SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01195
Pre Gene Modal
BGIBMGA013783
Annotation
AF461149_1_transposase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.666 Nuclear   Reliability : 1.908
 

Sequence

CDS
ATGGAGTGGACGCTTAAAGAAGACCGTGTTGCAGTTATTGCGTTGCATCGTTGCGGTTACGCGCCAATTCAAATTTTTAACATACTGAAAAATTTGAATATAACCAAAAGATTCGTTTATCGTACCATCAAACGATACAATGAAGACTCTAGTGTAGATGACAGGTCAAGAAGTGGTCGCCCTCGGTCTGTTAGGACTCCAGCAGTGATAAAAGCTGTGAAGGCGCGAATTCAAAGAAATCCCAAACAAAAGAGCTACAACAAACAAAATGATAAGGTGTACGCACACAGTAGTGAAGAAGCGAGCAACCATATTCCGCGTGTCCAACGAGGTCATTTTCCATCCTCGCTCATGGTATGGTTGGGAGTTTCTTATTGGGGCTTAACAGAGGTACATTTTTGTGAGAAAGGTGTAAAAACGAATGCAGTTGTGTATCAAAATACAGTCCTGATGAACCTTGTGGAACCTGTTTCTCATACCATGTTCAATAACAGGCACTGGGTATTCCAACAAGATTCGGCGCCAGCTCATAGAGCGAAGAGCACACAAGACTGGCTGGCGGCACGTGAAATCGACTTCATCCGGCACGAAGACTGGCTCTCCTCCAGTCCAGATTTGAATCCGTTAGATTACAAGATATGGCAACACTTGGAGGAAAAGGCGTGCTCAAAGCCTCATCCCAATTTGGAGTCACTCAAGACATCCTTGATTAAGGCAGCCGCCGATATTGACATGGACCTCGTTCGTGCTGCGATAGACGACTGGCCGCGCAGATTGAAGGCCTGTATTCAAAATCACGGAGGTCATTTTGAATAA
Protein
MEWTLKEDRVAVIALHRCGYAPIQIFNILKNLNITKRFVYRTIKRYNEDSSVDDRSRSGRPRSVRTPAVIKAVKARIQRNPKQKSYNKQNDKVYAHSSEEASNHIPRVQRGHFPSSLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLMNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWLSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE

Summary

Pfam
PF13358   DDE_3        + More
PF00292   PAX
Interpro
IPR036388   WH-like_DNA-bd_sf        + More
IPR009057   Homeobox-like_sf       
IPR038717   Tc1-like_DDE_dom       
IPR001523   Paired_dom       
SUPFAM
SSF46689   SSF46689       
Gene 3D
PDB
5CR4     E-value=1.92067e-08,     Score=139

Ontologies

Topology

Length:
271
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.04969
Exp number, first 60 AAs:
0.91482
Total prob of N-in:
0.08214
outside
1  -  271
 
 

Population Genetic Test Statistics

Pi
21.72614
Theta
13.889246
Tajima's D
-0.686947
CLR
0.115831
CSRT
0.202389880505975
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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