SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01227
Pre Gene Modal
BGIBMGA009036
Annotation
Spatzle_3_[Operophtera_brumata]
Full name
Protein spaetzle 3      
Alternative Name
Protein spatzle 3
Location in the cell
Extracellular   Reliability : 2.219 Nuclear   Reliability : 1.606
 

Sequence

CDS
ATGTACGGTTCGTTTTCGACGCCGCCCGGCAGCCGAGTGAAGAGAGCACCCGGAGTTCCGGATATGCATGACGCATCTGGGGATTCGTACTTCCGTCACGCCAGACAGGCCTCGAACACACAATTGCCTGACGCGCAGGCCGTCAACAGTACCGGAAGGGTGGATGCGTGCGAAAGCAAAACGGAAATCATGACACCATACTGGGCCCTCAACTCGGCAAGGAAACTCCGAGCTATTGTGAACACTATGCACTTTGAACAGGCCATACATCAGGAAACTTGCAGCAAAACCACGACCGGCCGTTGCAACAGAGACTGCGGTTGCGAGCAAAAATACAAATGGCACCGGCTGCTCGCCTACGATCCGTCAGACGACTGCGCCGGTATCTTCATGGACTGGTTCCTATTTCCGTCCTGCTGCGTTTGCAGGTGTAAGCCTTGA
Protein
MYGSFSTPPGSRVKRAPGVPDMHDASGDSYFRHARQASNTQLPDAQAVNSTGRVDACESKTEIMTPYWALNSARKLRAIVNTMHFEQAIHQETCSKTTTGRCNRDCGCEQKYKWHRLLAYDPSDDCAGIFMDWFLFPSCCVCRCKP

Summary

Description
Neurotrophin which may function as a ligand to the Toll-related receptor Tollo. Involved in a Tollo and JNK signaling pathway that positively regulates neuromuscular junction (NMJ) growth in presynaptic motorneurons. May function by activating Tollo to promote the phosphorylation of JNK.
Subunit
Homodimer; disulfide-linked.
Miscellaneous
'Spaetzle' means 'noodles' in German.
Keywords
Complete proteome   Disulfide bond   Glycoprotein   Reference proteome   Signal  
Feature
chain  Protein spaetzle 3
EMBL
ODYU01006706    SOQ48794.1    KZ150022    PZC74872.1    JTDY01000411    KOB77313.1    + More
AK401239    BAM17861.1    KQ458756    KPJ05286.1    KQ460317    KPJ16014.1    AGBW02008884    OWR52304.1    KQ434860    KZC08923.1    KQ414659    KOC65620.1    APGK01035728    KB740928    ENN77933.1    GAMC01005848    JAC00708.1    GEZM01068363    JAV66965.1    PYGN01000258    PSN49898.1    GAMC01005849    GAMC01005847    JAC00709.1    KZ288365    PBC26839.1    GAKP01008470    JAC50482.1    KQ971357    KYB26146.1    KB632428    ERL95398.1    GBXI01002866    JAD11426.1    KQ977935    KYM98567.1    GDKW01003826    JAI52769.1    EFA09303.2    ACPB03014818    NEVH01009767    PNF32836.1    GECU01027472    JAS80234.1    KK852699    KDR18165.1    GEBQ01002256    JAT37721.1    GAKP01008471    GAKP01008469    JAC50483.1    GDHF01031928    JAI20386.1    GDHF01026744    GDHF01023215    GDHF01018758    JAI25570.1    JAI29099.1    JAI33556.1    GEBQ01025912    JAT14065.1    KQ982730    KYQ51485.1    CH478538    EAT32814.2    GECZ01005037    JAS64732.1    JRES01000438    KNC31253.1    KK107373    QOIP01000004    EZA51646.1    RLU23289.1    GDHC01002454    JAQ16175.1    CH477519    EAT39601.1    GBRD01014895    JAG50931.1    JXUM01069026    JXUM01069027    JXUM01069028    JXUM01069029    KQ562531    KXJ75686.1    GL445407    EFN89623.1    GECZ01019421    GECZ01012448    JAS50348.1    JAS57321.1    GEDC01025215    JAS12083.1    CP012523    ALC39470.1    ADTU01021451    ADTU01021452    ADTU01021453    ADTU01021454    ADTU01021455    ADTU01021456    GAPW01002824    JAC10774.1    AJWK01028669    AJWK01028670    AJWK01028671    AJWK01028672    GFDF01001001    JAV13083.1    ABLF02021002    ABLF02021003    GGMR01009067    MBY21686.1    GL732535    EFX84314.1    CH480818    EDW52048.1    ALC38965.1    CM000361    CM002910    EDX04146.1    KMY88875.1    AF296285    AE014134    AY121674    AAL33883.1    AAM52001.1    CH940649    EDW64021.1    CH902624    EDV33071.2    GGMS01003435    MBY72638.1    CM000157    EDW87702.1    CH933807    EDW11246.1    CVRI01000037    CRK93249.1    LJIJ01000664    ODM95494.1    CH954177    EDV59270.1    JXJN01004955    GDIP01154752    JAJ68650.1    GFTR01004610    JAW11816.1   
Pfam
PF16077   Spaetzle
Interpro
IPR032104   Spaetzle        + More
IPR029034   Cystine-knot_cytokine       
SUPFAM
SSF57501   SSF57501       
Gene 3D

Ontologies

Topology

Length:
146
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00529
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03237
outside
1  -  146
 
 

Population Genetic Test Statistics

Pi
194.6169
Theta
163.766694
Tajima's D
0.255462
CLR
1.307502
CSRT
0.440977951102445
Interpretation
Uncertain
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