SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01235  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009033
Annotation
Hydroxybutyrate_dehydrogenase_[Operophtera_brumata]
Location in the cell
Cytoplasmic   Reliability : 1.842
 

Sequence

CDS
ATGAGTTTCAAAGAAAAAGTGGTTGTTGTGACAGGATCTAGTTCTGGGATAGGAGCATCGATTGCTATACAGTTCGCAGCTGAAGGAGCTAAAGTGGTTATTGTTGGTAGAAATGAAGTGAAACTTAAAACAGTTTTCGAGCAATGCGAGAAACATGGAAACCAGACCTTGAGTGTCACAGCTGATATGAACAAGGACGAGGACATCAAGAGAATTGTAGATGAAACCATTAAGCGTTTCGGAAAAATTGATGTCTTAGTGAACAATGCTGGTATTGGGGCATCTGCAAGCATCCTAGCTGAGAATGCTTTGGAAATATTCGATAAGGTTATATCTACGAACCTCCGATCCGCCGTGTGTATAACAAACTTAGCTGCGCCCCATCTTGTGAAAACTAAAGGTAATATCATTAACATTTCTAGTATAGCAAGCTTGGGTGTGCTATCACCAAATAATTTTATTTACGGAGCATCAAAAGCCGGCTTGGATCACTTTACTAGATGCATAGCACTGGAATTAGCAGGAAAAGGAGTACGAGTCAATTCCGTGAACCCTGGACCTGTTAAAACAGATATAATATCTAATATGGGAGTATCAGAATCGTACCAAGAAAAGATTTGGAATATCATGAAGAAAGGAACGGCTCTTGACAGAATTGCTGAACCCGAGGAAATTGCTGATATTGTTTTGTTTTTAGCAAGTGACAAAGCTAGAAGTATTACGGGATCGATATATGTTTCTGATAATGGAGCCCTTTTGAAAGGTTTGATGCCTGCAGAATAA
Protein
MSFKEKVVVVTGSSSGIGASIAIQFAAEGAKVVIVGRNEVKLKTVFEQCEKHGNQTLSVTADMNKDEDIKRIVDETIKRFGKIDVLVNNAGIGASASILAENALEIFDKVISTNLRSAVCITNLAAPHLVKTKGNIINISSIASLGVLSPNNFIYGASKAGLDHFTRCIALELAGKGVRVNSVNPGPVKTDIISNMGVSESYQEKIWNIMKKGTALDRIAEPEEIADIVLFLASDKARSITGSIYVSDNGALLKGLMPAE

Summary

Similarity
Belongs to the short-chain dehydrogenases/reductases (SDR) family.
EMBL
BABH01012981    NWSH01001398    PCG71373.1    ODYU01008068    SOQ51354.1    NWSH01006959    + More
PCG63175.1    JTDY01001151    KOB74729.1    PCG71375.1    PCG71374.1    KZ149910    PZC78151.1    JTDY01004206    KOB68460.1    ODYU01010604    SOQ55826.1    PCG71376.1    ODYU01011234    SOQ56848.1    ODYU01010994    SOQ56451.1    JTDY01000816    KOB75772.1    PZC78150.1    NWSH01001143    PCG72417.1    ODYU01009744    SOQ54378.1    PZC78149.1    AGBW02012537    OWR44869.1    EZ407245    ACX53802.1    KQ460317    KPJ16010.1    KQ461178    KPJ07785.1    ODYU01001522    SOQ37854.1    AK405443    BAM20756.1    KPJ07786.1    KPJ07784.1    KQ459602    KPI93179.1    ODYU01012735    SOQ59194.1    KPI93178.1    KPI93176.1    NWSH01001353    PCG71567.1    BABH01022835    KQ460655    KPJ12938.1    KPJ12937.1    JF433973    AEM17060.1    KQ459595    KPI95966.1    AGBW02014512    OWR41545.1    JTDY01000942    KOB75350.1    OWR41546.1    KPJ12939.1    KPI93177.1    KPI95965.1    KPI95964.1    AK404043    BAM20116.1    AF255341    AAF70499.1    SOQ37852.1    BABH01022634    AGBW02013539    OWR43254.1    ODYU01013212    SOQ59906.1    NWSH01004416    PCG65151.1    GEYN01000185    JAV44804.1    ODYU01006626    SOQ48636.1    SOQ37853.1    GEYN01000184    JAV44805.1    NWSH01003146    PCG66863.1    PCG71569.1    ODYU01000551    SOQ35503.1    BABH01022833    BABH01022834    JTDY01007623    KOB65070.1    JTDY01006084    KOB66312.1    BABH01022635    BABH01022636    KQ460254    KPJ16339.1    AGBW02010783    OWR47820.1    KQ459604    KPI92523.1    AK403809    BAM19952.1    KQ460650    KPJ13113.1    ODYU01010177    SOQ55120.1    JTDY01009080    KOB64125.1    KQ459579    KPI99448.1    GEYN01000194    JAV44795.1    KOB66313.1    NWSH01000090    PCG79695.1    PCG65148.1    OWR43255.1    ODYU01002398    SOQ39832.1    BABH01002061    PCG65149.1    PCG65150.1    KPJ16338.1    KQ459765    KPJ20037.1    AGBW02010784    OWR47781.1    JTDY01008777    KOB64405.1    KQ460571    KPJ13957.1    KQ459717    KPJ20326.1    ODYU01005275    SOQ45968.1    NWSH01000134    PCG79206.1    OWR47824.1    AK401105    KQ459528    BAM17727.1    KPJ00060.1    KQ459386    KPJ01162.1    AK401409    BAM18031.1    BABH01011332    GFDL01004892    JAV30153.1    KQ459580    KPI99297.1    ODYU01002131    SOQ39232.1    KQ459596    KPI95296.1    JTDY01010313    KOB58251.1   
Pfam
PF00106   adh_short        + More
PF00292   PAX
Interpro
IPR036291   NAD(P)-bd_dom_sf        + More
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       
IPR036388   WH-like_DNA-bd_sf       
IPR009057   Homeobox-like_sf       
IPR001523   Paired_dom       
SUPFAM
SSF51735   SSF51735        + More
SSF46689   SSF46689       
Gene 3D
PDB
1XKQ     E-value=1.34634e-33,     Score=355

Ontologies

Topology

Subcellular location
Nucleus  
Length:
260
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
8.38825
Exp number, first 60 AAs:
7.90339
Total prob of N-in:
0.41238
outside
1  -  260
 
 

Population Genetic Test Statistics

Pi
260.959707
Theta
235.644671
Tajima's D
0.374106
CLR
1.322065
CSRT
0.478126093695315
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 SMEVLFYR 100.00 6e-08
26822097 IVDETIKR 100.00 2e-04
28556443 VNSVNPGPVK 100.00 7e-04
28556443 IVDETIK 100.00 0.006
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