SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01275
Pre Gene Modal
BGIBMGA014213
Annotation
hypothetical_protein_TcasGA2_TC001839_[Tribolium_castaneum]
Location in the cell
Nuclear   Reliability : 4.269
 

Sequence

CDS
ATGATTCGAGACTACTTGTTAGCCCTTTCCGCAGTGACCAAATCAACGTCAATCCGCTTCATTTCTCGCATTTCCAACTCGAGAATCTGCGTGTACTTGGACTCAAAACAAACAGCTGACGAATTGGTTGACGTCATTAAAAACGTTAAAGTGAAAGACCACGTATTGGAGATTCGGCCGCTGATAACAAGAAACAAACGTATCGTTTTATCCAACGTTTGCCCCATAATTCCGCACGATATCTTAGAAGAAAAATTTAATGAAATGGGTATTAAAGTATTGTCTCCCATAACATTCATGAAAGTGGGCATCCCGGACCCTGGTTTTTCACACATTATGAGCTTTAGGAGACAAGTATACGTTTCCCCTGAGGATGAAAAAAGATTACCAGAATCGATGCAAATTAATTATGATGAAACCAATTATTGGATTTATATTACAAACGAAACAATGAAATGCTTTGTATGTAATGGAATGGGACACTTGGCAAAATACTGTCCGCAAAGCAGTCAACAGGTTCTTGGTACCAAAGGCCCTAACAACCTCACGCAAGAAAAACCAACTACTTCCAATGACACTACAGTCGAAACCAACAAGCTACCGTCACAGTCTCTCAATTCTACAATTAATCTTGAATCTGAAATAAACCAAATCTACCCCCCTACCGAAATTTCCAAACCGCAAGTACCAACAAACTTACTACCACACAATAAATTTGACATATACAAAGGTGTTAAGCGGATTCATCCATCTACCTCTTCAGAACCATCACAACCGGAAATAAATCAAGCTGAACCTACTTTAGATGACAGTAATATTATAGTCAGTGATTACACGGATGAAACCGACAGTAATTGGTCTCTGGACGAAGAACTAAAGAAGACCCCTAAGTCACTCAAGAAGAAGAAGAAAACTCTCGATGACAGAACTGAAGAACAAGTTTGGAAGGATATTAAAACAGAGTTGGATCAGTCAGAAATACAACCTCACTTTCCACTCACCTTAGACCAGTTTATTAGTTTTCTAGATAATTCCCGTAGCAAACAAAATCTTCAAGAACTTATCAAAGACTATACAGATGATATCCCGGATCTAATTGATATGTGCACATTTCTCCGCACTAAAATGAATTTAAATAGGAACCTCAAAAATAGATGTACAAGATTAGTTAAGAAACTAGAACTTATCAAACTGTTAGAAACCAGTAACAAGCCATAG
Protein
MIRDYLLALSAVTKSTSIRFISRISNSRICVYLDSKQTADELVDVIKNVKVKDHVLEIRPLITRNKRIVLSNVCPIIPHDILEEKFNEMGIKVLSPITFMKVGIPDPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCFVCNGMGHLAKYCPQSSQQVLGTKGPNNLTQEKPTTSNDTTVETNKLPSQSLNSTINLESEINQIYPPTEISKPQVPTNLLPHNKFDIYKGVKRIHPSTSSEPSQPEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKKTPKSLKKKKKTLDDRTEEQVWKDIKTELDQSEIQPHFPLTLDQFISFLDNSRSKQNLQELIKDYTDDIPDLIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP

Summary

Pfam
PF00098   zf-CCHC        + More
PF00075   RNase_H
PF00078   RVT_1
PF14529   Exo_endo_phos_2
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR012337   RNaseH-like_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR000477   RT_dom       
SUPFAM
SSF57756   SSF57756        + More
SSF53098   SSF53098       
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
405
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01383
Exp number, first 60 AAs:
0.01148
Total prob of N-in:
0.00357
outside
1  -  405
 
 

Population Genetic Test Statistics

Pi
0.174362
Theta
0.747578
Tajima's D
0
CLR
0
CSRT
0.446077696115194
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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