Silkworm Genome Informatics Database

Gene

KWMTBOMO01266

Annotation

PREDICTED:_protein_gooseberry-neuro_[Papilio_xuthus]

Location

Bomo_Chr3(+):7129699-7146687 View in EpiBrowser

Transcription factor

PAX

Location in the cell

Nuclear Reliability : 3.385

CDS

ATGGAACGACACCAAAATGGTATGGATGTGTGGGTAGGCCAGGGTCGAGTGAATCAACTGGGAGGTCTATTTATCAACGGTCGACCTCTACCAAACCACATCAGGTTGAAAATAGTGGAAATGGCCGCAGCCGGCGTAAGGCCCTGCGTTATCTCGCGACAGCTACGCGTCTCACACGGTTGCGTGTCCAAAATACTCAATCGATACCAGGAAACCGGTTCGATTAGACCTGGCGTGATTGGCGGATCGAAGCCGAGGGTCGCTACACCTGAAGTAGAAGCTAGAATCGAAGAACTCAAACGACAAAATCCGGGTATATTTTCATGGGAAATAAGAGAAAAGTTAATTAAGGAAGGCGTCACGGACCCACCCAGCATATCGTCAATATCCCGACTGCTCAGAGGAGGTTCGAGGGACCCGGATGGAAAGAAAGACTATAGCATAGACGGCATACTTGGAGATATCGACTCCGAACCAGGATTGACGCTGAAAAGGAAGCAACGTAGATCTCGAACAACATTCACAGGCGAGCAACTTGATGCATTAGAGAGGGCGTTTCACAGAACACAATACCCAGATGTCTACACTAGAGAGGAATTGGCACTTCAGACAGGACTTACTGAAGCAAGAATACAGGTCTGGTTTTCAAATCGAAGAGCGCGCTTAAGAAAACACACAGGATCAAACACCAGCCCCGGCATCACAGGCTATGCGCCATTACCCATGCCCCAAATACCATGCCCTTATCCTGCTGGAGAAATATCGTCTCTTGCGCAACACCATCCTCAACATCCCGATGCTTGGCATCACCAAAAATACGCCAATTACAACCAGCTTATGGCACAATCACAGCACTTGAACCAAGCTTTCCAAAATGCTGCCTTCCCAAGTACTTCAGGATCCTCGTTCAGTCACTTGGTAAGCAGTACTAATGGGCCACCTCACAACCAAATACTAGACACCGGTATACCAAGAAATGAATATCCAAGATATCCCACTAATGAAATCTATGCCAAACCTATGAATTATCTGCCCAAAGAAACTGAAGGTGAAAACAAAATCACAGAAGAAATTGTTGAAGCACGAGAAGATCCTTATGTTAAACCAGTCGAGCACGAATTTGATAAGCCTCTACCTACAAACGAAACTGAGTACTCTAAAGTTCCTACAGATTATTCCAAAGTTCCTATAGATACTACAACCACACAAAATTGGAGTCCATCACATAATTCACTGAACATGAGTCTTGCTGGTATATCCACTGAATACAAATACATGAATGATCCTTACACATTCCCTAACGTCGGAGAATCTCTTAATCCTCATAGTTATTCTAATCCCCCAAACATGGCAAACAAATACTGGATATGA

Protein

MERHQNGMDVWVGQGRVNQLGGLFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPEVEARIEELKRQNPGIFSWEIREKLIKEGVTDPPSISSISRLLRGGSRDPDGKKDYSIDGILGDIDSEPGLTLKRKQRRSRTTFTGEQLDALERAFHRTQYPDVYTREELALQTGLTEARIQVWFSNRRARLRKHTGSNTSPGITGYAPLPMPQIPCPYPAGEISSLAQHHPQHPDAWHHQKYANYNQLMAQSQHLNQAFQNAAFPSTSGSSFSHLVSSTNGPPHNQILDTGIPRNEYPRYPTNEIYAKPMNYLPKETEGENKITEEIVEAREDPYVKPVEHEFDKPLPTNETEYSKVPTDYSKVPIDTTTTQNWSPSHNSLNMSLAGISTEYKYMNDPYTFPNVGESLNPHSYSNPPNMANKYWI

Uniprot

A0A194R9D7 A0A194PUE5 A0A0L7LJD2 A0A212FNR6 A0A1Y1K565 A0A158NQ28 + More
A0A0B5L7F0 A0A1J1J2E6

Pubmed

26354079 26227816 22118469 28004739 21347285 25627710 + More

EMBL

KQ460597 KPJ13875.1 KQ459591 KPI97031.1 JTDY01000890 KOB75540.1 + More
AGBW02004669 OWR55385.1 GEZM01095834 JAV55310.1 ADTU01022897 ADTU01022898 ADTU01022899 ADTU01022900 KJ957833 AJG44469.1 CVRI01000064 CRL05017.1

Proteomes

UP000053240 UP000053268 UP000037510 UP000007151 UP000005205 UP000183832 + More

Pfam

PF00046 Homeodomain + More
PF00292 PAX

Interpro

IPR001523   Paired_dom        + More
IPR036388   WH-like_DNA-bd_sf
IPR009057   Homeobox-like_sf
IPR017970   Homeobox_CS
IPR001356   Homeobox_dom
IPR000047   HTH_motif

SUPFAM

SSF46689 SSF46689

Gene 3D

1.10.10.10

CDD

cd00086 homeodomain
cd00131 PAX

ProteinModelPortal

A0A194R9D7 A0A194PUE5 A0A0L7LJD2 A0A212FNR6 A0A1Y1K565 A0A158NQ28 + More
A0A0B5L7F0 A0A1J1J2E6

PDB

1PDN E-value=4.73036e-52, Score=517

KEGG

101741552 K09381 paired box protein 3/7 | (RefSeq) protein gooseberry-neuro-like

GO

GO:0006355 GO:0043565 GO:0005634 GO:0007275 GO:0003677 GO:0004190 GO:0006508 GO:0004553 GO:0006334 GO:0003779 GO:0016021

Subcellular location

Nucleus

Length:

456

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00241

Exp number, first 60 AAs:

0.00184

Total prob of N-in:

0.01098

outside

1 - 456

Pi

236.190338

Theta

195.563636

Tajima's D

1.128112

CLR

0.234284

CSRT

0.698115094245288

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics