Silkworm Genome Informatics Database

Gene

KWMTBOMO01275

Pre Gene Modal

BGIBMGA014213

Annotation

hypothetical_protein_TcasGA2_TC001839_[Tribolium_castaneum]

Location

Bomo_Chr3(+):7237909-7239201 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.269

CDS

ATGATTCGAGACTACTTGTTAGCCCTTTCCGCAGTGACCAAATCAACGTCAATCCGCTTCATTTCTCGCATTTCCAACTCGAGAATCTGCGTGTACTTGGACTCAAAACAAACAGCTGACGAATTGGTTGACGTCATTAAAAACGTTAAAGTGAAAGACCACGTATTGGAGATTCGGCCGCTGATAACAAGAAACAAACGTATCGTTTTATCCAACGTTTGCCCCATAATTCCGCACGATATCTTAGAAGAAAAATTTAATGAAATGGGTATTAAAGTATTGTCTCCCATAACATTCATGAAAGTGGGCATCCCGGACCCTGGTTTTTCACACATTATGAGCTTTAGGAGACAAGTATACGTTTCCCCTGAGGATGAAAAAAGATTACCAGAATCGATGCAAATTAATTATGATGAAACCAATTATTGGATTTATATTACAAACGAAACAATGAAATGCTTTGTATGTAATGGAATGGGACACTTGGCAAAATACTGTCCGCAAAGCAGTCAACAGGTTCTTGGTACCAAAGGCCCTAACAACCTCACGCAAGAAAAACCAACTACTTCCAATGACACTACAGTCGAAACCAACAAGCTACCGTCACAGTCTCTCAATTCTACAATTAATCTTGAATCTGAAATAAACCAAATCTACCCCCCTACCGAAATTTCCAAACCGCAAGTACCAACAAACTTACTACCACACAATAAATTTGACATATACAAAGGTGTTAAGCGGATTCATCCATCTACCTCTTCAGAACCATCACAACCGGAAATAAATCAAGCTGAACCTACTTTAGATGACAGTAATATTATAGTCAGTGATTACACGGATGAAACCGACAGTAATTGGTCTCTGGACGAAGAACTAAAGAAGACCCCTAAGTCACTCAAGAAGAAGAAGAAAACTCTCGATGACAGAACTGAAGAACAAGTTTGGAAGGATATTAAAACAGAGTTGGATCAGTCAGAAATACAACCTCACTTTCCACTCACCTTAGACCAGTTTATTAGTTTTCTAGATAATTCCCGTAGCAAACAAAATCTTCAAGAACTTATCAAAGACTATACAGATGATATCCCGGATCTAATTGATATGTGCACATTTCTCCGCACTAAAATGAATTTAAATAGGAACCTCAAAAATAGATGTACAAGATTAGTTAAGAAACTAGAACTTATCAAACTGTTAGAAACCAGTAACAAGCCATAG

Protein

MIRDYLLALSAVTKSTSIRFISRISNSRICVYLDSKQTADELVDVIKNVKVKDHVLEIRPLITRNKRIVLSNVCPIIPHDILEEKFNEMGIKVLSPITFMKVGIPDPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCFVCNGMGHLAKYCPQSSQQVLGTKGPNNLTQEKPTTSNDTTVETNKLPSQSLNSTINLESEINQIYPPTEISKPQVPTNLLPHNKFDIYKGVKRIHPSTSSEPSQPEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKKTPKSLKKKKKTLDDRTEEQVWKDIKTELDQSEIQPHFPLTLDQFISFLDNSRSKQNLQELIKDYTDDIPDLIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP

Uniprot

H9JT23 D6WY68 J9JYJ6 Q76IM0 Q76IM2

Pubmed

19121390 18362917 19820115 12949131

EMBL

BABH01030666 KQ971357 EFA07722.1 ABLF02023436 ABLF02023438 ABLF02023446 + More
AB097139 BAC82610.1 AB097138 BAC82608.1

Proteomes

UP000005204 UP000007266 UP000007819

PRIDE

H9JT23

Pfam

PF00098   zf-CCHC        + More
PF00075   RNase_H
PF00078   RVT_1
PF14529   Exo_endo_phos_2

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR005135   Endo/exonuclease/phosphatase
IPR012337   RNaseH-like_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR036397   RNaseH_sf
IPR002156   RNaseH_domain
IPR000477   RT_dom

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098
SSF56219   SSF56219

Gene 3D

3.30.420.10 3.60.10.10

ProteinModelPortal

H9JT23 D6WY68 J9JYJ6 Q76IM0 Q76IM2

KEGG

102466386 no KO assigned | (RefSeq) Mir2835, bmo-mir-2835; microRNA 2835

GO

GO:0003676 GO:0008270 GO:0004523 GO:0006412 GO:0015934 GO:0005576 GO:0016042 GO:0005634 GO:0006334 GO:0003779 GO:0016021

Length:

405

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01383

Exp number, first 60 AAs:

0.01148

Total prob of N-in:

0.00357

outside

1 - 405

Pi

0.174362

Theta

0.747578

Tajima's D

0

CLR

0

CSRT

0.446077696115194

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree