SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01203
Pre Gene Modal
BGIBMGA008802
Annotation
neuropeptide_receptor_A14_[Bombyx_mori]
Full name
Neuropeptide CCHamide-2 receptor      
Location in the cell
PlasmaMembrane   Reliability : 4.972
 

Sequence

CDS
ATGACTGCCGAAGCTAACTACACGATGTCTGCGGAAAACGACACTGACGAATATATGCCATACGATGAAAGGTTGGAGACATATTTGGTTCCAATATTGTTCGCCGTTATATTCGTTGTCGGGGTGCTTGGGAACGGAACATTGGTGATAGTCTACGCCAGACATAGAGGAATGAGAAACGCTCCTAACACGTATATATTTTCATTAGCGCTAGCGGATCTGCTAGTCATCTTGATATGCGTGCCGTTCGTCTCCATAATCTACACTTTAGAGTCCTGGCCATGGGGAGAGCTTATATGTAGGATCTCTGAATCAGCAAAAGATGTGAGCATTGGTGTATCCGTGTTCACGTTGACAGCCCTATCGGCCGAGAGATATTGTGCGATCGTAAATCCATTCAGGAAACTACAACTTCGCAAACTCCCACTTGTTTGTGCCACATTCATCTGGGGCGCGGCGTTTATCTTTGCCATCCCCGCCGCCATATTCTCCAGTACAGTGACAGTGGAGTTAAAAGACAACGTTACTATCGTATACTGCACGCCGTATCCGAAGGACTGGACTAACTACTCCAAAGGGATGACAATTGCCAAAGCCTTGATATACTACGGTTTGCCGTTGATCGTGATTACGGTTTTCTATTCTCTGATGGCTCGGAGACTACTTGCAAGTACCAGGGAGATGCCAGGAGCTCTTCAAGGCGGTCAAGGCGAGGCTCAGGCTAAAGCTAGAAAGTCGGTAGCTTGCATGGTCCTTATATTTGTTATTGTATTCTTCATCTGCTTTCTGCCTTATCACGCTTTTGAGCTGTGGTATCATTTGTCTCCGACTTCGCTACTCGACTATAACGATTGGACCCACGCGTTGCGCATTATTGGATTCTGTTTGAGTTTCCTGAACTCCTGCGTGAATCCGGTCGCTTTGTACTGCGTCAGCGGCGTCTTCAGGCAGCATTTCAATCGCTACCTGTGCTGTCGCCGAAGCGCCTTACATCCAACTTGCAGCTCGCGTCTATCTAGAACCGCCATATGCGAAACATCGTTCCGGAGCACTCACCGGCATCGGTGCAACAGGAACCCAACAACAGAGAGTGTGGTAATATCGAACTACGATTACGGAAGCACCAACAAGAAGAGCAATATCATAACGAGAAACAACGCCGACGGGGTCACCATACTTACGATTAGGGACTCAAATGTATTCATTTCTGGTGAAATAGACGACAAACGCATCAACAGATAA
Protein
MTAEANYTMSAENDTDEYMPYDERLETYLVPILFAVIFVVGVLGNGTLVIVYARHRGMRNAPNTYIFSLALADLLVILICVPFVSIIYTLESWPWGELICRISESAKDVSIGVSVFTLTALSAERYCAIVNPFRKLQLRKLPLVCATFIWGAAFIFAIPAAIFSSTVTVELKDNVTIVYCTPYPKDWTNYSKGMTIAKALIYYGLPLIVITVFYSLMARRLLASTREMPGALQGGQGEAQAKARKSVACMVLIFVIVFFICFLPYHAFELWYHLSPTSLLDYNDWTHALRIIGFCLSFLNSCVNPVALYCVSGVFRQHFNRYLCCRRSALHPTCSSRLSRTAICETSFRSTHRHRCNRNPTTESVVISNYDYGSTNKKSNIITRNNADGVTILTIRDSNVFISGEIDDKRINR

Summary

Description
Receptor for the neuropeptide CCHamide-2.
Similarity
Belongs to the G-protein coupled receptor 1 family.
Keywords
Alternative splicing   Cell membrane   Complete proteome   Disulfide bond   G-protein coupled receptor   Glycoprotein   Membrane   Receptor   Reference proteome   Transducer   Transmembrane   Transmembrane helix  
Feature
chain  Neuropeptide CCHamide-2 receptor
splice variant  In isoform B.
EMBL
AB330435    BAG68413.1    KT031012    ALM88310.1    KQ458860    KPJ04824.1    + More
KQ460366    KPJ15631.1    AGBW02009890    OWR49633.1    KQ971363    EFA09272.1    HQ703464    ADZ15314.1    AXCN02000284    APGK01056811    APGK01056812    APGK01056813    KB741277    ENN71140.1    KB631786    ERL86066.1    NEVH01016943    PNF25073.1    GDHF01016967    JAI35347.1    KT031013    ALM88311.1    GGMR01020385    MBY33004.1    AAAB01008888    EAA08917.3    NWSH01000696    PCG74737.1    GGMS01009597    MBY78800.1    GBXI01001253    JAD13039.1    GBXI01007348    JAD06944.1    GAKP01009168    JAC49784.1    ABLF02022539    ABLF02022541    ABLF02022542    ABLF02022543    ABLF02034748    ABLF02053397    KK854364    PTY15097.1    CH963849    EDW74588.1    AAZX01009174    AB817298    BAO01065.1    CH916367    EDW00583.1    AB330436    BAG68414.1    CP012524    ALC41060.1    KK852871    KDR14578.1    GBBI01002008    JAC16704.1    CH933808    EDW10782.2    CH940648    EDW60371.2    CH902619    EDV38167.2    KPU77300.1    KPU77301.1    QOIP01000003    RLU25020.1    KK107151    EZA57359.1    CM002911    KMY91692.1    CH480841    EDW49559.1    AY282787    AE013599    BT022484    AAQ19611.1    AAY54900.1    MG550204    AWT50638.1    CM000071    EAL26612.1    CM000362    EDX05851.1    CM000157    EDW89805.1    PNF25139.1    CH479216    EDW33571.1    GL443287    EFN62213.1    CH954177    EDV59843.1    NNAY01001485    OXU23809.1    MG550203    AWT50637.1    ACPB03005200    KQ414646    KOC66558.1    PYGN01000333    PSN48337.1    OUUW01000001    SPP72803.1    KQ435896    KOX69289.1    KQ434890    KZC10422.1    CCAG010003762    CVRI01000059    CRL03743.1    UFQS01000834    UFQT01000834    SSX07155.1    SSX27498.1    ADTU01004175    ADTU01004176    KZ288302    PBC28826.1    EDW61052.1    KYB25711.1    CCAG010020384    AXCM01013418    AXCM01013419    AXCM01013420    JXUM01109685    JXUM01109686    JXUM01109687    KQ565344    KXJ71074.1    AXCN02002114    CH477872    EAT35449.1    GL449657    EFN82325.1    AB817297    BAO01064.1    ACPB03005213    EDW09923.1    KRG04984.1    GECU01022948    JAS84758.1    JXJN01020601    CH963719    EDW72016.1    EDV37000.1   
Pfam
PF00001   7tm_1
Interpro
IPR017452   GPCR_Rhodpsn_7TM        + More
IPR000276   GPCR_Rhodpsn       
IPR001556   Bombsn_rcpt-like       
IPR000611   NPY_rcpt       
PDB
6B73     E-value=1.92466e-24,     Score=279

Ontologies

Topology

Subcellular location
Cell membrane  
Length:
413
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
155.08414
Exp number, first 60 AAs:
23.15581
Total prob of N-in:
0.05510
POSSIBLE N-term signal
sequence
outside
1  -  29
TMhelix
30  -  52
inside
53  -  64
TMhelix
65  -  87
outside
88  -  108
TMhelix
109  -  128
inside
129  -  140
TMhelix
141  -  163
outside
164  -  193
TMhelix
194  -  216
inside
217  -  245
TMhelix
246  -  268
outside
269  -  287
TMhelix
288  -  310
inside
311  -  413
 
 

Population Genetic Test Statistics

Pi
17.472477
Theta
20.851642
Tajima's D
-1.215839
CLR
210.297713
CSRT
0.0993950302484876
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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