Silkworm Genome Informatics Database

Gene

KWMTBOMO01255

Pre Gene Modal

BGIBMGA008858

Annotation

PREDICTED:_rap1_GTPase-activating_protein_1-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr3(+):6741092-6777047 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.632

CDS

ATGAAATCCCACGGTATGAGTTCAATGGACGCCAACCTCGTCACGGCTACTTACGTTACCCGGCCGGAGAACCGTCACTCGGTGCCCGTGGGAAGTGCCACTAGAGACAAACAGTATTCAGGACTTCCACCATCTCCAGCTGTTGCTTGTCAGGCCAGTCAGAGGCTCCTGGAAGAGATTCTTTCGAAGCCTGGAACCCCACCGACCATAGTTCTACCTCCAAGTGGAGGTTACTGGGTAGACGGAGTTGACGATAGTCCACATGATGGCGAGGAAGTCGCGCCAAGACCGCAGCCTGGGACCCCGCGGCAGTCCAATAGACGGCACAACATCGACACCGATGAAACCGCCACATACTACAGGAGATATTTCCTTGGCCAGGAGCATATTAATTTGGTAGGCAACGATCAAAATCTGGGACCTGTCGTCATGTCTCTGAAGAAAGAACACATAGCTGGCCAGGAACAGACTAGAATACTTCTGAGGCTTCGAACAGAGACCATGCGAGGAACCATACCCACTGGATCAGGGCCGCTTTCTTCCCCTCTAAGAATGGCGAAAATGCTTAACGAAAAAGTTAATGTGGACAATTTCATGGCTGTCACTTGTCTGAACGCTTCATCGTTGATAGCCGCTTTTGATGAGCGCGTGTTGAACGAAAGGTTCAAGTTTGGAGTTCTCTACCAGAAGTACGGACAGACTACAGAAGAACAGATTTTTGGGAACAACGACACGTCACCGGCCTTTGACGAGTTTTTGGAGATGCTGGGACAGAGGATCAAGCTGAAAGATCACAAAGGTTATCGAGGAGGTCTTGACGTGACGGGTCACACCGGCACTGAGGCAGTCTACGAGCAATACCACAACCGGGAGATAATGTTCCACGTGGCGCCACTGCTACCCCACACTGCCGGAGACGCGCAGCAGCTGCAGAGGAAACGACACGTGGGGAACGACATTGTAGCCGTCGTCTTTCAGGAGAAGGCGACTCCGTTCACACCGGACATGATCGCCTCGCACTTCCTACATGCGTTCATAGTTATCACGCCAGAGTTCGTGGATGGGGAGACCAGGTACAAAGTGGCCGTCACCGCACGTGTGGACGTACCATTCTTCGGGCCGACTCTCCCGCAGCCGTCTCTATACCGTAAAGGAAGAGAATTCAAAGACTTCCTCCTAACGAAACTGATAAACGCCGAGAACGCTTGCTTCAAAGCCGATAAGTTCGCCCAACTGGAACTCCGGACTAGGGCGTCGCTGCTGCAGCACTTGTGTGACGACTTGAAGAGTAAGACTAGCGAGTTCATGGGCGCGCCGGCGAAGATCGAACCGGGGGCCGTGTCGCCGAAACCGGACGGAACACCGAAACAAGAAGGGCCCGGCTCTAAATTCATCATAACCGTAAAGAACGTGCTAATATCGAAAGTAAAATCACCGAGTGTAGACACGAATCTCTCAGGCGATAACAACAAGAATTACGCGAACAAAAACAAATTCATGCCAAACGAGACTCACACTCCGAATAGCGGTCGTTCGAAGTCATCTATAGCGTCGTCGTCGGCGAGCGCAGTGTCGGTTCGTTCAGCCGGTGGGTCCGGGGAGTCCAGTCCGGATGTGACGTCACGAGCCGCCCCTCCGAGACCGCCGCTGAACGACCACAGCGACGACTCCAGCCTCAACTCAGTCGACTTGGATCCGCTTGGCGGCGTATACGTAGACAGCGACACCGGTCTGGAGTCGATGTCGTCTGCGGAGGCGGGTGCGGGGTGCGGGGCGGGCGCTGCGGGGGGACGCGCCGACGGAGCCGCACCGCCGCGGGGGGACGCCGACCTACGACAAGAGGTCTGCAGGCTCAAGAATGACAAACTGGATCTACTCAAGCAGAACATTACCTGGCAGAATGAAATCAAGAACTTACGCGAAAGAGAAATATCTCTGCAAGCCGAGTTGGCCGCCGCGGCGAGGGAAGTCCGAAGGCTCAGAGAGCAACAACAGTCACTAAGCACAACCATCCCGAACCCTTCGCCACACGATTCCACGGCCTAA

Protein

MKSHGMSSMDANLVTATYVTRPENRHSVPVGSATRDKQYSGLPPSPAVACQASQRLLEEILSKPGTPPTIVLPPSGGYWVDGVDDSPHDGEEVAPRPQPGTPRQSNRRHNIDTDETATYYRRYFLGQEHINLVGNDQNLGPVVMSLKKEHIAGQEQTRILLRLRTETMRGTIPTGSGPLSSPLRMAKMLNEKVNVDNFMAVTCLNASSLIAAFDERVLNERFKFGVLYQKYGQTTEEQIFGNNDTSPAFDEFLEMLGQRIKLKDHKGYRGGLDVTGHTGTEAVYEQYHNREIMFHVAPLLPHTAGDAQQLQRKRHVGNDIVAVVFQEKATPFTPDMIASHFLHAFIVITPEFVDGETRYKVAVTARVDVPFFGPTLPQPSLYRKGREFKDFLLTKLINAENACFKADKFAQLELRTRASLLQHLCDDLKSKTSEFMGAPAKIEPGAVSPKPDGTPKQEGPGSKFIITVKNVLISKVKSPSVDTNLSGDNNKNYANKNKFMPNETHTPNSGRSKSSIASSSASAVSVRSAGGSGESSPDVTSRAAPPRPPLNDHSDDSSLNSVDLDPLGGVYVDSDTGLESMSSAEAGAGCGAGAAGGRADGAAPPRGDADLRQEVCRLKNDKLDLLKQNITWQNEIKNLREREISLQAELAAAAREVRRLREQQQSLSTTIPNPSPHDSTA

Uniprot

A0A2W1BSX9 A0A2H1VFT0 H9JH61 A0A212EK74 S4NIL6 A0A194QIC3 + More
A0A139WDQ3 A0A139WDE1 A0A1L8DMF5 A0A2J7Q984 B4MZH7 T1GA28 B4KL25 B4LUQ9 A0A0Q9X5H3 B4JDA9 A0A0Q9WM64 A0A0Q9WB30

Pubmed

28756777 19121390 22118469 23622113 26354079 18362917 + More
19820115 17994087

EMBL

KZ149910 PZC78159.1 ODYU01002344 SOQ39720.1 BABH01012860 BABH01012861 + More
BABH01012862 AGBW02014320 OWR41865.1 GAIX01014019 JAA78541.1 KQ458756 KPJ05267.1 KQ971359 KYB25971.1 KYB25969.1 GFDF01006452 JAV07632.1 NEVH01016943 PNF25144.1 CH963920 EDW77762.2 CAQQ02196876 CAQQ02196877 CH933807 EDW12775.2 CH940649 EDW64236.1 KRG03423.1 CH916368 EDW03282.1 KRF81525.1 KRF81526.1

Proteomes

UP000005204 UP000007151 UP000053268 UP000007266 UP000235965 UP000007798 + More
UP000015102 UP000009192 UP000008792 UP000001070

PRIDE

H9JH61

Pfam

PF02145 Rap_GAP + More
PF02188 GoLoco

Interpro

IPR035974   Rap/Ran-GAP_sf        + More
IPR000331   Rap_GAP_dom
IPR003109   GoLoco_motif

SUPFAM

SSF111347 SSF111347

Gene 3D

3.40.50.11210

ProteinModelPortal

A0A2W1BSX9 A0A2H1VFT0 H9JH61 A0A212EK74 S4NIL6 A0A194QIC3 + More
A0A139WDQ3 A0A139WDE1 A0A1L8DMF5 A0A2J7Q984 B4MZH7 T1GA28 B4KL25 B4LUQ9 A0A0Q9X5H3 B4JDA9 A0A0Q9WM64 A0A0Q9WB30

PDB

1SRQ E-value=3.75628e-101, Score=943

KEGG

101742414 K17700 RAP1 GTPase activating protein 1 | (RefSeq) rap1 GTPase-activating protein 1-like

GO

GO:0005096 GO:0051056 GO:0015074 GO:0004190 GO:0006508 GO:0004553 GO:0005634 GO:0006334 GO:0003779 GO:0016021

Length:

681

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1023

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00527

outside

1 - 681

Pi

227.425796

Theta

162.915847

Tajima's D

1.227343

CLR

0.159613

CSRT

0.719314034298285

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics