Gene

KWMTBOMO01247

Pre Gene Modal

BGIBMGA008853

Annotation

PREDICTED:_long-chain-fatty-acid--CoA_ligase_5_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr3(+):6170495-6200799      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.024

CDS

ATGGGAAGCGGTAGATTTGGTTTTGCCGTTAACAAGAAAGACAAAGTGAATGTTACGAATGAAGTGAAGACTGAGTTTAGTGTTAAGGAAAAATGTCAGAAAATACAGAAGAAACTAAAGACTGAAAAGAAGAAGACTGAAGACGCGCAGGAGAAAACGATCTGGTGGAATCAATGTAGCAGTCTAAGCGAGATCGATCAGTATCTGTGGATGGTGGGGGGCTCAGCTGGTGCTCTGGCTTTGACCGGGGTCGCAGCCGCATCGGCCTTCTATCTAAGTACACGACCGAAACCAGAGAAACCACTCGTGACGCTACACGAACAGAGCCTCCTGGAGTCTGGACCTGAGATGGTTCGTGTTTCGAAATTCTACAAAGACGCGAAGAACGGACGTTTCCTACGATATCTTCACGAGGATACACGCACACTTTACGACACTTTCCGACGAGGCGTAAAAGAGTCGAACAATGGCAACTGTTTGGGTTGGCGCGAGGGTCCGAACAAGCCTTACGTTTGGCAGACATATAATGAGACTCTACTGCGCGCAAAGAATTTTGGTTCCGGTCTGCTCTGTCAAGGTCTCATTCCCGGTCAGACTACATTTGTCGGTATTTATTCGCAGAATTGTCCTGAATGGATTATGACCGAACAGGCGGCGTATTGTTATTCGATGGTTATAGTTCCGTTGTATGATACGCTAGGAGCGAACGCTTGTGCCTTCATTGTTAACCAAACTGAAATGGCTGTAGTAATTTGTGAAGACGACAAAAAAGCCAATCTCCTACTGGATCAGTCGCCTCGATGCCTCAGAAAACTGATTACAATTAAGGAAGTATCGCCGTCTACATTTCAACGCGCCAAGAGCCGTGGTGTTGAGATTTTGAAGTTCTCTGACGTCGAAATACAGGGAGCTCAAAAGGACCATCCTTTTGTCCCACCGAAACCGGAAAACCTTTGTACAATATGTTATACGTCCGGAACGACTGGGATGCCTAAAGGCGTTATGCTGACTCACGAGAACGTTGTAGCTTCGATGTGCAGCGTTACGATGCAACTCGGCGAGCATCGACCCACCAAGAACGACATCATGATCTCCTTCCTGCCTTTAGCTCACATGCTGGAGCGATGCTGCGAGAATGCTCTCTACATGGTGGGAGGAGCCGTTGGTTTCTACAGTGGCGATATAAGGAGGCTGGGCGATGACCTCACCGCTCTTAAGCCGACCATGATGCCGGCTGTTCCACGTCTCCTGAACAGACTGTACGACAAAGCCCAGACTGAGATCGCCAACTCGAAAATCAAGAAATTACTTTTCAACATGGCGCTATCCGCAAAAGAATCGGAATTGAAGAGAGGAATAGTTCGTGCTGACTCGATATGGGACAAGTTAGTTTTCCGCAAGGTTCGAGAAGGTATGGGAGGACGACTTCGGATAATGGTCGTCGGATCAGCGCCTTTAGCAGGAAACGTACTGACTTTCGCGAGATGCGCCCTCGGTTGTTTGATCGTGGAAGGCTACGGTCAGACAGAGTGCACTGCGCCGGTGACGCTAACAGTTCAGGGAGATCATGTTCCTGAACACGTCGGCCCTCCCGTCGCTTGTTGTAAAGTGAAGCTAGTGGACGTGCCCGAAATGGAGTACTATGCGGCGCAGGGCCAGGGTGAGGTTTGCGTGCAGGGAGCTAACGTCTTCAAAGGATACTTCAAGGACGCGGAGAAAACCAGAGAGGTCATCGACCAAGACGGATGGCATCACACCGGCGATGTCGGCAAGTGGTTACCTAACGGTACCCTGAAAATAATCGACAGAAGAAAACACATTTTCAAATTGTCACAAGGCGAATATATAGTTCCTGAGAAAATTGAAAACATTTACATTAGAAGTCAGTACGTTGAGCAAGTCTTTGTTCACGGTGAATCATTGAAGTCCTGCGTGGTCGCTATAGTTGTACCGGACGTGGATGTCGTTAAATGCTGGGCTTTAGAATACGGTATCAAAGGAACCTTCTCATCTCTGTGCGAGGATGAACGAGTCAAGAAGGTCATCATGGAGGACATGCTTCAGTGGGGCAGGAACGCTGGCCTGAAAACTTTTGAACAGGTAAAAGATATATACTTGCATCCGGATCCGTTTTCGGTACAGAACGGCCTACTGACGCCAACGATGAAGGCGAAGAGACCAGAAATACGAAGTTATTTCAAACCGCAAATAGAGGACATGTACAAGCAACTTGAATAA

Protein

MGSGRFGFAVNKKDKVNVTNEVKTEFSVKEKCQKIQKKLKTEKKKTEDAQEKTIWWNQCSSLSEIDQYLWMVGGSAGALALTGVAAASAFYLSTRPKPEKPLVTLHEQSLLESGPEMVRVSKFYKDAKNGRFLRYLHEDTRTLYDTFRRGVKESNNGNCLGWREGPNKPYVWQTYNETLLRAKNFGSGLLCQGLIPGQTTFVGIYSQNCPEWIMTEQAAYCYSMVIVPLYDTLGANACAFIVNQTEMAVVICEDDKKANLLLDQSPRCLRKLITIKEVSPSTFQRAKSRGVEILKFSDVEIQGAQKDHPFVPPKPENLCTICYTSGTTGMPKGVMLTHENVVASMCSVTMQLGEHRPTKNDIMISFLPLAHMLERCCENALYMVGGAVGFYSGDIRRLGDDLTALKPTMMPAVPRLLNRLYDKAQTEIANSKIKKLLFNMALSAKESELKRGIVRADSIWDKLVFRKVREGMGGRLRIMVVGSAPLAGNVLTFARCALGCLIVEGYGQTECTAPVTLTVQGDHVPEHVGPPVACCKVKLVDVPEMEYYAAQGQGEVCVQGANVFKGYFKDAEKTREVIDQDGWHHTGDVGKWLPNGTLKIIDRRKHIFKLSQGEYIVPEKIENIYIRSQYVEQVFVHGESLKSCVVAIVVPDVDVVKCWALEYGIKGTFSSLCEDERVKKVIMEDMLQWGRNAGLKTFEQVKDIYLHPDPFSVQNGLLTPTMKAKRPEIRSYFKPQIEDMYKQLE

Uniprot

H9JH56   A0A2W1BZK8   A0A194RDA4   A0A212F611   A0A194QK39   A0A2H1VSR4   + More
A0A2J7Q5J9   A0A1B6DXK4   D6WX25   A0A139WD75   A0A2J7Q5I9   A0A151J0T2   A0A1B6ECF8   A0A1B6CV09   A0A154PS73   A0A2J7Q5J3   A0A067RM11   E2B8X3   A0A0L7LHZ7   A0A195CRZ7   A0A1B6GVI6   A0A026WKS6   A0A0K8S802   A0A146MF58   A0A146KRJ5   A0A1B6GG16   A0A0A9Z670   T1H8U0   A0A0J7KUL2   A0A195FSW3   A0A158NZ27   E0VGP4   A0A224XKZ2   A0A088AEI4   A0A0C9R4H5   A0A151WIC4   A0A023F5A7   E2AHH7   A0A0A9Y3V0   A0A2A3E5P4   A0A1Y1M6L4   A0A146LAN7   A0A0C9R4J0   A0A0A9ZBK7   F4WFP0   A0A0M9A2Z7   A0A1L8DZ27   A0A1Y1M5I0   A0A1I8N9U0   U5EV39   T1PGF0   A0A084WGQ3   A0A2M4AFR6   A0A2M4CFT6   A0A2M4BG98   A0A1Q3G4V5   A0A2M3ZHV4   A0A1Q3G4R9   K7IPB5   B4LD54   A0A1S4H733   T1DKP6   A0A1I8Q768   A0A1S4FLQ3   B4KZ02   Q16WF9   A0A232FCY5   B4N4V1   A0A0M4EZJ9   A0A2M4CUE2   A0A182MXP5   B4IYE0   Q2M0E3   A0A1Q3FMQ2   B3M860   B4IFW8   A0A0K8VUM3   A0A1Q3FMK6   A0A0A1WWQ0   W5JFJ0   B0WXY8   B4IU74   B3NDU7   A0A1I8N9U3   B4QPX5   Q9VVT8   A0A3B0J429   W8CA63   A0A1W4UBZ5   A0A182MW28   Q95R88   A0A0N7Z8S9   A0A182FBH5   A0A1I8Q796   T1PEK6   A0A336MYI9   A0A336LMH8   A0A1S4H741   A0A182U085   A0A182VMK3  

Pubmed

19121390    28756777    26354079    22118469    18362917    19820115    + More
24845553    20798317    26227816    24508170    26823975    25401762    21347285    20566863    25474469    28004739    21719571    25315136    24438588    20075255    17994087    12364791    17510324    28648823    15632085    25830018    20920257    23761445    17550304    18057021    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    27129103   

EMBL

BABH01012944    BABH01012945    BABH01012946    KZ149910    PZC78156.1    KQ460597    + More
KPJ13891.1    AGBW02010099    OWR49168.1    KQ458756    KPJ05275.1    ODYU01004223    SOQ43873.1    NEVH01017557    PNF23850.1    GEDC01006890    JAS30408.1    KQ971361    EFA08781.2    KYB25909.1    PNF23849.1    KQ980591    KYN15210.1    GEDC01001728    JAS35570.1    GEDC01020051    JAS17247.1    KQ435124    KZC14766.1    PNF23854.1    KK852428    KDR24063.1    GL446390    EFN87872.1    JTDY01001002    KOB75148.1    KQ977329    KYN03513.1    GECZ01003307    JAS66462.1    KK107161    EZA56615.1    GBRD01016962    JAG48865.1    GDHC01000201    JAQ18428.1    GDHC01020354    JAP98274.1    GECZ01008377    JAS61392.1    GBHO01002867    GBRD01016961    JAG40737.1    JAG48866.1    ACPB03004429    KT328601    ALT07198.1    LBMM01003067    KMQ94003.1    KQ981276    KYN43538.1    ADTU01004531    ADTU01004532    ADTU01004533    DS235150    EEB12550.1    GFTR01007727    JAW08699.1    GBYB01011199    JAG80966.1    KQ983089    KYQ47540.1    GBBI01002424    JAC16288.1    GL439543    EFN67105.1    GBHO01017283    JAG26321.1    KZ288358    PBC27083.1    GEZM01042835    GEZM01042834    JAV79556.1    GDHC01013984    JAQ04645.1    GBYB01011214    GBYB01012111    JAG80981.1    JAG81878.1    GBHO01002866    JAG40738.1    GL888120    EGI67017.1    KQ435782    KOX74769.1    GFDF01002398    JAV11686.1    GEZM01042837    GEZM01042836    JAV79555.1    GANO01002050    JAB57821.1    KA646566    KA646953    AFP61582.1    ATLV01023664    KE525345    KFB49397.1    GGFK01006310    MBW39631.1    GGFL01000006    MBW64184.1    GGFJ01002840    MBW51981.1    GFDL01000246    JAV34799.1    GGFM01007279    MBW28030.1    GFDL01000247    JAV34798.1    CH940647    EDW69935.1    AAAB01008986    GAMD01000856    JAB00735.1    CH933809    EDW18894.1    CH477567    EAT38918.1    NNAY01000447    OXU28318.1    CH964101    EDW79390.1    CP012525    ALC43832.1    GGFL01004786    MBW68964.1    CH916366    EDV97613.1    CH379069    EAL30991.1    GFDL01006243    JAV28802.1    CH902618    EDV40999.1    CH480834    EDW46555.1    GDHF01009741    JAI42573.1    GFDL01006258    JAV28787.1    GBXI01013280    GBXI01011342    JAD01012.1    JAD02950.1    ADMH02001544    ETN62108.1    DS232176    EDS36798.1    CM000159    CH891806    EDW95404.1    EDW99937.1    KRK02422.1    CH954178    EDV52301.1    KQS44213.1    CM000363    CM002912    EDX11003.1    KMZ00459.1    AE014296    BT100231    AAF49219.1    ACY56899.1    OUUW01000002    SPP76197.1    GAMC01006051    JAC00505.1    AXCM01003643    AY061568    AAL29116.1    GDKW01002499    JAI54096.1    KA646565    AFP61194.1    UFQS01003221    UFQT01003221    SSX15385.1    SSX34755.1    UFQT01000061    SSX19186.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000235965    UP000007266    + More
UP000078492    UP000076502    UP000027135    UP000008237    UP000037510    UP000078542    UP000053097    UP000015103    UP000036403    UP000078541    UP000005205    UP000009046    UP000005203    UP000075809    UP000000311    UP000242457    UP000007755    UP000053105    UP000095301    UP000030765    UP000002358    UP000008792    UP000095300    UP000009192    UP000008820    UP000215335    UP000007798    UP000092553    UP000075884    UP000001070    UP000001819    UP000007801    UP000001292    UP000000673    UP000002320    UP000002282    UP000008711    UP000000304    UP000000803    UP000268350    UP000192221    UP000075883    UP000069272    UP000075902    UP000075903   

PRIDE

H9JH56    Q9VVT8    Q95R88   

Pfam

PF00501   AMP-binding        + More
PF01347   Vitellogenin_N
PF13193   AMP-binding_C

Interpro

IPR000873   AMP-dep_Synth/Lig        + More
IPR042099   AMP-dep_Synthh-like_sf       
IPR020845   AMP-binding_CS       
IPR001747   Lipid_transpt_N       
IPR015816   Vitellinogen_b-sht_N       
IPR011030   Lipovitellin_superhlx_dom       
IPR015819   Lipid_transp_b-sht_shell       
IPR025110   AMP-bd_C       

SUPFAM

SSF48431   SSF48431        + More
SSF56968   SSF56968       

Gene 3D

3.40.50.12780     1.25.10.20     2.30.230.10    

ProteinModelPortal

H9JH56   A0A2W1BZK8   A0A194RDA4   A0A212F611   A0A194QK39   A0A2H1VSR4   + More
A0A2J7Q5J9   A0A1B6DXK4   D6WX25   A0A139WD75   A0A2J7Q5I9   A0A151J0T2   A0A1B6ECF8   A0A1B6CV09   A0A154PS73   A0A2J7Q5J3   A0A067RM11   E2B8X3   A0A0L7LHZ7   A0A195CRZ7   A0A1B6GVI6   A0A026WKS6   A0A0K8S802   A0A146MF58   A0A146KRJ5   A0A1B6GG16   A0A0A9Z670   T1H8U0   A0A0J7KUL2   A0A195FSW3   A0A158NZ27   E0VGP4   A0A224XKZ2   A0A088AEI4   A0A0C9R4H5   A0A151WIC4   A0A023F5A7   E2AHH7   A0A0A9Y3V0   A0A2A3E5P4   A0A1Y1M6L4   A0A146LAN7   A0A0C9R4J0   A0A0A9ZBK7   F4WFP0   A0A0M9A2Z7   A0A1L8DZ27   A0A1Y1M5I0   A0A1I8N9U0   U5EV39   T1PGF0   A0A084WGQ3   A0A2M4AFR6   A0A2M4CFT6   A0A2M4BG98   A0A1Q3G4V5   A0A2M3ZHV4   A0A1Q3G4R9   K7IPB5   B4LD54   A0A1S4H733   T1DKP6   A0A1I8Q768   A0A1S4FLQ3   B4KZ02   Q16WF9   A0A232FCY5   B4N4V1   A0A0M4EZJ9   A0A2M4CUE2   A0A182MXP5   B4IYE0   Q2M0E3   A0A1Q3FMQ2   B3M860   B4IFW8   A0A0K8VUM3   A0A1Q3FMK6   A0A0A1WWQ0   W5JFJ0   B0WXY8   B4IU74   B3NDU7   A0A1I8N9U3   B4QPX5   Q9VVT8   A0A3B0J429   W8CA63   A0A1W4UBZ5   A0A182MW28   Q95R88   A0A0N7Z8S9   A0A182FBH5   A0A1I8Q796   T1PEK6   A0A336MYI9   A0A336LMH8   A0A1S4H741   A0A182U085   A0A182VMK3  

PDB

5MSQ     E-value=3.5622e-47,     Score=478

KEGG

101742560    K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] | (RefSeq) long-chain-fatty-acid--CoA ligase 5

PATHWAY

00061    Fatty acid biosynthesis - Bombyx mori (domestic silkworm)
00071    Fatty acid degradation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)
04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0003824   GO:0016021   GO:0016874   GO:0005319   GO:0102391   GO:0004467   GO:0003996   GO:0001676   GO:0006633   GO:0008152   GO:0008081   GO:0005515   GO:0006000   GO:0004553   GO:0005634   GO:0006334   GO:0003779  

Length:

745

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8.37092999999998

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.26293

outside

1  -  745

 

 

Pi

185.596584

Theta

162.290202

Tajima's D

0.379939

CLR

0.889588

CSRT

0.47737613119344

Interpretation

Uncertain