAATCCAGAGATGAGTTCTCGCTGTGTGATACGACAGGCCCTCCATGTGATTCAAAATGGAGGCGAAGTGGAGGGTGAAGGTGACGCTGACGCTGACGACGGTCGGCTGGGTGCCGTCGACGAGTTCACGTTGTGTGTTCGGACGGGCCGTGATGCACCGTCCATGCCCCTAAAGGGTATCGAGAGACCACATTCGATACAGATGTCACGAATACGTCAAACTTTATCCAATGAAGAAGGGTTCGACATGGACCATGTTAATGCCAAGAACAACCCATGTGGACTTGTGTTCGAATTGCGGAAGAAAAATCAAGGCCTGAAGAACGGGAACAGCACGCCTGGACGCGGTCTTCGTTTACTCCGAAGGGGAGGGCGTCTGTTCGGCGTGGCGCTGACCAGGCTATGTAACGGCACACCGCCGCCCGCACTCATACAAGTCATGCGGCGCCTGAGGGTCCTCGCGCCCTTGACGCACGGCGTCTTCAGACGCAGCGCTAACGCCAAAGCGCTACGACTGCTAAGAGATAAGTTGGATACGTTGGGTCCGTGGGCAGAAGGGTGCCCTGAATTGGACCGTGCTCCAGTATTGTTGTTGGCTGCGTTAGTCAAAGAATTCTTTCGAGCTTTACCTCAGCCGCTTCTTGCCTCAGAACTATATCCAGCTTGGCTGCAAATTCTTAATTTATCTCAAAATGAAAAGGTGACTGCAGTTCGCTCATTACTGCTTAAACTCCCAAAGGCACACTACACGATGCTAACGTACTTTGTGTGCCTCTTACAAGCTATTGCCAAGAAATCCAACATCAACCTAATGTGTCCAATGAACCTGGGCGTTTGCGTCGGACCTAGCCTTCTTTGGCCGAATACTCCATGCGACAAAGCTCCTAAAGCGGTGCCGAAAGTCGTTGAACTATTAATTGTTAAAGCCGATATCTTGTTCGGGCCACAAATAGCCGGTCTTCTGGGTAACGGCAGTCCAGAATCGCCGAACGCCTTGCTCGACTCCGGCGCCGAAGAAAGCGACAGCCTCCATTCCGTTGGAATCTCTTTAGACTCTATGGAACTGACGCCGCGTAAAGAGAAATTGTCCTTAAGCAGGGATTCCGGATTAACGCTCTCTGAAGACGACTCGAACAGCAATGGCGGCAACAGCCCGGCCCCCCGCAATATCCTTCACAGCTCATCGGCGCCTTCTTGCAATTTACAACAAGATACGAAATTGTTAGCCCGATACAAAACGGAAAACCACAACGTCAACGGTCTTCCACAAAGACAAAACATTTATTCTAATAAAGCCGAATTATATAGTACCGTGAATGAAGAACTTTACACGGCGCCTTACGTCGGCGAAAGGTACGTACACAACACTATAAACATTGGAATCTCAAACGGTATCGACGATAGAAACTATGTCTCCAAGACGGCTTTGCAACGGTCGACGGCTGATATATACGCGCAGAGCCCAGCCAAATACATCACGGGTCTAGAACCTCAGAAGCCGCCGCGAAGCAACGTCTCCAAAGCAGCCCGCACTTCGAAGGTGTACAGCATGTACACTGAAACTCAGAACGCGGATTTAAACGCGACAAACAAGAATTTCAATAGAGCTAAAAGTTCGGATAATCTTTTAGAAACGAAACAAGAATCTCTCGATAATAAACAAAACTTGATATCTAGTCAGGAGAACATACTGTACACCAACATACACGACCTCGCCATGTTCACGGAGAACATTCAACGGCAAACTCAGTATCAGGCGCATACTAATGGTGTTTCAAACGCGACTAATAATTACAAACGCGTTTACGCGGGCTGGGACAAAAACAACACAGCATACGGCGTCAAACAAAACACGGAAAACATTTACGAGCAAATGAAAACAAAACACGGAGAATCCTCGCAGAATAATTCGGATGGGAAACTTACACCGGCAGCCACCATTTTTACAAGAAATGACTGGTCTCGTCAGGCAGCGAGGACAAAGAGCCTGGAAGTTAGCGATGACTCGCACTCGGACAAAACACGCAACGGAAATTACGATCCAAATATAAGTAACTGCTGCAGGAAAAGGCGGTTCGATCCGGCGCACATGTGCACTAAAAGCTGCACTGGCTTACAAGTGGCCAACACTAGGAGAGAGGAACAAATCAAACACAACATAAATCCATTACAAAACTCTTACTCATACGTTGATAATGTTCAAACGAATAATTCGGACGAGATTAAAAAGTGTCGAGTTCGTAATTACAATAATAAATTAAATCAATCCAAGTCTCTGGCCAATATCATTTTGAATAGCGATTCTAGCAGCAGCGACACTTTGTACCAACCACAGAACGCGTTCAACAGTCGATCGACCGAATCACCGGCCAGCGAGAACTCCTACGAGAACTGTTACTCCACGCAGTACATAGATCCCCTATACACTTCTGTGTACAATCGCAGAAGAGACATATACCACGAAGCGAAGTCAAACATCTTTGGATCTGATATCTACAAAGCCACTCCGACCGCCGTCGAGCCCGAGTATACAGAAAACGAAAAGAACAACAACAAAAAACCTCCTCAAATACCACCGCCTGTTCCGCCGAGGAAGATGGTGTACCAGAGAGTCCTGAAAAAATTCCAGCCTGTGCACGTGAACAAGGACGACAAAACGACGCGATCCAAGTCCGTGCCGCGTCTGTACCCATCGAACGGCGCCGACAAAAACATCCAGAACGTTCTAGATTTAGACGCCACCGATTCTGACACGGAATCAGAATCGTACGTTTAA
Protein
MTIERLAQYERLVGGGCARRRAARLSDLERVQDLFPHDYLALHDADAPAALASHHAQKQKSLRKRPSLDIGSTISASNGNLSPRTFIMEAPVQLCPLGTSSPPLDRHLFLFNDLLLVGKSRATNCFKLKESVRLAEVWLSLQDGDDTGFLIGWPTSNGVINYLATYPTQAARDTWFRKIQNALNAQLATEPKSTNIQIFYKDLMSSIEFCKTLSVNPEMSSRCVIRQALHVIQNGGEVEGEGDADADDGRLGAVDEFTLCVRTGRDAPSMPLKGIERPHSIQMSRIRQTLSNEEGFDMDHVNAKNNPCGLVFELRKKNQGLKNGNSTPGRGLRLLRRGGRLFGVALTRLCNGTPPPALIQVMRRLRVLAPLTHGVFRRSANAKALRLLRDKLDTLGPWAEGCPELDRAPVLLLAALVKEFFRALPQPLLASELYPAWLQILNLSQNEKVTAVRSLLLKLPKAHYTMLTYFVCLLQAIAKKSNINLMCPMNLGVCVGPSLLWPNTPCDKAPKAVPKVVELLIVKADILFGPQIAGLLGNGSPESPNALLDSGAEESDSLHSVGISLDSMELTPRKEKLSLSRDSGLTLSEDDSNSNGGNSPAPRNILHSSSAPSCNLQQDTKLLARYKTENHNVNGLPQRQNIYSNKAELYSTVNEELYTAPYVGERYVHNTINIGISNGIDDRNYVSKTALQRSTADIYAQSPAKYITGLEPQKPPRSNVSKAARTSKVYSMYTETQNADLNATNKNFNRAKSSDNLLETKQESLDNKQNLISSQENILYTNIHDLAMFTENIQRQTQYQAHTNGVSNATNNYKRVYAGWDKNNTAYGVKQNTENIYEQMKTKHGESSQNNSDGKLTPAATIFTRNDWSRQAARTKSLEVSDDSHSDKTRNGNYDPNISNCCRKRRFDPAHMCTKSCTGLQVANTRREEQIKHNINPLQNSYSYVDNVQTNNSDEIKKCRVRNYNNKLNQSKSLANIILNSDSSSSDTLYQPQNAFNSRSTESPASENSYENCYSTQYIDPLYTSVYNRRRDIYHEAKSNIFGSDIYKATPTAVEPEYTENEKNNNKKPPQIPPPVPPRKMVYQRVLKKFQPVHVNKDDKTTRSKSVPRLYPSNGADKNIQNVLDLDATDSDTESESYV

Summary

Uniprot
H9JHL9   A0A2H1WI28   A0A437AZH5   A0A2W1BHZ7   A0A2A4IUC2   A0A212F8E6   + More
A0A0L7KTI4   A0A194R881   A0A194PUC4  
Pubmed
19121390    28756777    22118469    26227816    26354079   
EMBL
BABH01012813    ODYU01008801    SOQ52718.1    RSAL01000245    RVE43587.1    KZ150048    + More
PZC74478.1    NWSH01007857    PCG62782.1    AGBW02009746    OWR50001.1    JTDY01006017    KOB66366.1    KQ460597    KPJ13852.1    KQ459591    KPI97011.1   
Proteomes
UP000005204    UP000283053    UP000218220    UP000007151    UP000037510    UP000053240    + More
UP000053268   
PRIDE
H9JHL9   
Pfam
PF00620   RhoGAP
Interpro
IPR011993   PH-like_dom_sf        + More
IPR000198   RhoGAP_dom       
IPR008936   Rho_GTPase_activation_prot       
IPR035899   DBL_dom_sf       
SUPFAM
SSF48350   SSF48350        + More
SSF48065   SSF48065       
Gene 3D
1.10.555.10     2.30.29.30     1.20.900.10    
ProteinModelPortal
H9JHL9   A0A2H1WI28   A0A437AZH5   A0A2W1BHZ7   A0A2A4IUC2   A0A212F8E6   + More
A0A0L7KTI4   A0A194R881   A0A194PUC4  
PDB
3MSX     E-value=1.01152e-22,     Score=268

Ontologies

KEGG
101739889    K20641 Rho GTPase-activating protein 20 | (RefSeq) uncharacterized LOC101739889
GO
GO:0007165   GO:0016598   GO:0000287   GO:0015934   GO:0005576   GO:0016042   GO:0005634   GO:0006334   GO:0003779   GO:0016021  

Topology

Length:
1139
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02807
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00101
outside
1  -  1139
 
 

Population Genetic Test Statistics

Pi
275.257956
Theta
194.743938
Tajima's D
1.161869
CLR
0.062681
CSRT
0.702914854257287
Interpretation
Uncertain
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