Gene

KWMTBOMO01273  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008865

Annotation

ribosomal_protein_L13A_[Bombyx_mori]

Location

Bomo_Chr3(+):7216359-7219180      View in EpiBrowser

Full name

60S ribosomal protein L13a      

Location in the cell

Mitochondrial   Reliability : 2.53

CDS

ATGACGGGCTTTAGCAATAAGGCCATAGTGATCGATGGCCGTGGTCATCTGCTGGGCCGTCTGGCGGCAGTCATCGCCAAGGTCCTTCTCGAAGGGAACAAAGTTGTTGTGGTTCGCTGCGAACAAATCAACATCTCTGGCAACTTCTTTAGGAACAAACTCAAGCTTATGTCATTCCTGCGTAAGAGGTGCAACGTGAATCCTGCTCGTGGACCTTTCCATTTTAGAGCTCCATCTAAGATTCTATGGAAGACTGTAAGAGGCATGATCCCACACAAAACAGAGCGTGGCAAGAATGCTCTTAGGAGGCTACGTACATATGACGGGTGCCCTCCTCCCTTTGATAACCGTCGACGTGTTGTAGTGCCTGCTGCTCTACGTGTCTTCTGTCTGAAACCTGGCCGTAATTACTGTCATGTAGGCAGACTGTCCCATGAAATTGGATGGAAATACCGTGATGTTGTTCGTAAGCTTGAAGACAAGAGGAAGGGCAAGGCTGTTAAGAGAGTTGCCTATGAAAAGAAACTTAAGAGGATCACCAAGGATGCTGGTGAGAAGGTGTCGAAGGCGACAACACCATTCACTACCATCATCCAATCCTATGGATACAATTAG

Protein

MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNRRRVVVPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGYN

Similarity

Belongs to the universal ribosomal protein uL13 family.

Keywords

Ribonucleoprotein   Ribosomal protein   3D-structure   Complete proteome   Reference proteome  

Feature

chain  60S ribosomal protein L13a

Uniprot

Q5UAS5   D1LYJ7   A0A3G1T1J7   A0A221SMT3   E3UUW4   Q8MUR4   + More
I4DMB3   I4DIF2   A0A2H1W9Q2   D6C653   Q962U0   A0A2A4IVL6   G0ZEG2   A0A212EHG5   E7DZ44   S4NIA6   A0A194R9C7   A0A0K8SGL9   A0A2W1BFJ4   A0A2A4IUS3   A7KCW1   L0CP39   K7ISL7   A0A232EZT1   A0A158NDR5   A0A2A3E700   A0A088AJ39   V9IE00   A0A0L7LDC4   D1M822   D6WLA7   A0A0C9RPS2   Q56FD3   A0A0N9MPF1   A0A2P8Z8S9   A0A195D8X3   A0A067RPR2   A0A026W5F0   A0A154PG31   A0A310SSC1   A0A2J7RRH2   A0A109NIA7   A0A1W4X959   A0A1B1NJ07   A0A0N1IT94   A0A1B6IWZ6   A0A023F8Y3   A0A161TJF3   A0A1B6G8M1   A0A224XY64   A0A069DPE3   A0A0P4VT49   T1I786   A0A1Y1KWB8   A0A0A9ZBW7   A0A0L7R7V3   A0A2R7WVF8   E2A0P0   E2BGD5   R4WPW0   A0A0T6ASY2   R4G4J8   J3JU67   A9QQ28   B3LWG3   Q297M7   B4G474   A0A3B0K546   A0A1B6M809   A0A1W4UJF3   B4QWY9   B4PUV1   B4I439   B3P2G9   Q9VNE9   B4NKA3   A0A2I9LPK6   A0A0K8TQ83   B4KCR2   B4M520   A0A087T8V3   A0A0M5J1A1   B4JST8   N6UJP4   U4U0A6   E0VX11   A0A1W7R9S1   B5M6D3   A0A0K8U260   A0A0C9QBT4   A0A0V1M737   A0A034WQ96   A0A0V1HLY9   Q6XHW0   A0A0V1HZQ9   A0A1B1LYR2   A0A182PVY4   A0A182M3B8   A0A182KDM3   A0A1L8EH80  

Pubmed

19121390    22651552    26354079    14668217    22118469    23622113    + More
28756777    17603110    20075255    28648823    21347285    26227816    18362917    19820115    29403074    24845553    24508170    30249741    25474469    26334808    27129103    28004739    25401762    20798317    23691247    22516182    17994087    15632085    17550304    10731132    12537572    12537569    23636399    29248469    26369729    23537049    20566863    25348373    14525923    27392023   

EMBL

BABH01012836    AY769283    AAV34825.1    GU084271    ACY95304.1    MG992416    + More
AXY94854.1    KX668535    ASN77691.1    HM590404    ADP21473.1    AF514334    AK402431    BAM19053.1    AK401070    KQ459591    BAM17692.1    KPI97023.1    ODYU01007223    SOQ49811.1    FJ979921    ADC44873.1    AF400184    NWSH01006459    PCG63418.1    JF265040    AEL28871.1    AGBW02014900    OWR40910.1    HQ424747    ADT80691.1    GAIX01014149    JAA78411.1    KQ460597    KPJ13865.1    GBRD01013385    JAG52441.1    KZ150082    PZC73842.1    PCG63419.1    EF207949    ABS57429.1    JX975721    AGA17991.1    NNAY01001464    OXU23885.1    ADTU01012806    KZ288368    PBC26811.1    JR040810    JR040811    AEY59309.1    AEY59310.1    JTDY01001603    KOB73399.1    GU120446    ACY71296.1    KQ971343    EFA03478.1    GBYB01010480    JAG80247.1    AY961567    AAX62469.1    KR080495    ALG76023.1    PYGN01000144    PSN52901.1    KQ981153    KYN08874.1    KK852498    KDR22610.1    KK107436    QOIP01000002    EZA50841.1    RLU25607.1    KQ434899    KZC10836.1    KQ760629    OAD59732.1    NEVH01000604    PNF43437.1    KC507337    AHB12460.1    KT274800    ANS83635.1    KQ435851    KOX70724.1    GECU01016242    JAS91464.1    GBBI01000801    JAC17911.1    GEMB01000151    JAS02962.1    GECZ01010974    JAS58795.1    GFTR01003397    JAW13029.1    GBGD01002971    JAC85918.1    GDKW01000916    JAI55679.1    ACPB03006260    GEZM01077827    GEZM01077826    JAV63157.1    GBHO01001675    JAG41929.1    KQ414637    KOC66960.1    KK855686    PTY23528.1    GL435626    EFN72943.1    GL448143    EFN85250.1    AK417711    BAN20926.1    LJIG01022904    KRT78134.1    GAHY01000711    JAA76799.1    BT126780    AEE61742.1    EU247111    ABX75375.1    CH902617    EDV43796.1    CM000070    EAL28178.1    CH479179    EDW25112.1    OUUW01000007    SPP83130.1    GEBQ01007911    JAT32066.1    CM000364    EDX11751.1    CM000160    EDW97758.1    CH480821    EDW54982.1    CH954181    EDV47919.1    AE014297    AY051640    CH964272    EDW84033.1    GFWZ01000323    MBW20313.1    GDAI01001302    JAI16301.1    CH933806    EDW15911.1    CH940652    EDW59731.1    KK114017    KFM61542.1    CP012526    ALC45374.1    CH916373    EDV94828.1    APGK01021328    APGK01021329    KB740314    ENN80891.1    KB631743    ERL85728.1    DS235824    EEB17917.1    GFAH01000499    JAV47890.1    EU979484    ACH48187.1    GDHF01031894    JAI20420.1    GBYB01011913    JAG81680.1    JYDO01000191    KRZ67613.1    GAKP01001216    JAC57736.1    JYDP01000049    KRZ11530.1    AY232073    AAR10096.1    JYDR01000056    JYDT01000048    JYDS01000304    JYDV01000019    KRY71562.1    KRY87898.1    KRZ16061.1    KRZ41611.1    KU664391    ANS59101.1    AXCM01001798    GFDG01000709    JAV18090.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000007151    UP000053240    UP000002358    + More
UP000215335    UP000005205    UP000242457    UP000005203    UP000037510    UP000007266    UP000245037    UP000078492    UP000027135    UP000053097    UP000279307    UP000076502    UP000235965    UP000192223    UP000053105    UP000015103    UP000053825    UP000000311    UP000008237    UP000007801    UP000001819    UP000008744    UP000268350    UP000192221    UP000000304    UP000002282    UP000001292    UP000008711    UP000000803    UP000007798    UP000009192    UP000008792    UP000054359    UP000092553    UP000001070    UP000019118    UP000030742    UP000009046    UP000054843    UP000055024    UP000054632    UP000054805    UP000054826    UP000054995    UP000075885    UP000075883    UP000075881   

PRIDE

Q5UAS5    Q8MUR4    Q962U0    A0A088AJ39    Q9VNE9   

Pfam

PF00572   Ribosomal_L13        + More
PF08409   DUF1736

Interpro

IPR005755   Ribosomal_L13_euk/arc        + More
IPR005822   Ribosomal_L13       
IPR036899   Ribosomal_L13_sf       
IPR023563   Ribosomal_L13_CS       
IPR013618   DUF1736       
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR006597   Sel1-like       

SUPFAM

SSF52161   SSF52161        + More
SSF48452   SSF48452       

Gene 3D

3.90.1180.10     1.25.40.10    

CDD

cd00392  Ribosomal_L13

ProteinModelPortal

Q5UAS5   D1LYJ7   A0A3G1T1J7   A0A221SMT3   E3UUW4   Q8MUR4   + More
I4DMB3   I4DIF2   A0A2H1W9Q2   D6C653   Q962U0   A0A2A4IVL6   G0ZEG2   A0A212EHG5   E7DZ44   S4NIA6   A0A194R9C7   A0A0K8SGL9   A0A2W1BFJ4   A0A2A4IUS3   A7KCW1   L0CP39   K7ISL7   A0A232EZT1   A0A158NDR5   A0A2A3E700   A0A088AJ39   V9IE00   A0A0L7LDC4   D1M822   D6WLA7   A0A0C9RPS2   Q56FD3   A0A0N9MPF1   A0A2P8Z8S9   A0A195D8X3   A0A067RPR2   A0A026W5F0   A0A154PG31   A0A310SSC1   A0A2J7RRH2   A0A109NIA7   A0A1W4X959   A0A1B1NJ07   A0A0N1IT94   A0A1B6IWZ6   A0A023F8Y3   A0A161TJF3   A0A1B6G8M1   A0A224XY64   A0A069DPE3   A0A0P4VT49   T1I786   A0A1Y1KWB8   A0A0A9ZBW7   A0A0L7R7V3   A0A2R7WVF8   E2A0P0   E2BGD5   R4WPW0   A0A0T6ASY2   R4G4J8   J3JU67   A9QQ28   B3LWG3   Q297M7   B4G474   A0A3B0K546   A0A1B6M809   A0A1W4UJF3   B4QWY9   B4PUV1   B4I439   B3P2G9   Q9VNE9   B4NKA3   A0A2I9LPK6   A0A0K8TQ83   B4KCR2   B4M520   A0A087T8V3   A0A0M5J1A1   B4JST8   N6UJP4   U4U0A6   E0VX11   A0A1W7R9S1   B5M6D3   A0A0K8U260   A0A0C9QBT4   A0A0V1M737   A0A034WQ96   A0A0V1HLY9   Q6XHW0   A0A0V1HZQ9   A0A1B1LYR2   A0A182PVY4   A0A182M3B8   A0A182KDM3   A0A1L8EH80  

PDB

4V6W     E-value=1.46085e-65,     Score=630

KEGG

692668    K02872 large subunit ribosomal protein L13Ae | (RefSeq) RpL13A; ribosomal protein L13A

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0015934   GO:0003735   GO:0006412   GO:0005840   GO:0017148   GO:0003729   GO:0022625   GO:0016021   GO:0022626   GO:0002181   GO:0005576   GO:0016042   GO:0005634   GO:0006334   GO:0003779  

PANTHER

PTHR11545:SF3   PTHR11545  

Length:

204

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02776

Exp number, first 60 AAs:

0.02702

Total prob of N-in:

0.09216

outside

1  -  204

 

 

Pi

207.068213

Theta

193.941909

Tajima's D

0.369519

CLR

41.883164

CSRT

0.474626268686566

Interpretation

Uncertain