Gene

KWMTBOMO01197

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr3(+):4226000-4227684      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.058 PlasmaMembrane   Reliability : 1.445

CDS

ATGATATTTCGAGATTGGGGCTTTGGGGACGGGGAGGCCGTCTGTGGGGGTGGGGTGGCCTTGGCGGTGTCGCTCGACATCGCCAATGCGTTTAACACCCTGCCCTGGTCCGTGATAGGGGGGGCGCTGGAAAGACATGGAGTGCCCCTCTACCTTCGCCGGCTGGTCGGCTCCTACTTGGAGGACAGATCGGTCACGTGTACCGGACACGGTGGGGTCGTACATCGGTTTCCGGTCGTGCGCGGTGTTCCACAGGGGTCGGTACTCGGCCCTCTTTTGTGGAATATCGGGTATGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGCCTAAGCGTAATATGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGAGGGAGCTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTAGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCATAGGCCTCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGGATCGGGGTCGGGGTGCAGTTAAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGCACCTGGTCCCTGGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTTCCCAACATCGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCTTTTGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGGGGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTAACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGTGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGGCGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGATTCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCTACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTTGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCAACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCTAGCCCTGGCCCTCTAA

Protein

MIFRDWGFGDGEAVCGGGVALAVSLDIANAFNTLPWSVIGGALERHGVPLYLRRLVGSYLEDRSVTCTGHGGVVHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLSVICYADDTLVVARGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQHLVPGLLGVAGALSRLLPNIGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLGAEALAADYQWRANLRARGVARPSPSVVRVRRAQSRRSVLESWSRRLADPSAGRRTVEAIRPILVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECYHCGCDLDTAEHTLVACPAWEGWRRVLVAKIGNDLSLPSVVASMLGNDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLALALAL

Uniprot

Q868Q4   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   A0A2W1B333   O01419   A0A0J7KM11   A0A0J7JWS3   A0A0J7KIY5   A0A0J7JZ13   A0A0J7KJH4   A0A0J7KLT9   A0A0J7JZF7   A0A0J7KJG6   A0A0J7N7S8   A0A0J7KQK3   A0A0J7KYD2   A0A0J7KL06   A0A0J7NMN5   A0A0J7KIW1   A0A0J7KIM6   A0A0J7K3R6   A0A0J7KPR0   A0A0J7KLH8   A0A0J7KPZ3   A0A0J7KRB8   A0A0J7K3F1   A0A0J7KWU5   A0A0J7K3R2   A0A0J7KF40   A0A0J7KF37   A0A0J7NAV8   A0A0J7KMU1   A0A0J7KW81   A0A0J7JXX4   A0A0J7N0R3   A0A0J7MY17   A0A0J7KMG5   A0A0J7KFH2   A0A2S2N8I2   A0A0J7NFZ0   A0A2S2PBP5   A0A0J7NDI6   A0A0J7KCZ9   X1WJY4   J9LJ80   A0A0J7KQY4   A0A0J7NJI3   A0A2H8TIE5   J9JWJ3   A0A2S2PEZ7   A0A2H8THF8   A0A2S2PEU2   J9LVU7   A0A3L8D2G3   J9KNG8   A0A3L8DDV9   A0A0J7KGJ6   J9KJG8   V5I8F3   A0A0J7MWN5   J9K6F0   A0A2M4BBV9   A0A0J7MYL9   A0A2M4BDI3   A0A2S2NJ82   A0A2M4BC28   A0A0J7KLK2   A0A2H8TIT6   X1WSG8   J9LFA1   X1WXT5   A0A2S2P7D1   A0A2M4BC01   A0A2H8TR36   A0A2S2NQQ6   A0A0J7KP92   A0A3Q0JIB3   A0A0A1WPA4   A0A0J7KSR8   F7IYU8   A0A139W939  

Pubmed

12644555    28756777    9092665    30249741    25830018    18362917    + More
19820115   

EMBL

AB090825    BAC57926.1    AB078935    BAC06462.1    AB078931    BAC06456.1    + More
AB078930    BAC06454.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01012027    KMQ86470.1    KZ150386    PZC71062.1    D85594    BAA19776.1    LBMM01005707    KMQ91279.1    LBMM01024063    KMQ82623.1    LBMM01006954    KMQ90166.1    LBMM01019839    KMQ83438.1    LBMM01006657    KMQ90417.1    LBMM01005733    KMQ91252.1    LBMM01019838    KMQ83439.1    LBMM01006671    KMQ90407.1    LBMM01008682    KMQ88705.1    LBMM01004272    KMQ92618.1    LBMM01002052    KMQ95336.1    LBMM01006063    KMQ90967.1    LBMM01003245    KMQ93755.1    LBMM01006725    KMQ90373.1    LBMM01007036    KMQ90099.1    LBMM01015018    KMQ84954.1    LBMM01004634    KMQ92224.1    LBMM01005948    KMQ91066.1    LBMM01004505    KMQ92346.1    LBMM01003988    KMQ92922.1    LBMM01015025    KMQ84953.1    LBMM01002480    KMQ94776.1    LBMM01014956    KMQ84982.1    LBMM01008422    KMQ88894.1    LBMM01008448    KMQ88867.1    LBMM01007425    KMQ89740.1    LBMM01005216    KMQ91703.1    KMQ94772.1    LBMM01021647    KMQ83033.1    LBMM01012412    KMQ86235.1    LBMM01014122    KMQ85315.1    LBMM01005465    KMQ91492.1    LBMM01008278    KMQ89009.1    GGMR01000779    MBY13398.1    LBMM01005474    KMQ91485.1    GGMR01014195    MBY26814.1    LBMM01006496    KMQ90570.1    LBMM01009527    LBMM01009515    KMQ88059.1    KMQ88067.1    ABLF02011238    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    LBMM01004262    KMQ92649.1    LBMM01004261    KMQ92650.1    GFXV01002090    MBW13895.1    ABLF02013358    ABLF02013361    ABLF02054869    GGMR01015159    MBY27778.1    GFXV01001748    MBW13553.1    GGMR01015354    MBY27973.1    ABLF02034925    QOIP01000031    RLU14697.1    ABLF02005203    ABLF02041316    QOIP01000010    RLU18098.1    LBMM01007659    KMQ89538.1    ABLF02041886    GALX01004785    JAB63681.1    LBMM01015285    KMQ84870.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    GGFJ01001369    MBW50510.1    LBMM01013668    KMQ85535.1    GGFJ01001727    MBW50868.1    GGMR01004600    MBY17219.1    GGFJ01001439    MBW50580.1    LBMM01005845    KMQ91162.1    GFXV01002242    MBW14047.1    ABLF02004597    ABLF02041324    ABLF02041323    ABLF02041325    ABLF02004854    ABLF02041317    GGMR01012748    MBY25367.1    GGFJ01001370    MBW50511.1    GFXV01003903    MBW15708.1    GGMR01006838    MBY19457.1    LBMM01004697    KMQ92167.1    GBXI01013438    JAD00854.1    LBMM01003575    KMQ93366.1    AB593321    BAK38639.1    KQ972691    KXZ75807.1   

Proteomes

UP000036403    UP000007819    UP000279307    UP000079169    UP000007266   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q868Q4   Q8MY27   Q8MY31   Q8MY33   Q8MY35   A0A2W1C3J5   + More
A0A0J7N1D9   A0A2W1B333   O01419   A0A0J7KM11   A0A0J7JWS3   A0A0J7KIY5   A0A0J7JZ13   A0A0J7KJH4   A0A0J7KLT9   A0A0J7JZF7   A0A0J7KJG6   A0A0J7N7S8   A0A0J7KQK3   A0A0J7KYD2   A0A0J7KL06   A0A0J7NMN5   A0A0J7KIW1   A0A0J7KIM6   A0A0J7K3R6   A0A0J7KPR0   A0A0J7KLH8   A0A0J7KPZ3   A0A0J7KRB8   A0A0J7K3F1   A0A0J7KWU5   A0A0J7K3R2   A0A0J7KF40   A0A0J7KF37   A0A0J7NAV8   A0A0J7KMU1   A0A0J7KW81   A0A0J7JXX4   A0A0J7N0R3   A0A0J7MY17   A0A0J7KMG5   A0A0J7KFH2   A0A2S2N8I2   A0A0J7NFZ0   A0A2S2PBP5   A0A0J7NDI6   A0A0J7KCZ9   X1WJY4   J9LJ80   A0A0J7KQY4   A0A0J7NJI3   A0A2H8TIE5   J9JWJ3   A0A2S2PEZ7   A0A2H8THF8   A0A2S2PEU2   J9LVU7   A0A3L8D2G3   J9KNG8   A0A3L8DDV9   A0A0J7KGJ6   J9KJG8   V5I8F3   A0A0J7MWN5   J9K6F0   A0A2M4BBV9   A0A0J7MYL9   A0A2M4BDI3   A0A2S2NJ82   A0A2M4BC28   A0A0J7KLK2   A0A2H8TIT6   X1WSG8   J9LFA1   X1WXT5   A0A2S2P7D1   A0A2M4BC01   A0A2H8TR36   A0A2S2NQQ6   A0A0J7KP92   A0A3Q0JIB3   A0A0A1WPA4   A0A0J7KSR8   F7IYU8   A0A139W939  

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

497

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.01777

Exp number, first 60 AAs:

0.27723

Total prob of N-in:

0.01795

outside

1  -  497

 

 

Pi

46.568084

Theta

41.218659

Tajima's D

0.639966

CLR

0.231873

CSRT

0.570071496425179

Interpretation

Uncertain