Silkworm Genome Informatics Database

Gene

KWMTBOMO01265

Pre Gene Modal

BGIBMGA009025

Annotation

PREDICTED:_protein_gooseberry_isoform_X1_[Papilio_polytes]

Location

Bomo_Chr3(-):7069331-7092248 View in EpiBrowser

Transcription factor

PAX

Location in the cell

Nuclear Reliability : 4.564

CDS

ATGAATCAACTCGGTGGAGTCTTCATCAATGGTCGTCCACTACCAAACCACATCAGATTGAAGATCGTTGAAATGGCGGCGGCGGGTGTGCGGCCTTGTGTCATCTCGCGACAACTACGCGTCTCACACGGTTGTGTTTCCAAGATACTCAACAGATATCAGGAAACTGGCTCTATTCGTCCTGGTGTAATTGGTGGATCGAAACCGCGAGTCGCAACTCCTGAAGTTGAAAACAGGATCGAAGAACTGAAGAGACAAAACCCAGGTATATTCTCCTGGGAAATTAGAGATAAACTAATAAAAGAAGGAATCTGTGATAAAAACACTGCGCCGTCCGTGAGTTCTATTTCGAGACTCATAAGAGGAGGCAAAAGGGACGAAACTGATCCTAGAAGGAATCACAGCATTGATGGAATTCTAGGTCCGTCATCTTGTGAAGACTCAGATACAGAATCGGAACCAGGTATCCCGTTGAAAAGAAAGCAACGAAGATCCAGAACCACCTTCTCTGGTGATCAGCTCGAGGCCTTAGAACGCGCATTCACCAGGACCCAGTACCCTGACGTATATACAAGAGAAGAGCTAGCGCAGAAGACTAAATTGACTGAAGCTAGGGTACAGGTTTGGTTTTCAAATCGAAGAGCCCGACTCCGTAAACAACTAAATTCCCAACAATTAAGTGCTTTCAACACGATGTCGTTACAATCCGCCTTCCCATCAGTCCATCAACAATATGAACCGCCTACATCATTTAATCCTCAGTGCACATCATGGCAACCGTCATATTCTTCTGCTTTGGGATCAAGTTCAGTATTAAATTCCGCTTTGGCTCCGTCCTTACATCAAACGGCATTAACCGCCCCTTCCGTTTGCCAGTCGGCTTTAGCAGCATCATCTTTACATCCGCCAACTTCATCATCCTTTTCTTCTGGCAATTTAACGCCATTATCGCATTCGTCTGATCTTACCGCTTCCTTGCAACCACCTCCTGAGACAACTCCTCCTAGTTCAAGTCCGGTTACTACCAGTCCATCAGCCAATCAGTCAAGCGCGATAACCTACCCGCACTCTTCGTACGCCACTAATGATGCCGTGACACATCCATACGGCTATGGAGATTATTCGAAACAAGAGCACGCTATGTCTGCGCACAATCATTGGACTTCAAGACAACTCAGTGGACACGCACAAAACAAACTCGGGGAAGTAGGCTCTTGGCCTGAAAATTATAGTACATTCTTCGGAACGAACCCATCACACTATGCATCTCACGCGCACTCGCCCACCGAGGCCAAATCTGGCTACCCCTATTTGGGTCAACTCGGTGGTATGGATATGGGCAGAGTACACTAA

Protein

MNQLGGVFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPEVENRIEELKRQNPGIFSWEIRDKLIKEGICDKNTAPSVSSISRLIRGGKRDETDPRRNHSIDGILGPSSCEDSDTESEPGIPLKRKQRRSRTTFSGDQLEALERAFTRTQYPDVYTREELAQKTKLTEARVQVWFSNRRARLRKQLNSQQLSAFNTMSLQSAFPSVHQQYEPPTSFNPQCTSWQPSYSSALGSSSVLNSALAPSLHQTALTAPSVCQSALAASSLHPPTSSSFSSGNLTPLSHSSDLTASLQPPPETTPPSSSPVTTSPSANQSSAITYPHSSYATNDAVTHPYGYGDYSKQEHAMSAHNHWTSRQLSGHAQNKLGEVGSWPENYSTFFGTNPSHYASHAHSPTEAKSGYPYLGQLGGMDMGRVH

Uniprot

H9JHM7 A0A194RD89 A0A194PUN1 A0A212ENH4 A0A0L7LL28 A0A2H1WWJ2 + More
A0A2W1BQ92

Pubmed

19121390 26354079 22118469 26227816 28756777

EMBL

BABH01012843 KQ460597 KPJ13876.1 KQ459591 KPI97032.1 AGBW02013638 + More
OWR43055.1 JTDY01000708 KOB76142.1 ODYU01011598 SOQ57439.1 KZ150082 PZC73853.1

Proteomes

UP000005204 UP000053240 UP000053268 UP000007151 UP000037510

PRIDE

H9JHM7

Pfam

PF00046 Homeodomain + More
PF00292 PAX

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR009057   Homeobox-like_sf
IPR001523   Paired_dom
IPR001356   Homeobox_dom
IPR017970   Homeobox_CS

SUPFAM

SSF46689 SSF46689

Gene 3D

1.10.10.10

CDD

cd00086 homeodomain
cd00131 PAX

ProteinModelPortal

H9JHM7 A0A194RD89 A0A194PUN1 A0A212ENH4 A0A0L7LL28 A0A2H1WWJ2 + More
A0A2W1BQ92

PDB

1PDN E-value=8.96943e-58, Score=567

KEGG

101741981 K09381 paired box protein 3/7 | (RefSeq) protein gooseberry-like

GO

GO:0007275 GO:0005634 GO:0043565 GO:0006355 GO:0003677 GO:0004190 GO:0006508 GO:0004553 GO:0006334 GO:0003779 GO:0016021

Subcellular location

Nucleus

Length:

450

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00176

outside

1 - 450

Pi

248.858474

Theta

195.784397

Tajima's D

1.051437

CLR

0.208178

CSRT

0.667266636668167

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics