SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01257
Pre Gene Modal
BGIBMGA009029
Annotation
PREDICTED:_synaptotagmin-15-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 1.567 PlasmaMembrane   Reliability : 1.369
 

Sequence

CDS
ATGTTAAACCTGTCTCCTTCAAGTTATCGGAACGTTGATCTTAGCGATCGGACAGTGACGAGTAAGAAGGTGTACTCGCGGAGGCCGTGGTACGCTCCGCCGGTAGACCCTGCAGAAATATTAAGGGAACAGGAGAGATATTCAGATTACGATTCTGAATACGGAGGCAGCGAAGACGCAAATGCAAAACAGGTGGAAGATTATTACGACCGGCACCAAGACTACGACGAAGCAGTAGCTCCGCAACCCGTCGAAGCTTTGGGGCACCTAGAAAGCTCTTCCATCCAAGCGAGCTTCGAAAAAGCTCCTACCACAAGCTCCGTCTCTGAATTTTCGATAGCTAATGCTGTGAATTTACGAGAGGCAGTACTCGTGGCTTTGGGTGGTGCAAGTGCGGCTTTGGTCCTTTTGATTGTGATGGCTGGAGTATTCGTGGCTCGTCGACGCAAGAACAGCCCGTCCCCTACACCTTCACCCCCGATATTGGTGTATCCACCACACGACATCTCAGCCCCTTGCTATATGACGAAAGAAGTGAACTTCTCGCTGCCCACCCTTCGCTCTTCTTCGCTCGGTGAACTTCGTGACGTAGTGAGCGTCAACAGCTTGGGAAGCGACGTGCTCTGCCCGCCGGTACCTACGCAACTGCGCTCCAATTCTTTTACTAATACAGCGGACCTTGGAGTTCTGGACCCGGCACTGTACAAGTCAGATTGTCTGGACGAAGATTTTATGTGGCCTGAGGGGCATGTGGTGAGTTTCCATTAG
Protein
MLNLSPSSYRNVDLSDRTVTSKKVYSRRPWYAPPVDPAEILREQERYSDYDSEYGGSEDANAKQVEDYYDRHQDYDEAVAPQPVEALGHLESSSIQASFEKAPTTSSVSEFSIANAVNLREAVLVALGGASAALVLLIVMAGVFVARRRKNSPSPTPSPPILVYPPHDISAPCYMTKEVNFSLPTLRSSSLGELRDVVSVNSLGSDVLCPPVPTQLRSNSFTNTADLGVLDPALYKSDCLDEDFMWPEGHVVSFH

Summary

Pfam
PF00168   C2
Interpro
IPR000008   C2_dom        + More
IPR030539   SYT15       
IPR035892   C2_domain_sf       
Gene 3D

Ontologies

Topology

Length:
255
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.80776
Exp number, first 60 AAs:
0
Total prob of N-in:
0.31146
outside
1  -  122
TMhelix
123  -  145
inside
146  -  255
 
 

Population Genetic Test Statistics

Pi
183.901333
Theta
169.447422
Tajima's D
0.391045
CLR
0.098285
CSRT
0.485875706214689
Interpretation
Uncertain
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