Gene

KWMTBOMO01260  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008861

Annotation

troponin_C_25D_[Bombyx_mori]

Location

Bomo_Chr3(+):6961482-6966677      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.804 Nuclear   Reliability : 1.913

CDS

ATGGATTCCGATGATGAACAAAAGATGGCCATGCTGCGTAAAGCATTCCAGATGTTTGACACCACGAAGTCTGGTTACATCGACGTGCTGAAGATCTCCACCATTCTCAACACAATGGGACAGCTATTCGATGACTCAGAACTTCAAGCACTCATCGATGAAAACGATCCGGAAAACAGTGGGAAGATCAACTTTGATGGCTTCTGTAATATTGCTTCCCATTTCCTTGAAGAGGAAGACGCTGAAGCCATGCAACAAGAACTGAAAGAAGCTTTCAGATTATACGACCGTGAAGGTAACGGTTACATCACCACTTCAACACTGAAAGAGATCCTGGCCGCTCTTGACGATAAACTCAGCAACGCTGATCTTGACGGCATCATTGCTGAAATTGACACTGACGGCTCAGGAACTGTGGACTTTGATGAGTTCATGGAGATGATGACTGGAGACTAA

Protein

MDSDDEQKMAMLRKAFQMFDTTKSGYIDVLKISTILNTMGQLFDDSELQALIDENDPENSGKINFDGFCNIASHFLEEEDAEAMQQELKEAFRLYDREGNGYITTSTLKEILAALDDKLSNADLDGIIAEIDTDGSGTVDFDEFMEMMTGD

Uniprot

B1ABS9   Q1HPU3   I4DM85   A0A2W1BGD3   Q5MGI4   A0A194R9E2   + More
A0A194PUF2   I4DKA7   A0A212ENI3   A0A0K8TSM8   A0A310SBV7   I7JI13   A0A088A1R8   A0A1A9WW92   A0A1A9Y3H2   A0A1B0ASE7   A0A336LVV7   A0A1A9VMI7   A0A1B0AEK8   D3TQG4   E2AW14   A0A154P0V4   A0A1J1I2M0   K7IPW2   A0A2J7RQU3   A0A151I3Y2   T1P891   A0A1B0CT53   A0A2P0XIY8   A0A0M9A9B6   A0A158NSR4   B4N789   A0A1I8Q9A8   A0A0C9QDD4   A0A0L0CDP9   A0A1L8E500   B4P083   B3MLM5   B4KJT2   B4LRE5   B4Q3J8   Q9VMT2   W8C2W5   A0A0K8UMP1   A0A034W8E9   A0A0A1X203   A0A1W4UWX9   A0A0K8V5W9   E2BHB8   B3N4T9   A0A0J9QW26   J9JKK3   A0A0M3QTQ5   A0A3L8DG92   T1EAW4   A0A3B0K1Q1   Q29M18   B4G6Q0   I7L9C9   A0A067RM50   X2JD70   B4I1E3   E9JAJ5   A0A182R0S1   A0A1Q3FSS2   A0A182RAU7   A0A182VUL7   A0A1S3CW92   A0A182YNF6   U5ESI2   A0A182MD79   A0A023F4V2   A0A182P9I4   A0A182HGB8   A0A1S4H1L0   B0WCH4   J3JVR3   Q7PSF4   A0A182X0N2   A0A182L6K3   D6WX65   A0A0L7R5F2   Q6WEW6   Q6WEW5   A0A1Y1NGG2   B4J3V9   A0A084VM49   E0VX46   A0A151J351   A0A151JW46   A0A151X095   A0A1B0GCL7   V5GGC2   A0A195C1D1   J3JTZ7   U4UKM8   A0A182K4R9   N6TYC2   A0A0T6BAF5   A0A1Y1NCR7  

Pubmed

19121390    22651552    28756777    16023793    26354079    22118469    + More
26369729    15696366    20353571    20798317    20075255    25315136    21347285    17994087    26108605    17550304    10731132    12537568    12537572    12537573    12537574    15161098    16110336    17569856    17569867    26109357    26109356    24495485    25348373    25830018    22936249    30249741    15632085    24845553    21282665    25244985    25474469    12364791    22516182    20966253    18362917    19820115    28004739    24438588    20566863    23537049   

EMBL

EU439269    ACA24126.1    BABH01012853    DQ443309    ABF51398.1    AK402403    + More
BAM19025.1    KZ150082    PZC73858.1    AY829802    AAV91416.1    KQ460597    KPJ13880.1    KQ459591    KPI97036.1    AK401725    BAM18347.1    AGBW02013638    OWR43052.1    GDAI01000653    JAI16950.1    KQ764881    OAD54348.1    BK001610    DAA01876.1    JXJN01002747    UFQS01000236    UFQT01000236    SSX01815.1    SSX22192.1    EZ423666    EZ423667    ADD19942.1    GL443213    EFN62436.1    KQ434792    KZC05477.1    CVRI01000038    CRK93836.1    NEVH01000618    PNF43210.1    KQ976470    KYM84040.1    KA644901    AFP59530.1    AJWK01027101    AJWK01027102    KY661303    AVA17390.1    KQ435710    KOX79857.1    ADTU01002375    ADTU01002376    ADTU01002377    ADTU01002378    ADTU01002379    CH964182    EDW80230.2    GBYB01012438    JAG82205.1    JRES01000536    KNC30347.1    GFDF01000266    JAV13818.1    CM000157    EDW88948.2    CH902620    EDV31774.2    CH933807    EDW12535.2    CH940649    EDW64615.2    CM000361    EDX03802.1    AE014134    AY113496    AY283601    KX531911    AAF52229.2    AAM29501.1    AAQ21104.1    AHN54134.1    ANY27721.1    GAMC01006354    JAC00202.1    GDHF01024571    JAI27743.1    GAKP01008375    JAC50577.1    GBXI01008948    JAD05344.1    GDHF01017997    JAI34317.1    GL448287    EFN84887.1    CH954177    EDV57841.2    CM002910    KMY88267.1    ABLF02041076    ABLF02041084    CP012523    ALC39323.1    QOIP01000009    RLU18918.1    GAMD01000703    JAB00888.1    OUUW01000004    SPP79526.1    CH379060    EAL33878.2    CH479180    EDW29164.1    BK001458    DAA01506.1    KK852544    KDR21640.1    AHN54135.1    CH480820    EDW54350.1    GL770386    EFZ10156.1    AXCN02000844    GFDL01004543    JAV30502.1    GANO01002341    JAB57530.1    AXCM01000140    GBBI01002211    JAC16501.1    APCN01004212    AAAB01008835    DS231887    EDS43498.1    BT127331    AEE62293.1    EAA05740.5    KQ971361    EFA08799.1    KQ414652    KOC66107.1    AY292255    AAQ57578.1    AY292256    AAQ57579.1    GEZM01006536    JAV95735.1    CH916367    EDW01542.1    ATLV01014577    KE524975    KFB39043.1    DS235829    EEB17952.1    KQ980313    KYN16722.1    KQ981664    KYN38491.1    KQ982617    KYQ53787.1    CCAG010021474    GALX01005447    JAB63019.1    KQ978350    KYM94684.1    BT126707    AEE61669.1    KB632243    ERL90555.1    APGK01057130    APGK01057131    KB741277    ENN71297.1    LJIG01002610    KRT84330.1    GEZM01006537    JAV95734.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000005203    UP000091820    + More
UP000092443    UP000092460    UP000078200    UP000092445    UP000000311    UP000076502    UP000183832    UP000002358    UP000235965    UP000078540    UP000095301    UP000092461    UP000053105    UP000005205    UP000007798    UP000095300    UP000037069    UP000002282    UP000007801    UP000009192    UP000008792    UP000000304    UP000000803    UP000192221    UP000008237    UP000008711    UP000007819    UP000092553    UP000279307    UP000268350    UP000001819    UP000008744    UP000027135    UP000001292    UP000075886    UP000075900    UP000075920    UP000079169    UP000076408    UP000075883    UP000075885    UP000075840    UP000002320    UP000007062    UP000076407    UP000075882    UP000007266    UP000053825    UP000001070    UP000030765    UP000009046    UP000078492    UP000078541    UP000075809    UP000092444    UP000078542    UP000030742    UP000075881    UP000019118   

PRIDE

Q1HPU3    I7JI13    Q9VMT2    X2JD70   

Pfam

PF13499   EF-hand_7        + More
PF14658   EF-hand_9
PF00372   Hemocyanin_M
PF13833   EF-hand_8
PF03723   Hemocyanin_C
PF03722   Hemocyanin_N
PF13202   EF-hand_5

Interpro

IPR018247   EF_Hand_1_Ca_BS        + More
IPR002048   EF_hand_dom       
IPR011992   EF-hand-dom_pair       
IPR039508   KASH5_EF-hand-like_dom       
IPR036697   Hemocyanin_N_sf       
IPR005203   Hemocyanin_C       
IPR000896   Hemocyanin/hexamerin_mid_dom       
IPR014756   Ig_E-set       
IPR005204   Hemocyanin_N       
IPR013788   Hemocyanin/hexamerin       
IPR037020   Hemocyanin_C_sf       
IPR008922   Unchr_di-copper_centre       

SUPFAM

SSF47473   SSF47473        + More
SSF81296   SSF81296       
SSF48056   SSF48056       
SSF48050   SSF48050       

Gene 3D

1.10.1280.10     1.20.1370.10     2.60.40.1520    

CDD

cd00051  EFh

ProteinModelPortal

B1ABS9   Q1HPU3   I4DM85   A0A2W1BGD3   Q5MGI4   A0A194R9E2   + More
A0A194PUF2   I4DKA7   A0A212ENI3   A0A0K8TSM8   A0A310SBV7   I7JI13   A0A088A1R8   A0A1A9WW92   A0A1A9Y3H2   A0A1B0ASE7   A0A336LVV7   A0A1A9VMI7   A0A1B0AEK8   D3TQG4   E2AW14   A0A154P0V4   A0A1J1I2M0   K7IPW2   A0A2J7RQU3   A0A151I3Y2   T1P891   A0A1B0CT53   A0A2P0XIY8   A0A0M9A9B6   A0A158NSR4   B4N789   A0A1I8Q9A8   A0A0C9QDD4   A0A0L0CDP9   A0A1L8E500   B4P083   B3MLM5   B4KJT2   B4LRE5   B4Q3J8   Q9VMT2   W8C2W5   A0A0K8UMP1   A0A034W8E9   A0A0A1X203   A0A1W4UWX9   A0A0K8V5W9   E2BHB8   B3N4T9   A0A0J9QW26   J9JKK3   A0A0M3QTQ5   A0A3L8DG92   T1EAW4   A0A3B0K1Q1   Q29M18   B4G6Q0   I7L9C9   A0A067RM50   X2JD70   B4I1E3   E9JAJ5   A0A182R0S1   A0A1Q3FSS2   A0A182RAU7   A0A182VUL7   A0A1S3CW92   A0A182YNF6   U5ESI2   A0A182MD79   A0A023F4V2   A0A182P9I4   A0A182HGB8   A0A1S4H1L0   B0WCH4   J3JVR3   Q7PSF4   A0A182X0N2   A0A182L6K3   D6WX65   A0A0L7R5F2   Q6WEW6   Q6WEW5   A0A1Y1NGG2   B4J3V9   A0A084VM49   E0VX46   A0A151J351   A0A151JW46   A0A151X095   A0A1B0GCL7   V5GGC2   A0A195C1D1   J3JTZ7   U4UKM8   A0A182K4R9   N6TYC2   A0A0T6BAF5   A0A1Y1NCR7  

PDB

2JNF     E-value=1.90707e-27,     Score=299

KEGG

732982    no KO assigned | (RefSeq) troponin C 25D

GO

GO:0005509   GO:0016021   GO:0005865   GO:0019722   GO:0006937   GO:0005861   GO:0051015   GO:0003009   GO:0048306   GO:0051056   GO:0015074   GO:0004190   GO:0006508   GO:0004553   GO:0005634   GO:0006334   GO:0003779  

PANTHER

PTHR11511  

Length:

151

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04979

Exp number, first 60 AAs:

0.04926

Total prob of N-in:

0.32336

outside

1  -  151

 

 

Pi

237.22712

Theta

202.312055

Tajima's D

0.115401

CLR

0.638176

CSRT

0.40157992100395

Interpretation

Uncertain